Wall clock time and date at job start Tue Mar 31 2020 13:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86811 * 119.99779 * 2 1 4 4 H 1.48498 * 109.46717 * 269.99697 * 3 2 1 5 5 H 1.48500 * 109.46801 * 29.99622 * 3 2 1 6 6 H 1.48495 * 109.47221 * 149.99875 * 3 2 1 7 7 C 1.39017 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99708 * 179.97438 * 7 2 1 9 9 N 1.36899 * 119.99880 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99867 * 179.97438 * 9 7 2 11 11 O 1.21633 * 120.00210 * 359.97438 * 10 9 7 12 12 C 1.47417 * 119.99973 * 179.97438 * 10 9 7 13 13 C 1.39870 * 120.07178 * 0.25123 * 12 10 9 14 14 C 1.37111 * 119.92329 * 180.27017 * 13 12 10 15 15 C 1.39248 * 120.07468 * 359.45943 * 14 13 12 16 16 N 1.39097 * 119.92987 * 180.27666 * 15 14 13 17 17 C 1.46921 * 120.54772 * 112.38454 * 16 15 14 18 18 C 1.53427 * 107.79027 * 224.62669 * 17 16 15 19 19 C 1.52859 * 108.83974 * 296.75278 * 18 17 16 20 20 C 1.50595 * 110.48721 * 51.34692 * 19 18 17 21 21 C 1.38487 * 118.93832 * 159.50189 * 20 19 18 22 22 C 1.38125 * 120.31157 * 179.83611 * 21 20 19 23 23 C 1.38317 * 120.16215 * 0.02562 * 22 21 20 24 24 C 1.38019 * 119.91125 * 0.06757 * 23 22 21 25 25 C 1.38746 * 121.52510 * 339.18900 * 20 19 18 26 26 C 1.39250 * 120.14627 * 0.29157 * 15 14 13 27 27 C 1.37109 * 120.07443 * 359.97438 * 26 15 14 28 28 H 0.96996 * 120.00450 * 359.97438 * 1 2 3 29 29 H 0.97006 * 119.99773 * 359.97438 * 9 7 2 30 30 H 1.08000 * 120.04029 * 0.02562 * 13 12 10 31 31 H 1.07999 * 119.96197 * 179.73164 * 14 13 12 32 32 H 1.08998 * 109.79721 * 344.19551 * 17 16 15 33 33 H 1.08999 * 109.79544 * 105.05165 * 17 16 15 34 34 H 1.09001 * 109.58020 * 56.56261 * 18 17 16 35 35 H 1.09004 * 109.57646 * 176.81969 * 18 17 16 36 36 H 1.09002 * 109.30167 * 171.65909 * 19 18 17 37 37 H 1.09002 * 109.30124 * 291.03373 * 19 18 17 38 38 H 1.08004 * 119.84431 * 359.86230 * 21 20 19 39 39 H 1.07998 * 119.92109 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.04210 * 180.02562 * 23 22 21 41 41 H 1.07997 * 119.98271 * 180.02562 * 24 23 22 42 42 H 1.08007 * 119.96005 * 180.02562 * 26 15 14 43 43 H 1.08004 * 120.03509 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6179 0.0000 4 1 2.4953 2.0464 -1.4001 5 1 1.4451 2.6527 0.7000 6 1 3.5453 1.4404 0.7000 7 6 2.0090 -1.2039 0.0005 8 1 3.0890 -1.2038 0.0001 9 7 1.3246 -2.3895 0.0005 10 6 1.9985 -3.5566 0.0005 11 8 3.2148 -3.5566 0.0001 12 6 1.2615 -4.8333 0.0011 13 6 -0.1372 -4.8352 -0.0037 14 6 -0.8196 -6.0244 0.0025 15 6 -0.1218 -7.2294 0.0021 16 7 -0.8172 -8.4341 0.0025 17 6 -0.7738 -9.3217 -1.1674 18 6 -2.2037 -9.8054 -1.4421 19 6 -2.6848 -10.6278 -0.2467 20 6 -2.4767 -9.8656 1.0354 21 6 -3.2109 -10.2228 2.1540 22 6 -3.0402 -9.5451 3.3454 23 6 -2.1339 -8.5036 3.4289 24 6 -1.3994 -8.1397 2.3185 25 6 -1.5650 -8.8231 1.1198 26 6 1.2707 -7.2311 0.0016 27 6 1.9593 -6.0454 0.0010 28 1 -0.4850 0.8400 0.0004 29 1 0.3545 -2.3895 0.0005 30 1 -0.6791 -3.9010 -0.0082 31 1 -1.8996 -6.0265 0.0032 32 1 -0.3967 -8.7751 -2.0318 33 1 -0.1288 -10.1754 -0.9594 34 1 -2.8595 -8.9461 -1.5818 35 1 -2.2143 -10.4227 -2.3404 36 1 -3.7453 -10.8500 -0.3656 37 1 -2.1264 -11.5629 -0.2046 38 1 -3.9200 -11.0353 2.0946 39 1 -3.6158 -9.8292 4.2140 40 1 -2.0017 -7.9753 4.3616 41 1 -0.6912 -7.3269 2.3825 42 1 1.8089 -8.1675 0.0009 43 1 3.0393 -6.0475 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124674917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:12 Heat of formation + Delta-G solvation = 3.468667 kcal Electronic energy + Delta-G solvation = -25853.142918 eV Core-core repulsion = 22247.800567 eV Total energy + Delta-G solvation = -3605.342350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64691 -40.63064 -39.17549 -37.31241 -36.14938 -35.05008 -33.51416 -32.07189 -31.46634 -31.28549 -30.06009 -27.32004 -26.03685 -24.40504 -24.22810 -23.35215 -22.66367 -21.25972 -20.40166 -20.20547 -18.76020 -18.19462 -17.41861 -17.00521 -16.69322 -16.35820 -15.88891 -15.72180 -15.57285 -15.56628 -15.14334 -14.76936 -14.65521 -14.45961 -14.37570 -14.15943 -13.81334 -13.61942 -13.44262 -13.37954 -13.11506 -12.94843 -12.54965 -12.37699 -12.23058 -12.13569 -12.00484 -11.62809 -11.61797 -11.54750 -10.88720 -10.56226 -10.16320 -10.09221 -9.79367 -9.56885 -8.58450 -8.26155 -6.03390 -0.22030 0.36647 0.52094 0.69373 1.37923 1.39723 1.53380 1.97864 2.03372 2.24603 2.76349 2.95045 3.08443 3.26608 3.76661 3.82796 3.91003 3.93285 4.09365 4.10933 4.17943 4.22694 4.32918 4.41614 4.46254 4.50918 4.59076 4.65471 4.70781 4.81426 4.88436 4.97204 5.03964 5.08374 5.19296 5.24763 5.27948 5.32460 5.38094 5.42004 5.46690 5.63080 5.72128 5.75417 5.90953 6.01366 6.43762 6.46646 6.59675 6.99240 7.39758 7.96449 8.58763 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.002716 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.330308 B =10306.970053 C =10776.940883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.009 4.009 3 Si 1.000 3.000 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.338 4.338 8 H 0.084 0.916 9 N -0.551 5.551 10 C 0.463 3.537 11 O -0.639 6.639 12 C -0.127 4.127 13 C -0.085 4.085 14 C -0.122 4.122 15 C 0.173 3.827 16 N -0.589 5.589 17 C 0.120 3.880 18 C -0.131 4.131 19 C -0.069 4.069 20 C -0.153 4.153 21 C -0.085 4.085 22 C -0.171 4.171 23 C -0.095 4.095 24 C -0.198 4.198 25 C 0.195 3.805 26 C -0.124 4.124 27 C -0.065 4.065 28 H 0.283 0.717 29 H 0.398 0.602 30 H 0.126 0.874 31 H 0.136 0.864 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.103 0.897 42 H 0.148 0.852 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.051 -23.014 0.305 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.102 0.898 9 N -0.185 5.185 10 C 0.253 3.747 11 O -0.529 6.529 12 C -0.130 4.130 13 C -0.105 4.105 14 C -0.142 4.142 15 C 0.079 3.921 16 N -0.297 5.297 17 C -0.001 4.001 18 C -0.169 4.169 19 C -0.106 4.106 20 C -0.157 4.157 21 C -0.103 4.103 22 C -0.190 4.190 23 C -0.113 4.113 24 C -0.220 4.220 25 C 0.097 3.903 26 C -0.143 4.143 27 C -0.085 4.085 28 H 0.093 0.907 29 H 0.233 0.767 30 H 0.143 0.857 31 H 0.153 0.847 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.146 0.854 41 H 0.121 0.879 42 H 0.166 0.834 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.360 -22.809 0.153 25.052 hybrid contribution 0.217 1.446 0.184 1.474 sum -10.143 -21.363 0.337 23.651 Atomic orbital electron populations 1.69648 1.07051 1.29990 1.48264 1.26205 0.96622 1.02750 0.95465 0.84835 0.77917 0.76100 0.78946 1.19246 1.19107 1.19545 1.19811 0.93119 0.83761 1.50032 0.89761 1.41916 1.09586 1.04772 1.62256 1.18438 0.87330 0.84626 0.84324 1.90550 1.15197 1.88015 1.59106 1.20089 0.94141 0.93366 1.05424 1.21121 0.92445 0.98946 0.98016 1.21158 1.00457 0.90980 1.01583 1.17523 0.90157 0.85451 0.98929 1.43963 1.51882 1.18662 1.15145 1.21905 0.98428 0.93231 0.86524 1.21863 0.95161 1.00557 0.99271 1.20368 1.02895 0.97620 0.89734 1.19707 0.98478 0.99496 0.97984 1.21194 0.98309 0.99238 0.91559 1.21194 1.00953 0.97814 0.99077 1.21120 0.95388 0.97080 0.97728 1.20866 1.04495 1.03464 0.93164 1.17763 0.91658 0.94742 0.86139 1.21226 0.93216 0.98071 1.01826 1.20967 1.00454 0.90610 0.96451 0.90712 0.76677 0.85650 0.84659 0.89786 0.90795 0.92341 0.87665 0.89143 0.89709 0.83590 0.84348 0.85360 0.87889 0.83423 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.98 13.05 21.68 0.28 -48.69 16 2 C -0.01 -0.49 5.50 84.95 0.47 -0.02 16 3 Si 1.00 42.61 29.55 68.60 2.03 44.63 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.34 -19.63 9.68 84.09 0.81 -18.81 16 8 H 0.08 5.18 7.15 -2.91 -0.02 5.16 16 9 N -0.55 -29.91 5.23 -310.00 -1.62 -31.53 16 10 C 0.46 24.29 7.71 86.66 0.67 24.96 16 11 O -0.64 -37.91 15.91 -4.13 -0.07 -37.97 16 12 C -0.13 -5.24 5.88 -20.07 -0.12 -5.36 16 13 C -0.09 -3.03 9.51 22.40 0.21 -2.82 16 14 C -0.12 -3.62 9.19 22.25 0.20 -3.42 16 15 C 0.17 4.71 3.93 38.48 0.15 4.86 16 16 N -0.59 -13.45 2.89 -505.29 -1.46 -14.91 16 17 C 0.12 1.99 6.43 86.44 0.56 2.54 16 18 C -0.13 -1.68 6.11 30.69 0.19 -1.49 16 19 C -0.07 -0.88 5.78 29.77 0.17 -0.70 16 20 C -0.15 -2.89 5.76 -19.72 -0.11 -3.00 16 21 C -0.08 -1.42 9.66 22.30 0.22 -1.20 16 22 C -0.17 -3.10 10.04 22.26 0.22 -2.88 16 23 C -0.09 -2.08 10.05 22.24 0.22 -1.86 16 24 C -0.20 -5.11 9.05 22.39 0.20 -4.91 16 25 C 0.20 4.61 6.25 38.14 0.24 4.85 16 26 C -0.12 -3.50 9.83 22.25 0.22 -3.28 16 27 C -0.06 -2.31 9.56 22.40 0.21 -2.10 16 28 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.40 20.38 5.91 -92.70 -0.55 19.83 16 30 H 0.13 4.51 6.39 -2.91 -0.02 4.49 16 31 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.08 1.36 7.98 -2.39 -0.02 1.34 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.09 0.88 8.12 -2.39 -0.02 0.86 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 39 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 41 H 0.10 3.01 6.80 -2.91 -0.02 2.99 16 42 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 43 H 0.13 4.68 7.64 -2.91 -0.02 4.65 16 Total: -1.00 -69.51 359.02 4.39 -65.12 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: 0.49 Total: 37.98 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 4.74 Total: -14.63 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -2.80 Total: -95.13 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.07 Total: -37.97 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -69.51 4.39 -65.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124674917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.590 kcal (2) G-P(sol) polarization free energy of solvation -69.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds