Wall clock time and date at job start Tue Mar 31 2020 13:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86803 * 120.00248 * 2 1 4 4 H 1.48493 * 109.47502 * 270.00420 * 3 2 1 5 5 H 1.48506 * 109.46688 * 30.00412 * 3 2 1 6 6 H 1.48503 * 109.47348 * 149.99832 * 3 2 1 7 7 C 1.37883 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99186 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00292 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.46932 * 184.24103 * 9 7 2 11 11 C 1.46903 * 111.00169 * 300.03835 * 10 9 7 12 12 C 1.50700 * 109.47192 * 287.69861 * 11 10 9 13 13 C 1.34520 * 125.78661 * 93.00720 * 12 11 10 14 14 C 1.41387 * 106.83588 * 180.02562 * 13 12 11 15 15 C 1.34510 * 106.84240 * 0.02562 * 14 13 12 16 16 O 1.34302 * 125.79142 * 272.70148 * 12 11 10 17 17 C 1.46896 * 111.00122 * 63.99150 * 10 9 7 18 18 C 1.50706 * 109.46859 * 66.04832 * 17 10 9 19 19 C 1.39331 * 120.03006 * 270.20401 * 18 17 10 20 20 N 1.31086 * 121.74701 * 180.24448 * 19 18 17 21 21 C 1.33677 * 121.32318 * 359.79242 * 20 19 18 22 22 C 1.40602 * 121.08073 * 179.97438 * 21 20 19 23 23 C 1.36074 * 119.74778 * 180.02562 * 22 21 20 24 24 C 1.39355 * 121.06934 * 359.95580 * 23 22 21 25 25 C 1.36145 * 120.86793 * 0.02562 * 24 23 22 26 26 C 1.40425 * 119.61188 * 0.02562 * 25 24 23 27 27 C 1.36576 * 120.03607 * 89.99926 * 18 17 10 28 28 H 0.97004 * 120.00226 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46750 * 64.24585 * 9 7 2 30 30 H 1.08997 * 109.47539 * 304.24286 * 9 7 2 31 31 H 1.08997 * 109.47277 * 47.69450 * 11 10 9 32 32 H 1.09000 * 109.47123 * 167.69946 * 11 10 9 33 33 H 1.07998 * 126.58471 * 0.03485 * 13 12 11 34 34 H 1.08003 * 126.57693 * 179.97438 * 14 13 12 35 35 H 1.07999 * 125.78840 * 180.02562 * 15 14 13 36 36 H 1.08998 * 109.47309 * 306.05156 * 17 10 9 37 37 H 1.09003 * 109.47418 * 186.04159 * 17 10 9 38 38 H 1.08001 * 119.13103 * 0.02562 * 19 18 17 39 39 H 1.08001 * 120.12601 * 0.02562 * 22 21 20 40 40 H 1.07998 * 119.46787 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.56892 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.19612 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.92050 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0011 -2.5752 -0.1040 11 6 3.5298 -3.3865 1.0263 12 6 4.2662 -2.9812 2.2771 13 6 3.8523 -2.0662 3.1721 14 6 4.8420 -2.0022 4.1798 15 6 5.8017 -2.8813 3.8400 16 8 5.4443 -3.4764 2.6903 17 6 3.6091 -3.1786 -1.3847 18 6 4.3102 -2.4648 -2.5117 19 6 3.7151 -1.3578 -3.1132 20 7 4.2925 -0.7148 -4.0988 21 6 5.4852 -1.0918 -4.5702 22 6 6.0996 -0.3986 -5.6281 23 6 7.3141 -0.8062 -6.0871 24 6 7.9643 -1.9030 -5.5249 25 6 7.4010 -2.5987 -4.4991 26 6 6.1479 -2.2070 -4.0007 27 6 5.5313 -2.8999 -2.9419 28 1 -0.4851 0.8401 0.0004 29 1 3.8751 -0.7477 0.9244 30 1 3.8745 -0.6156 -0.8506 31 1 2.4606 -3.2277 1.1667 32 1 3.7166 -4.4403 0.8200 33 1 2.9392 -1.4911 3.1293 34 1 4.8301 -1.3683 5.0542 35 1 6.7036 -3.0796 4.4001 36 1 2.5305 -3.0894 -1.5133 37 1 3.8901 -4.2318 -1.3912 38 1 2.7509 -1.0227 -2.7603 39 1 5.6096 0.4539 -6.0746 40 1 7.7817 -0.2707 -6.9001 41 1 8.9279 -2.2052 -5.9079 42 1 7.9143 -3.4473 -4.0718 43 1 6.0084 -3.7544 -2.4852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106116343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:48 Heat of formation + Delta-G solvation = 80.914680 kcal Electronic energy + Delta-G solvation = -26502.067651 eV Core-core repulsion = 22900.083611 eV Total energy + Delta-G solvation = -3601.984039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.04403 -40.61126 -37.79373 -36.37023 -33.46022 -32.53923 -32.43568 -31.20054 -29.95386 -29.57721 -27.83428 -25.89541 -24.10226 -23.91727 -22.46311 -21.86821 -21.22956 -20.45406 -19.54522 -17.80497 -17.39336 -16.93140 -16.62930 -16.08869 -15.78202 -14.88863 -14.66605 -14.55965 -14.26867 -14.11035 -13.84701 -13.73734 -13.49563 -12.89808 -12.68345 -12.50538 -12.34264 -12.32592 -12.12428 -11.67626 -11.55381 -11.45174 -11.27789 -11.10232 -10.92037 -10.83162 -10.40895 -10.22003 -9.99350 -9.65335 -9.41581 -9.12686 -8.67880 -8.45884 -8.11269 -7.98080 -7.40025 -6.20624 -4.21826 0.61274 1.04308 2.16647 2.25077 3.05860 3.16357 3.25810 3.33902 3.39351 3.48664 4.32383 4.34062 4.56518 4.75461 4.89370 4.93099 5.03763 5.14000 5.16631 5.21763 5.30468 5.35519 5.46209 5.49697 5.58167 5.69161 5.77093 5.87459 5.96674 6.10391 6.22843 6.25563 6.28882 6.36152 6.41452 6.47799 6.51567 6.58318 6.68243 6.77094 6.79231 7.01437 7.04522 7.10217 7.40019 7.65219 7.82387 7.84780 8.26577 8.30898 8.78689 9.42564 10.91064 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.004641 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.363602 B = 6031.953010 C = 7711.547456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.083 3.917 3 Si 0.863 3.137 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.147 3.853 10 N -0.527 5.527 11 C 0.132 3.868 12 C 0.018 3.982 13 C -0.201 4.201 14 C -0.214 4.214 15 C -0.061 4.061 16 O -0.177 6.177 17 C 0.098 3.902 18 C -0.108 4.108 19 C 0.159 3.841 20 N -0.484 5.484 21 C 0.121 3.879 22 C -0.093 4.093 23 C -0.111 4.111 24 C -0.129 4.129 25 C -0.093 4.093 26 C -0.105 4.105 27 C -0.052 4.052 28 H 0.265 0.735 29 H 0.034 0.966 30 H 0.028 0.972 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.194 0.806 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.172 0.828 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.122 -6.728 -3.813 15.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.121 4.121 3 Si 0.690 3.310 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.594 4.594 8 H 0.096 0.904 9 C 0.021 3.979 10 N -0.251 5.251 11 C 0.005 3.995 12 C -0.033 4.033 13 C -0.221 4.221 14 C -0.234 4.234 15 C -0.129 4.129 16 O -0.073 6.073 17 C -0.030 4.030 18 C -0.111 4.111 19 C -0.013 4.013 20 N -0.192 5.192 21 C 0.000 4.000 22 C -0.111 4.111 23 C -0.131 4.131 24 C -0.147 4.147 25 C -0.112 4.112 26 C -0.107 4.107 27 C -0.079 4.079 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.169 0.831 34 H 0.158 0.842 35 H 0.210 0.790 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.189 0.811 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.294 -6.069 -4.419 15.267 hybrid contribution -0.109 0.648 0.713 0.970 sum 13.185 -5.421 -3.706 14.729 Atomic orbital electron populations 1.69895 1.06253 1.27198 1.49505 1.24838 0.94520 0.98859 0.93878 0.87017 0.80650 0.84114 0.79226 1.19611 1.21176 1.18860 1.21544 0.90205 0.94613 1.53049 0.90387 1.20321 0.94742 0.85354 0.97510 1.62455 1.58949 1.04163 0.99488 1.20470 0.97099 0.96468 0.85507 1.22437 0.85218 0.97918 0.97693 1.21739 1.02615 1.02121 0.95664 1.21806 0.96212 1.03244 1.02092 1.23805 1.01439 0.98904 0.88785 1.83984 1.34168 1.54630 1.34525 1.20906 0.99019 0.95981 0.87131 1.20604 0.95542 0.97229 0.97700 1.23363 0.99596 0.89605 0.88736 1.68175 1.09016 1.29603 1.12373 1.18978 0.91620 0.93377 0.96029 1.20796 0.95163 0.99668 0.95506 1.20803 0.95107 0.97125 1.00085 1.20812 1.00185 0.96362 0.97300 1.20957 0.94067 0.99610 0.96540 1.18854 0.96356 0.97465 0.98071 1.21302 0.93843 0.98827 0.93888 0.92495 0.94764 0.95440 0.89136 0.90939 0.83096 0.84175 0.78951 0.91305 0.91139 0.81107 0.85119 0.85826 0.86041 0.85628 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 13.96 55.43 0.77 -24.62 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.86 20.96 27.39 -169.99 -4.66 16.30 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.37 6.67 56.52 0.38 -6.00 16 7 C -0.56 -13.82 7.74 -34.44 -0.27 -14.09 16 8 H 0.08 2.06 6.19 -52.49 -0.33 1.73 16 9 C 0.15 3.30 3.67 -4.98 -0.02 3.29 16 10 N -0.53 -10.05 4.65 -238.97 -1.11 -11.16 16 11 C 0.13 2.35 5.34 -4.97 -0.03 2.32 16 12 C 0.02 0.33 6.32 -35.62 -0.23 0.10 16 13 C -0.20 -3.72 9.79 -39.70 -0.39 -4.10 16 14 C -0.21 -3.36 10.91 -39.70 -0.43 -3.79 16 15 C -0.06 -0.89 12.09 29.41 0.36 -0.53 16 16 O -0.18 -3.04 10.65 5.71 0.06 -2.98 16 17 C 0.10 1.65 4.94 -4.98 -0.02 1.63 16 18 C -0.11 -1.86 4.87 -104.81 -0.51 -2.37 16 19 C 0.16 3.06 9.02 -17.46 -0.16 2.90 16 20 N -0.48 -9.33 10.34 -10.97 -0.11 -9.45 16 21 C 0.12 2.07 6.60 -84.86 -0.56 1.51 16 22 C -0.09 -1.32 9.98 -39.47 -0.39 -1.71 16 23 C -0.11 -1.28 9.94 -39.94 -0.40 -1.67 16 24 C -0.13 -1.41 9.96 -39.92 -0.40 -1.81 16 25 C -0.09 -1.14 9.78 -39.51 -0.39 -1.53 16 26 C -0.11 -1.62 5.74 -106.80 -0.61 -2.24 16 27 C -0.05 -0.79 9.54 -39.23 -0.37 -1.17 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.03 0.83 6.07 -51.93 -0.31 0.51 16 30 H 0.03 0.65 5.06 -51.93 -0.26 0.39 16 31 H 0.09 1.75 6.08 -51.93 -0.32 1.43 16 32 H 0.07 1.10 7.80 -51.93 -0.41 0.69 16 33 H 0.15 2.95 8.06 -52.49 -0.42 2.53 16 34 H 0.14 1.85 8.06 -52.48 -0.42 1.42 16 35 H 0.19 1.93 8.06 -52.49 -0.42 1.50 16 36 H 0.07 1.27 6.60 -51.93 -0.34 0.93 16 37 H 0.07 1.00 7.80 -51.93 -0.40 0.59 16 38 H 0.17 3.53 7.79 -52.49 -0.41 3.12 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -30.22 355.71 -9.92 -40.14 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.32 Total: 7.55 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -4.92 Total: -21.16 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.45 Total: -45.22 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: 0.06 Total: -2.98 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.66 Total: 16.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.22 -9.92 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106116343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.058 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds