Wall clock time and date at job start Tue Mar 31 2020 13:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48504 * 109.47138 * 240.00083 * 3 2 1 5 5 H 1.48499 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47336 * 119.99478 * 3 2 1 7 7 C 1.37880 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00188 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00113 * 0.02562 * 7 2 1 10 10 N 1.46891 * 109.47208 * 185.14320 * 9 7 2 11 11 C 1.46897 * 111.00134 * 197.43151 * 10 9 7 12 12 C 1.52998 * 109.47402 * 73.88630 * 11 10 9 13 13 C 1.53000 * 117.49758 * 242.08031 * 12 11 10 14 14 C 1.52996 * 117.49991 * 173.42431 * 12 11 10 15 15 C 1.46904 * 110.99782 * 73.47967 * 10 9 7 16 16 N 1.46502 * 109.46922 * 206.63809 * 15 10 9 17 17 C 1.33898 * 120.92881 * 73.22103 * 16 15 10 18 18 O 1.21831 * 127.08176 * 359.93737 * 17 16 15 19 19 S 1.72211 * 105.83395 * 179.97438 * 17 16 15 20 20 C 1.76554 * 94.66539 * 359.97438 * 19 17 16 21 21 C 1.33301 * 106.53927 * 359.76746 * 20 19 17 22 22 C 1.52353 * 121.75933 * 179.68779 * 21 20 19 23 23 C 1.52959 * 108.92541 * 342.34112 * 22 21 20 24 24 C 1.53175 * 109.57632 * 51.55865 * 23 22 21 25 25 C 1.50350 * 126.97508 * 180.02562 * 20 19 17 26 26 H 0.97003 * 119.99901 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46771 * 65.14434 * 9 7 2 28 28 H 1.08995 * 109.47103 * 305.14606 * 9 7 2 29 29 H 1.09002 * 109.47232 * 193.88980 * 11 10 9 30 30 H 1.09001 * 109.47014 * 313.88267 * 11 10 9 31 31 H 1.09001 * 115.54950 * 27.74350 * 12 11 10 32 32 H 1.09003 * 117.49785 * 359.97438 * 13 12 11 33 33 H 1.09001 * 117.49764 * 145.01826 * 13 12 11 34 34 H 1.09009 * 117.49430 * 214.97771 * 14 12 11 35 35 H 1.08995 * 117.50107 * 359.97438 * 14 12 11 36 36 H 1.09004 * 109.46922 * 326.63200 * 15 10 9 37 37 H 1.08993 * 109.47250 * 86.63612 * 15 10 9 38 38 H 1.09003 * 109.69983 * 222.41066 * 22 21 20 39 39 H 1.08992 * 109.47927 * 102.14190 * 22 21 20 40 40 H 1.08998 * 109.45451 * 291.52286 * 23 22 21 41 41 H 1.08996 * 109.45010 * 171.58798 * 23 22 21 42 42 H 1.09000 * 109.58996 * 170.39495 * 24 23 22 43 43 H 1.08999 * 109.58780 * 49.95865 * 24 23 22 44 44 H 1.08999 * 109.62112 * 284.31717 * 25 20 19 45 45 H 1.09003 * 109.62096 * 44.86434 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2007 -3.6129 0.1253 11 6 1.5802 -4.8817 -0.2784 12 6 1.4408 -4.9193 -1.8016 13 6 0.0270 -5.0103 -2.3795 14 6 0.9564 -6.2253 -2.4345 15 6 2.7344 -3.6991 1.4913 16 7 4.0590 -4.3242 1.4594 17 6 5.1237 -3.6576 0.9960 18 8 5.1463 -2.5187 0.5638 19 16 6.4543 -4.7418 1.1356 20 6 5.4966 -6.0569 1.8216 21 6 4.2445 -5.6082 1.9103 22 6 3.1183 -6.4767 2.4566 23 6 3.5618 -7.9403 2.4278 24 6 4.9238 -8.0774 3.1150 25 6 5.9905 -7.4160 2.2331 26 1 -0.4850 0.8401 -0.0004 27 1 0.6957 -2.5980 -0.9321 28 1 0.5568 -2.5179 0.8405 29 1 2.2049 -5.7124 0.0499 30 1 0.5943 -4.9657 0.1789 31 1 2.1741 -4.3332 -2.3554 32 1 -0.8037 -5.0438 -1.6745 33 1 -0.1695 -4.4844 -3.3138 34 1 1.3709 -6.4982 -3.4051 35 1 0.7375 -7.0578 -1.7660 36 1 2.8155 -2.6974 1.9135 37 1 2.0640 -4.2994 2.1061 38 1 2.2272 -6.3529 1.8411 39 1 2.8972 -6.1822 3.4825 40 1 3.6415 -8.2751 1.3936 41 1 2.8276 -8.5524 2.9516 42 1 5.1619 -9.1329 3.2471 43 1 4.8948 -7.5828 4.0858 44 1 6.1624 -8.0268 1.3468 45 1 6.9184 -7.3134 2.7958 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103459343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:11 Heat of formation + Delta-G solvation = -0.669147 kcal Electronic energy + Delta-G solvation = -26149.212085 eV Core-core repulsion = 22679.134257 eV Total energy + Delta-G solvation = -3470.077828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.98493 -39.18243 -39.13763 -37.23443 -36.30905 -34.58533 -31.98809 -30.74347 -29.64440 -28.55455 -26.34496 -24.60618 -24.09882 -23.20294 -22.92679 -22.09212 -21.22840 -20.11856 -19.09261 -18.57933 -17.84218 -17.48362 -16.81890 -16.49766 -16.37511 -15.91230 -15.64579 -15.38397 -15.03448 -14.72313 -14.60723 -14.54738 -14.25759 -13.90109 -13.76015 -13.60690 -13.45577 -13.06389 -12.74012 -12.68808 -12.61124 -12.40060 -12.34848 -12.11611 -11.87490 -11.68688 -11.63430 -11.46768 -11.25447 -11.16074 -10.97059 -10.76600 -10.61983 -10.36695 -9.20410 -8.77705 -8.23505 -6.29740 -0.02496 0.47659 0.88771 1.25788 1.31729 1.33987 1.43818 1.88539 2.36253 2.87023 3.08372 3.14121 3.51420 3.71004 3.89361 3.94504 4.02124 4.04825 4.12968 4.19362 4.28420 4.39549 4.42200 4.49986 4.53163 4.61823 4.71041 4.76551 4.80881 4.90393 5.00459 5.05555 5.09709 5.14119 5.16708 5.24430 5.25624 5.28974 5.34797 5.46878 5.55032 5.70029 5.84196 6.05890 6.15161 6.48286 6.54100 6.90226 7.39090 8.85930 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.004982 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.862619 B = 5618.811414 C = 7055.345079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.225 3.775 10 N -0.557 5.557 11 C 0.092 3.908 12 C -0.162 4.162 13 C -0.186 4.186 14 C -0.145 4.145 15 C 0.283 3.717 16 N -0.524 5.524 17 C 0.473 3.527 18 O -0.509 6.509 19 S -0.021 6.021 20 C -0.200 4.200 21 C 0.089 3.911 22 C -0.060 4.060 23 C -0.111 4.111 24 C -0.110 4.110 25 C -0.028 4.028 26 H 0.264 0.736 27 H 0.017 0.983 28 H -0.021 1.021 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -23.699 6.739 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.205 1.205 5 H -0.197 1.197 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.071 0.929 9 C 0.099 3.901 10 N -0.282 5.282 11 C -0.035 4.035 12 C -0.181 4.181 13 C -0.223 4.223 14 C -0.183 4.183 15 C 0.068 3.932 16 N -0.245 5.245 17 C 0.155 3.845 18 O -0.390 6.390 19 S 0.224 5.776 20 C -0.320 4.320 21 C -0.020 4.020 22 C -0.100 4.100 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.068 4.068 26 H 0.073 0.927 27 H 0.035 0.965 28 H -0.004 1.004 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.749 -22.544 5.809 24.536 hybrid contribution -1.665 1.933 0.313 2.571 sum 6.084 -20.611 6.122 22.345 Atomic orbital electron populations 1.70025 1.06919 1.27681 1.52067 1.25618 0.95590 1.02087 0.95159 0.85721 0.78403 0.79632 0.78500 1.20539 1.19740 1.20352 1.21532 0.93617 0.91524 1.49387 0.92881 1.19236 0.88910 0.87209 0.94750 1.61514 1.38711 1.04837 1.23178 1.21733 0.97081 0.91073 0.93653 1.22115 0.98132 1.02607 0.95274 1.23027 0.93377 1.03120 1.02786 1.23036 1.01691 0.90902 1.02626 1.21949 0.81857 0.98227 0.91165 1.46452 1.09888 1.13363 1.54783 1.21723 0.88834 0.90907 0.83027 1.90972 1.81083 1.17989 1.48993 1.84641 1.13893 1.08919 1.70121 1.24050 0.93028 1.01443 1.13492 1.20731 0.98011 0.83608 0.99680 1.21014 0.92896 0.94339 1.01722 1.21556 0.98264 0.92519 1.02490 1.21677 0.93005 1.02061 0.98188 1.20158 0.99470 0.86461 1.00695 0.92671 0.96468 1.00361 0.89766 0.94527 0.90644 0.88899 0.89609 0.87816 0.86750 0.91312 0.89059 0.90066 0.88216 0.91102 0.88219 0.88115 0.91132 0.89063 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 2 C 0.01 0.83 5.46 84.66 0.46 1.30 16 3 Si 0.95 48.53 29.54 68.60 2.03 50.55 16 4 H -0.28 -14.34 7.11 99.48 0.71 -13.64 16 5 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 7 C -0.52 -31.59 8.39 25.60 0.21 -31.38 16 8 H 0.05 3.44 6.94 -2.91 -0.02 3.41 16 9 C 0.22 12.00 4.52 85.56 0.39 12.39 16 10 N -0.56 -24.34 4.43 -913.19 -4.05 -28.38 16 11 C 0.09 3.12 4.80 86.30 0.41 3.53 16 12 C -0.16 -5.51 5.05 -10.80 -0.05 -5.56 16 13 C -0.19 -5.60 10.16 30.62 0.31 -5.29 16 14 C -0.15 -3.50 10.25 30.61 0.31 -3.19 16 15 C 0.28 11.06 4.85 170.80 0.83 11.89 16 16 N -0.52 -18.44 2.80 -650.77 -1.82 -20.26 16 17 C 0.47 19.64 8.23 129.93 1.07 20.71 16 18 O -0.51 -26.65 16.88 -4.77 -0.08 -26.73 16 19 S -0.02 -0.63 22.96 -56.49 -1.30 -1.93 16 20 C -0.20 -4.56 6.41 24.46 0.16 -4.40 16 21 C 0.09 2.23 6.10 41.11 0.25 2.48 16 22 C -0.06 -0.98 4.90 30.37 0.15 -0.83 16 23 C -0.11 -1.08 5.85 30.64 0.18 -0.90 16 24 C -0.11 -0.94 5.99 30.78 0.18 -0.75 16 25 C -0.03 -0.37 6.27 29.87 0.19 -0.19 16 26 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.02 0.98 7.23 -2.39 -0.02 0.97 16 28 H -0.02 -1.19 8.03 -2.39 -0.02 -1.21 16 29 H 0.08 2.43 5.63 -2.39 -0.01 2.41 16 30 H 0.04 1.20 7.76 -2.39 -0.02 1.18 16 31 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.09 2.73 8.03 -2.39 -0.02 2.71 16 33 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.10 2.22 8.14 -2.38 -0.02 2.21 16 35 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.07 3.25 7.14 -2.39 -0.02 3.24 16 37 H 0.09 2.88 6.16 -2.39 -0.01 2.86 16 38 H 0.08 1.41 5.48 -2.39 -0.01 1.40 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 0.74 8.11 -2.39 -0.02 0.72 16 41 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16 44 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -76.51 368.66 1.10 -75.41 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 0.98 Total: 7.74 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 5.05 Total: -0.19 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -5.58 Total: -104.85 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.08 Total: -26.73 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.55 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -1.30 Total: -1.93 kcal Total: -76.51 1.10 -75.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103459343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.742 kcal (2) G-P(sol) polarization free energy of solvation -76.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds