Wall clock time and date at job start Tue Mar 31 2020 13:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48504 * 109.47138 * 240.00083 * 3 2 1 5 5 H 1.48499 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47336 * 119.99478 * 3 2 1 7 7 C 1.37880 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00188 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00113 * 0.02562 * 7 2 1 10 10 N 1.46891 * 109.47208 * 185.14320 * 9 7 2 11 11 C 1.46897 * 111.00134 * 197.43151 * 10 9 7 12 12 C 1.52998 * 109.47402 * 73.88630 * 11 10 9 13 13 C 1.53000 * 117.49758 * 242.08031 * 12 11 10 14 14 C 1.52996 * 117.49991 * 173.42431 * 12 11 10 15 15 C 1.46904 * 110.99782 * 73.47967 * 10 9 7 16 16 N 1.46502 * 109.46922 * 206.63809 * 15 10 9 17 17 C 1.33898 * 120.92881 * 73.22103 * 16 15 10 18 18 O 1.21831 * 127.08176 * 359.93737 * 17 16 15 19 19 S 1.72211 * 105.83395 * 179.97438 * 17 16 15 20 20 C 1.76554 * 94.66539 * 359.97438 * 19 17 16 21 21 C 1.33301 * 106.53927 * 359.76746 * 20 19 17 22 22 C 1.52353 * 121.75933 * 179.68779 * 21 20 19 23 23 C 1.52959 * 108.92541 * 342.34112 * 22 21 20 24 24 C 1.53175 * 109.57632 * 51.55865 * 23 22 21 25 25 C 1.50350 * 126.97508 * 180.02562 * 20 19 17 26 26 H 0.97003 * 119.99901 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46771 * 65.14434 * 9 7 2 28 28 H 1.08995 * 109.47103 * 305.14606 * 9 7 2 29 29 H 1.09002 * 109.47232 * 193.88980 * 11 10 9 30 30 H 1.09001 * 109.47014 * 313.88267 * 11 10 9 31 31 H 1.09001 * 115.54950 * 27.74350 * 12 11 10 32 32 H 1.09003 * 117.49785 * 359.97438 * 13 12 11 33 33 H 1.09001 * 117.49764 * 145.01826 * 13 12 11 34 34 H 1.09009 * 117.49430 * 214.97771 * 14 12 11 35 35 H 1.08995 * 117.50107 * 359.97438 * 14 12 11 36 36 H 1.09004 * 109.46922 * 326.63200 * 15 10 9 37 37 H 1.08993 * 109.47250 * 86.63612 * 15 10 9 38 38 H 1.09003 * 109.69983 * 222.41066 * 22 21 20 39 39 H 1.08992 * 109.47927 * 102.14190 * 22 21 20 40 40 H 1.08998 * 109.45451 * 291.52286 * 23 22 21 41 41 H 1.08996 * 109.45010 * 171.58798 * 23 22 21 42 42 H 1.09000 * 109.58996 * 170.39495 * 24 23 22 43 43 H 1.08999 * 109.58780 * 49.95865 * 24 23 22 44 44 H 1.08999 * 109.62112 * 284.31717 * 25 20 19 45 45 H 1.09003 * 109.62096 * 44.86434 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2007 -3.6129 0.1253 11 6 1.5802 -4.8817 -0.2784 12 6 1.4408 -4.9193 -1.8016 13 6 0.0270 -5.0103 -2.3795 14 6 0.9564 -6.2253 -2.4345 15 6 2.7344 -3.6991 1.4913 16 7 4.0590 -4.3242 1.4594 17 6 5.1237 -3.6576 0.9960 18 8 5.1463 -2.5187 0.5638 19 16 6.4543 -4.7418 1.1356 20 6 5.4966 -6.0569 1.8216 21 6 4.2445 -5.6082 1.9103 22 6 3.1183 -6.4767 2.4566 23 6 3.5618 -7.9403 2.4278 24 6 4.9238 -8.0774 3.1150 25 6 5.9905 -7.4160 2.2331 26 1 -0.4850 0.8401 -0.0004 27 1 0.6957 -2.5980 -0.9321 28 1 0.5568 -2.5179 0.8405 29 1 2.2049 -5.7124 0.0499 30 1 0.5943 -4.9657 0.1789 31 1 2.1741 -4.3332 -2.3554 32 1 -0.8037 -5.0438 -1.6745 33 1 -0.1695 -4.4844 -3.3138 34 1 1.3709 -6.4982 -3.4051 35 1 0.7375 -7.0578 -1.7660 36 1 2.8155 -2.6974 1.9135 37 1 2.0640 -4.2994 2.1061 38 1 2.2272 -6.3529 1.8411 39 1 2.8972 -6.1822 3.4825 40 1 3.6415 -8.2751 1.3936 41 1 2.8276 -8.5524 2.9516 42 1 5.1619 -9.1329 3.2471 43 1 4.8948 -7.5828 4.0858 44 1 6.1624 -8.0268 1.3468 45 1 6.9184 -7.3134 2.7958 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103459343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:12 Heat of formation + Delta-G solvation = 18.656877 kcal Electronic energy + Delta-G solvation = -26148.374045 eV Core-core repulsion = 22679.134257 eV Total energy + Delta-G solvation = -3469.239789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69286 -38.00067 -37.72422 -35.93370 -34.93122 -32.46161 -31.12979 -29.70656 -27.73053 -27.24798 -24.70464 -23.37576 -22.88525 -22.07468 -21.61721 -20.80315 -19.79301 -18.96596 -18.03544 -16.58042 -16.33775 -15.93088 -15.40007 -15.12507 -15.04392 -14.52986 -14.22070 -14.14924 -13.80308 -13.62809 -13.57396 -13.29492 -13.04788 -12.74633 -12.50740 -12.02956 -11.77551 -11.63704 -11.32179 -11.20868 -11.09657 -11.06632 -11.00841 -10.75204 -10.68284 -10.60600 -10.42334 -10.06202 -9.89747 -9.55319 -9.42414 -9.25188 -9.04788 -8.39664 -7.56826 -7.48353 -5.99264 -3.99289 1.35043 1.64127 2.06439 2.66204 3.17908 3.41002 3.42527 3.50475 4.10678 4.40006 4.48227 4.61774 4.62840 4.69329 4.85391 5.02917 5.11787 5.21151 5.24756 5.27395 5.35950 5.41982 5.44113 5.47857 5.55740 5.68414 5.74818 5.80309 5.81905 5.84620 5.89478 5.98257 6.04985 6.07037 6.11010 6.19999 6.37887 6.50619 6.66637 6.98872 7.18459 7.27507 7.82952 7.89099 7.96565 8.12006 8.48872 9.16309 9.66232 11.11043 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.004982 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.862619 B = 5618.811414 C = 7055.345079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.076 0.924 9 C 0.201 3.799 10 N -0.540 5.540 11 C 0.084 3.916 12 C -0.130 4.130 13 C -0.177 4.177 14 C -0.187 4.187 15 C 0.275 3.725 16 N -0.525 5.525 17 C 0.502 3.498 18 O -0.439 6.439 19 S -0.042 6.042 20 C -0.221 4.221 21 C 0.111 3.889 22 C -0.062 4.062 23 C -0.115 4.115 24 C -0.116 4.116 25 C -0.026 4.026 26 H 0.260 0.740 27 H 0.039 0.961 28 H -0.003 1.003 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 -19.781 5.628 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.094 0.906 9 C 0.077 3.923 10 N -0.266 5.266 11 C -0.044 4.044 12 C -0.148 4.148 13 C -0.214 4.214 14 C -0.225 4.225 15 C 0.060 3.940 16 N -0.247 5.247 17 C 0.182 3.818 18 O -0.315 6.315 19 S 0.202 5.798 20 C -0.341 4.341 21 C -0.001 4.001 22 C -0.101 4.101 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.065 4.065 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.014 0.986 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.470 -18.548 4.673 20.535 hybrid contribution -1.683 0.852 0.633 1.990 sum 5.787 -17.696 5.306 19.359 Atomic orbital electron populations 1.69954 1.06015 1.26804 1.51466 1.24948 0.94761 0.99240 0.95428 0.86569 0.79356 0.82635 0.78947 1.20151 1.21562 1.20274 1.21351 0.94483 0.89466 1.49482 0.90596 1.19743 0.89119 0.86620 0.96814 1.61712 1.39241 1.04125 1.21513 1.21703 0.96671 0.92594 0.93413 1.22217 0.97741 0.99296 0.95587 1.22983 0.94044 1.01313 1.03066 1.22937 1.05360 0.92018 1.02144 1.22214 0.80491 0.99321 0.91954 1.46477 1.11147 1.11972 1.55057 1.21072 0.87072 0.90800 0.82881 1.91024 1.79070 1.15307 1.46053 1.84776 1.15826 1.08784 1.70440 1.23321 0.94169 1.00985 1.15626 1.20054 0.96090 0.84962 0.98954 1.20812 0.94540 0.93286 1.01478 1.21517 0.97300 0.94524 1.01942 1.21649 0.94283 1.00655 0.98901 1.19873 0.98239 0.88988 0.99446 0.93017 0.94333 0.98564 0.92069 0.95206 0.87125 0.89144 0.89088 0.89288 0.89471 0.87108 0.92452 0.89699 0.89505 0.91091 0.90755 0.90915 0.91309 0.90519 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 22.83 29.54 -169.99 -5.02 17.81 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.51 -14.54 8.39 -34.44 -0.29 -14.83 16 8 H 0.08 2.29 6.94 -52.49 -0.36 1.92 16 9 C 0.20 5.08 4.52 -4.98 -0.02 5.06 16 10 N -0.54 -11.29 4.43 -239.99 -1.06 -12.35 16 11 C 0.08 1.44 4.80 -3.83 -0.02 1.42 16 12 C -0.13 -2.19 5.05 -90.62 -0.46 -2.65 16 13 C -0.18 -2.71 10.16 -26.70 -0.27 -2.98 16 14 C -0.19 -2.49 10.25 -26.70 -0.27 -2.77 16 15 C 0.27 5.16 4.85 -63.31 -0.31 4.85 16 16 N -0.52 -9.06 2.80 -119.54 -0.33 -9.40 16 17 C 0.50 9.92 8.23 53.66 0.44 10.36 16 18 O -0.44 -10.61 16.88 5.07 0.09 -10.53 16 19 S -0.04 -0.65 22.96 -107.50 -2.47 -3.12 16 20 C -0.22 -2.77 6.41 -36.20 -0.23 -3.01 16 21 C 0.11 1.49 6.10 -81.03 -0.49 1.00 16 22 C -0.06 -0.61 4.90 -27.08 -0.13 -0.74 16 23 C -0.11 -0.85 5.85 -26.66 -0.16 -1.00 16 24 C -0.12 -0.79 5.99 -26.44 -0.16 -0.95 16 25 C -0.03 -0.23 6.27 -27.85 -0.17 -0.40 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.04 1.04 7.23 -51.93 -0.38 0.66 16 28 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 29 H 0.06 0.94 5.63 -51.93 -0.29 0.64 16 30 H 0.03 0.50 7.76 -51.93 -0.40 0.10 16 31 H 0.11 2.14 8.14 -51.93 -0.42 1.71 16 32 H 0.09 1.36 8.03 -51.93 -0.42 0.94 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.11 2.42 7.14 -51.93 -0.37 2.05 16 37 H 0.06 0.91 6.16 -51.93 -0.32 0.59 16 38 H 0.08 0.88 5.48 -51.93 -0.28 0.59 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 368.66 15.07 5.56 5.56 Total: -1.00 -32.22 368.66 -12.18 -44.40 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.03 Total: -1.26 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.64 Total: -5.07 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.66 Total: -47.79 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -2.47 Total: -3.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.22 -12.18 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103459343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.058 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds