Wall clock time and date at job start Tue Mar 31 2020 13:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00207 * 2 1 4 4 H 1.48494 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47138 * 300.00137 * 3 2 1 6 6 H 1.48503 * 109.47051 * 60.00375 * 3 2 1 7 7 C 1.37879 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99538 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46812 * 175.25947 * 9 7 2 11 11 C 1.46905 * 110.99946 * 296.56106 * 10 9 7 12 12 C 1.50697 * 109.47155 * 293.95722 * 11 10 9 13 13 C 1.34001 * 124.92680 * 90.62250 * 12 11 10 14 14 C 1.46784 * 106.18677 * 180.02562 * 13 12 11 15 15 C 1.39406 * 134.37139 * 179.31595 * 14 13 12 16 16 C 1.36725 * 119.71732 * 179.97438 * 15 14 13 17 17 C 1.38752 * 120.41988 * 0.02562 * 16 15 14 18 18 C 1.37841 * 120.67981 * 359.97438 * 17 16 15 19 19 C 1.38943 * 119.82365 * 0.27343 * 18 17 16 20 20 O 1.34454 * 124.92432 * 269.97739 * 12 11 10 21 21 C 1.46895 * 111.00229 * 60.51656 * 10 9 7 22 22 C 1.50703 * 109.47356 * 72.10267 * 21 10 9 23 23 C 1.38668 * 120.42267 * 263.84253 * 22 21 10 24 24 C 1.38625 * 118.42247 * 179.78403 * 23 22 21 25 25 C 1.38227 * 119.15873 * 0.50386 * 24 23 22 26 26 N 1.31851 * 120.76264 * 359.73775 * 25 24 23 27 27 C 1.31880 * 121.72916 * 359.97438 * 26 25 24 28 28 H 0.97008 * 119.99827 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47666 * 55.25827 * 9 7 2 30 30 H 1.09003 * 109.46881 * 295.25288 * 9 7 2 31 31 H 1.08997 * 109.47296 * 173.95411 * 11 10 9 32 32 H 1.08995 * 109.46915 * 53.95697 * 11 10 9 33 33 H 1.08005 * 126.90204 * 359.37179 * 13 12 11 34 34 H 1.08005 * 120.13953 * 0.02562 * 15 14 13 35 35 H 1.08003 * 119.79377 * 180.02562 * 16 15 14 36 36 H 1.07995 * 119.65761 * 179.97438 * 17 16 15 37 37 H 1.08009 * 120.09136 * 180.02562 * 18 17 16 38 38 H 1.09008 * 109.47488 * 192.10557 * 21 10 9 39 39 H 1.08997 * 109.47168 * 312.10656 * 21 10 9 40 40 H 1.08002 * 120.78460 * 0.02562 * 23 22 21 41 41 H 1.08001 * 120.41687 * 180.22281 * 24 23 22 42 42 H 1.07998 * 119.61491 * 179.74738 * 25 24 23 43 43 H 1.08000 * 119.61761 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2015 -3.6133 -0.1165 11 6 2.9203 -3.5621 -1.3967 12 6 1.9517 -3.7992 -2.5265 13 6 1.2774 -2.8387 -3.1733 14 6 0.4612 -3.5216 -4.1843 15 6 -0.4510 -3.0978 -5.1495 16 6 -1.0576 -4.0176 -5.9590 17 6 -0.7711 -5.3686 -5.8252 18 6 0.1282 -5.8063 -4.8765 19 6 0.7518 -4.8885 -4.0402 20 8 1.6481 -5.0042 -3.0400 21 6 3.1395 -3.6237 1.0139 22 6 2.4186 -4.0672 2.2608 23 6 1.9131 -3.1310 3.1502 24 6 1.2533 -3.5850 4.2817 25 6 1.1313 -4.9460 4.4897 26 7 1.6290 -5.8077 3.6246 27 6 2.2577 -5.4119 2.5349 28 1 -0.4850 0.8401 0.0004 29 1 0.5624 -2.5204 -0.8464 30 1 0.6892 -2.5951 0.9275 31 1 3.6914 -4.3324 -1.4114 32 1 3.3832 -2.5824 -1.5145 33 1 1.3174 -1.7766 -2.9813 34 1 -0.6770 -2.0472 -5.2578 35 1 -1.7642 -3.6906 -6.7075 36 1 -1.2576 -6.0846 -6.4709 37 1 0.3445 -6.8602 -4.7808 38 1 3.9565 -4.3134 0.8018 39 1 3.5399 -2.6210 1.1630 40 1 2.0273 -2.0734 2.9637 41 1 0.8438 -2.8840 4.9940 42 1 0.6223 -5.3078 5.3708 43 1 2.6517 -6.1474 1.8492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135270210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:41 Heat of formation + Delta-G solvation = 72.035675 kcal Electronic energy + Delta-G solvation = -26394.135050 eV Core-core repulsion = 22791.765988 eV Total energy + Delta-G solvation = -3602.369062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.00452 -39.75466 -37.70948 -36.92544 -32.84408 -32.66637 -31.94878 -31.23688 -30.13089 -29.43323 -27.35998 -26.14172 -24.38122 -23.08167 -22.68761 -22.25859 -21.32021 -20.62687 -19.85962 -16.98036 -16.86760 -16.50986 -16.34741 -15.93691 -15.80719 -15.24722 -14.79116 -14.65476 -14.52503 -13.96554 -13.73969 -13.48974 -13.21582 -13.04850 -12.62867 -12.53850 -12.50168 -12.20987 -12.00034 -11.87435 -11.60524 -11.17425 -11.01947 -11.01119 -10.77228 -10.58290 -10.42195 -10.19966 -9.86407 -9.61464 -9.29409 -9.05972 -8.57683 -8.55439 -8.32342 -7.75007 -7.37436 -6.15548 -4.26266 1.21295 1.53497 1.64011 1.75636 2.83061 3.14252 3.15860 3.26030 3.26830 3.99699 4.21296 4.27561 4.76972 4.82510 4.98559 5.08191 5.11742 5.14648 5.22919 5.41466 5.44633 5.47055 5.52755 5.56055 5.59786 5.72871 5.77139 5.81279 6.07069 6.13331 6.15562 6.19407 6.28507 6.39168 6.50176 6.57004 6.60970 6.67274 6.84170 6.94418 6.99835 7.05457 7.15723 7.41622 7.63806 7.77903 7.83224 8.01975 8.12319 8.35642 8.83860 9.40901 10.89031 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009438 B = 0.004650 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.045388 B = 6019.789960 C = 8118.671760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.554 4.554 8 H 0.058 0.942 9 C 0.179 3.821 10 N -0.535 5.535 11 C 0.133 3.867 12 C 0.060 3.940 13 C -0.187 4.187 14 C -0.123 4.123 15 C -0.071 4.071 16 C -0.144 4.144 17 C -0.106 4.106 18 C -0.109 4.109 19 C 0.048 3.952 20 O -0.192 6.192 21 C 0.098 3.902 22 C -0.107 4.107 23 C -0.053 4.053 24 C -0.178 4.178 25 C 0.083 3.917 26 N -0.495 5.495 27 C 0.108 3.892 28 H 0.263 0.737 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.164 0.836 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.141 0.859 41 H 0.128 0.872 42 H 0.147 0.853 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 -7.389 -3.710 8.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.593 4.593 8 H 0.076 0.924 9 C 0.053 3.947 10 N -0.258 5.258 11 C 0.005 3.995 12 C 0.013 3.987 13 C -0.207 4.207 14 C -0.124 4.124 15 C -0.089 4.089 16 C -0.163 4.163 17 C -0.124 4.124 18 C -0.128 4.128 19 C 0.000 4.000 20 O -0.093 6.093 21 C -0.030 4.030 22 C -0.109 4.109 23 C -0.079 4.079 24 C -0.198 4.198 25 C -0.074 4.074 26 N -0.204 5.204 27 C -0.049 4.049 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.181 0.819 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.158 0.842 41 H 0.146 0.854 42 H 0.164 0.836 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.180 -8.864 -3.438 9.754 hybrid contribution 0.599 2.994 -0.162 3.058 sum 2.779 -5.870 -3.600 7.425 Atomic orbital electron populations 1.69962 1.05956 1.26796 1.49200 1.24909 0.94647 0.98895 0.94823 0.86696 0.80185 0.84277 0.77838 1.19779 1.20902 1.20951 1.21662 0.93122 0.91869 1.52644 0.92361 1.19928 0.91139 0.84907 0.98687 1.62534 1.16649 1.47922 0.98738 1.20485 0.91588 1.01538 0.85905 1.22262 0.99438 0.80901 0.96116 1.22436 0.99829 1.00973 0.97474 1.20084 1.00232 0.93144 0.98929 1.20310 0.94828 0.99973 0.93768 1.20676 1.01676 0.93071 1.00830 1.20792 0.97725 0.95947 0.97948 1.19855 0.98777 0.98121 0.96003 1.19642 0.93731 0.94980 0.91662 1.83943 1.50984 1.32553 1.41840 1.20866 0.93206 1.00767 0.88194 1.20778 0.99401 0.94208 0.96535 1.21722 0.93063 1.01026 0.92129 1.22091 1.01459 0.97090 0.99150 1.22582 0.97119 0.89846 0.97861 1.67624 1.09645 1.39580 1.03560 1.22551 0.94879 0.94070 0.93398 0.92750 0.93868 0.95015 0.90731 0.90022 0.81863 0.85776 0.85901 0.85390 0.85569 0.91497 0.91786 0.84166 0.85408 0.83609 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.10 13.29 55.43 0.74 -23.36 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 3 Si 0.88 19.74 29.54 -169.99 -5.02 14.72 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.55 -13.37 7.34 -34.44 -0.25 -13.63 16 8 H 0.06 1.37 5.95 -52.49 -0.31 1.06 16 9 C 0.18 4.20 4.67 -4.97 -0.02 4.18 16 10 N -0.53 -10.47 4.65 -238.96 -1.11 -11.58 16 11 C 0.13 2.36 5.29 -4.97 -0.03 2.34 16 12 C 0.06 1.15 6.15 -35.80 -0.22 0.93 16 13 C -0.19 -3.68 9.50 -37.62 -0.36 -4.04 16 14 C -0.12 -2.25 6.40 -105.16 -0.67 -2.92 16 15 C -0.07 -1.10 10.05 -39.69 -0.40 -1.50 16 16 C -0.14 -1.88 9.98 -39.94 -0.40 -2.28 16 17 C -0.11 -1.32 10.01 -39.54 -0.40 -1.72 16 18 C -0.11 -1.57 10.07 -39.47 -0.40 -1.96 16 19 C 0.05 0.85 7.42 -38.47 -0.29 0.56 16 20 O -0.19 -3.63 10.58 3.92 0.04 -3.59 16 21 C 0.10 1.68 4.97 -4.98 -0.02 1.65 16 22 C -0.11 -1.84 4.90 -104.48 -0.51 -2.35 16 23 C -0.05 -0.92 8.73 -39.28 -0.34 -1.26 16 24 C -0.18 -2.72 10.11 -39.44 -0.40 -3.12 16 25 C 0.08 1.25 11.18 -17.55 -0.20 1.05 16 26 N -0.50 -8.36 10.36 -13.25 -0.14 -8.50 16 27 C 0.11 1.80 10.88 -17.55 -0.19 1.61 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.04 1.14 6.12 -51.93 -0.32 0.82 16 30 H 0.03 0.83 6.66 -51.93 -0.35 0.48 16 31 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 32 H 0.08 1.49 6.62 -51.93 -0.34 1.15 16 33 H 0.16 3.39 8.06 -52.48 -0.42 2.97 16 34 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 35 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 38 H 0.07 0.97 7.79 -51.92 -0.40 0.56 16 39 H 0.06 1.17 6.03 -51.93 -0.31 0.86 16 40 H 0.14 2.56 8.06 -52.49 -0.42 2.14 16 41 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 360.70 15.07 5.44 5.44 Total: -1.00 -29.02 360.70 -10.63 -39.65 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.39 Total: 7.98 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -5.19 Total: -20.74 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.51 Total: -43.45 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: 0.04 Total: -3.59 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.02 -10.63 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135270210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.685 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds