Wall clock time and date at job start Tue Mar 31 2020 13:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00207 * 2 1 4 4 H 1.48494 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47138 * 300.00137 * 3 2 1 6 6 H 1.48503 * 109.47051 * 60.00375 * 3 2 1 7 7 C 1.37879 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99538 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46812 * 175.25947 * 9 7 2 11 11 C 1.46905 * 110.99946 * 296.56106 * 10 9 7 12 12 C 1.50697 * 109.47155 * 293.95722 * 11 10 9 13 13 C 1.34001 * 124.92680 * 90.62250 * 12 11 10 14 14 C 1.46784 * 106.18677 * 180.02562 * 13 12 11 15 15 C 1.39406 * 134.37139 * 179.31595 * 14 13 12 16 16 C 1.36725 * 119.71732 * 179.97438 * 15 14 13 17 17 C 1.38752 * 120.41988 * 0.02562 * 16 15 14 18 18 C 1.37841 * 120.67981 * 359.97438 * 17 16 15 19 19 C 1.38943 * 119.82365 * 0.27343 * 18 17 16 20 20 O 1.34454 * 124.92432 * 269.97739 * 12 11 10 21 21 C 1.46895 * 111.00229 * 60.51656 * 10 9 7 22 22 C 1.50703 * 109.47356 * 72.10267 * 21 10 9 23 23 C 1.38668 * 120.42267 * 263.84253 * 22 21 10 24 24 C 1.38625 * 118.42247 * 179.78403 * 23 22 21 25 25 C 1.38227 * 119.15873 * 0.50386 * 24 23 22 26 26 N 1.31851 * 120.76264 * 359.73775 * 25 24 23 27 27 C 1.31880 * 121.72916 * 359.97438 * 26 25 24 28 28 H 0.97008 * 119.99827 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47666 * 55.25827 * 9 7 2 30 30 H 1.09003 * 109.46881 * 295.25288 * 9 7 2 31 31 H 1.08997 * 109.47296 * 173.95411 * 11 10 9 32 32 H 1.08995 * 109.46915 * 53.95697 * 11 10 9 33 33 H 1.08005 * 126.90204 * 359.37179 * 13 12 11 34 34 H 1.08005 * 120.13953 * 0.02562 * 15 14 13 35 35 H 1.08003 * 119.79377 * 180.02562 * 16 15 14 36 36 H 1.07995 * 119.65761 * 179.97438 * 17 16 15 37 37 H 1.08009 * 120.09136 * 180.02562 * 18 17 16 38 38 H 1.09008 * 109.47488 * 192.10557 * 21 10 9 39 39 H 1.08997 * 109.47168 * 312.10656 * 21 10 9 40 40 H 1.08002 * 120.78460 * 0.02562 * 23 22 21 41 41 H 1.08001 * 120.41687 * 180.22281 * 24 23 22 42 42 H 1.07998 * 119.61491 * 179.74738 * 25 24 23 43 43 H 1.08000 * 119.61761 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2015 -3.6133 -0.1165 11 6 2.9203 -3.5621 -1.3967 12 6 1.9517 -3.7992 -2.5265 13 6 1.2774 -2.8387 -3.1733 14 6 0.4612 -3.5216 -4.1843 15 6 -0.4510 -3.0978 -5.1495 16 6 -1.0576 -4.0176 -5.9590 17 6 -0.7711 -5.3686 -5.8252 18 6 0.1282 -5.8063 -4.8765 19 6 0.7518 -4.8885 -4.0402 20 8 1.6481 -5.0042 -3.0400 21 6 3.1395 -3.6237 1.0139 22 6 2.4186 -4.0672 2.2608 23 6 1.9131 -3.1310 3.1502 24 6 1.2533 -3.5850 4.2817 25 6 1.1313 -4.9460 4.4897 26 7 1.6290 -5.8077 3.6246 27 6 2.2577 -5.4119 2.5349 28 1 -0.4850 0.8401 0.0004 29 1 0.5624 -2.5204 -0.8464 30 1 0.6892 -2.5951 0.9275 31 1 3.6914 -4.3324 -1.4114 32 1 3.3832 -2.5824 -1.5145 33 1 1.3174 -1.7766 -2.9813 34 1 -0.6770 -2.0472 -5.2578 35 1 -1.7642 -3.6906 -6.7075 36 1 -1.2576 -6.0846 -6.4709 37 1 0.3445 -6.8602 -4.7808 38 1 3.9565 -4.3134 0.8018 39 1 3.5399 -2.6210 1.1630 40 1 2.0273 -2.0734 2.9637 41 1 0.8438 -2.8840 4.9940 42 1 0.6223 -5.3078 5.3708 43 1 2.6517 -6.1474 1.8492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135270210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:40 Heat of formation + Delta-G solvation = 56.214218 kcal Electronic energy + Delta-G solvation = -26394.821120 eV Core-core repulsion = 22791.765988 eV Total energy + Delta-G solvation = -3603.055131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.34772 -41.04309 -38.97272 -38.39204 -34.64698 -34.14023 -33.26410 -32.51220 -31.32457 -30.81764 -29.13202 -27.46507 -26.09963 -24.37720 -24.05045 -23.58367 -22.58044 -22.01226 -21.40837 -18.67132 -18.23673 -17.83530 -17.67753 -17.35785 -17.13241 -16.67986 -16.34217 -16.10476 -15.82198 -15.52326 -15.03943 -14.79536 -14.54150 -14.38500 -14.13274 -13.99061 -13.86350 -13.70375 -13.28068 -13.15128 -12.94742 -12.85536 -12.80329 -12.42896 -12.30977 -12.10105 -11.98264 -11.79351 -11.69135 -10.97979 -10.64508 -10.54895 -10.35267 -9.84459 -9.53624 -9.16492 -8.94669 -8.12394 -6.30138 -0.00523 0.28547 0.44207 0.45359 1.35127 1.39512 1.42596 1.47784 1.81424 2.37400 2.81549 2.92229 3.14711 3.43904 3.59964 3.66712 3.79238 3.98915 4.09507 4.13058 4.21891 4.22559 4.25536 4.31170 4.36186 4.47943 4.52740 4.57429 4.73497 4.80787 4.87421 4.90118 5.00303 5.02532 5.22331 5.32151 5.33687 5.38925 5.41178 5.52634 5.53373 5.56335 5.78821 5.83221 5.88425 6.01277 6.19865 6.31435 6.39182 6.89184 7.09816 7.40632 8.90637 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009438 B = 0.004650 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.045388 B = 6019.789960 C = 8118.671760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.022 3.978 3 Si 0.944 3.056 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.202 3.798 10 N -0.537 5.537 11 C 0.135 3.865 12 C 0.052 3.948 13 C -0.210 4.210 14 C -0.154 4.154 15 C -0.094 4.094 16 C -0.132 4.132 17 C -0.091 4.091 18 C -0.114 4.114 19 C 0.022 3.978 20 O -0.200 6.200 21 C 0.101 3.899 22 C -0.121 4.121 23 C -0.073 4.073 24 C -0.178 4.178 25 C 0.084 3.916 26 N -0.510 5.510 27 C 0.104 3.896 28 H 0.261 0.739 29 H 0.009 0.991 30 H 0.002 0.998 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.127 0.873 35 H 0.160 0.840 36 H 0.175 0.825 37 H 0.153 0.847 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.121 0.879 41 H 0.152 0.848 42 H 0.182 0.818 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.667 -9.130 -4.533 10.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.076 3.924 10 N -0.261 5.261 11 C 0.008 3.992 12 C 0.004 3.996 13 C -0.230 4.230 14 C -0.154 4.154 15 C -0.112 4.112 16 C -0.150 4.150 17 C -0.108 4.108 18 C -0.133 4.133 19 C -0.025 4.025 20 O -0.102 6.102 21 C -0.026 4.026 22 C -0.123 4.123 23 C -0.099 4.099 24 C -0.197 4.197 25 C -0.073 4.073 26 N -0.219 5.219 27 C -0.053 4.053 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.020 0.980 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.178 0.822 36 H 0.192 0.808 37 H 0.170 0.830 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.139 0.861 41 H 0.170 0.830 42 H 0.199 0.801 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.289 -10.615 -4.264 11.666 hybrid contribution 0.476 3.453 0.023 3.486 sum 2.764 -7.162 -4.241 8.771 Atomic orbital electron populations 1.70096 1.07560 1.27356 1.51110 1.25629 0.95223 1.02121 0.94817 0.85722 0.79486 0.80412 0.77374 1.18591 1.21228 1.20936 1.21858 0.93368 0.92135 1.50766 0.91685 1.19428 0.91295 0.86236 0.95484 1.62411 1.17431 1.45855 1.00386 1.20541 0.91806 1.02255 0.84627 1.22357 0.99776 0.81058 0.96394 1.22340 1.01411 1.00059 0.99179 1.20294 1.01580 0.93654 0.99913 1.20588 0.95232 1.01119 0.94247 1.21166 1.00770 0.93017 1.00063 1.21390 0.95982 0.96522 0.96934 1.20366 0.98464 0.98981 0.95446 1.20201 0.94412 0.95605 0.92302 1.83892 1.51685 1.32120 1.42538 1.20914 0.93430 1.00930 0.87366 1.20817 1.00194 0.94687 0.96601 1.21747 0.94372 1.00276 0.93546 1.22370 1.00600 0.97982 0.98754 1.23156 0.96203 0.89525 0.98372 1.67689 1.10089 1.40191 1.03952 1.22778 0.94811 0.93967 0.93755 0.92986 0.97333 0.97999 0.87402 0.90861 0.84360 0.85465 0.82203 0.80774 0.82971 0.88168 0.93172 0.86058 0.83004 0.80133 0.81752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.73 13.29 21.45 0.28 -52.45 16 2 C 0.02 1.16 5.46 84.66 0.46 1.63 16 3 Si 0.94 41.60 29.54 68.60 2.03 43.63 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.54 -27.21 7.34 25.60 0.19 -27.02 16 8 H 0.07 3.13 5.95 -2.91 -0.02 3.11 16 9 C 0.20 10.01 4.67 85.56 0.40 10.41 16 10 N -0.54 -21.57 4.65 -909.94 -4.23 -25.80 16 11 C 0.14 4.90 5.29 85.56 0.45 5.36 16 12 C 0.05 2.07 6.15 24.72 0.15 2.22 16 13 C -0.21 -8.87 9.50 23.54 0.22 -8.65 16 14 C -0.15 -5.83 6.40 -20.21 -0.13 -5.96 16 15 C -0.09 -2.92 10.05 22.20 0.22 -2.70 16 16 C -0.13 -3.08 9.98 22.04 0.22 -2.86 16 17 C -0.09 -1.91 10.01 22.30 0.22 -1.68 16 18 C -0.11 -3.03 10.07 22.34 0.23 -2.80 16 19 C 0.02 0.78 7.42 22.99 0.17 0.95 16 20 O -0.20 -7.74 10.58 -8.88 -0.09 -7.84 16 21 C 0.10 3.47 4.97 85.56 0.42 3.89 16 22 C -0.12 -4.18 4.90 -19.77 -0.10 -4.27 16 23 C -0.07 -2.57 8.73 22.46 0.20 -2.37 16 24 C -0.18 -5.28 10.11 22.36 0.23 -5.06 16 25 C 0.08 2.39 11.18 84.69 0.95 3.34 16 26 N -0.51 -16.55 10.36 -195.85 -2.03 -18.58 16 27 C 0.10 3.36 10.88 84.67 0.92 4.28 16 28 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 29 H 0.01 0.48 6.12 -2.39 -0.01 0.47 16 30 H 0.00 0.11 6.66 -2.39 -0.02 0.09 16 31 H 0.11 3.16 7.86 -2.39 -0.02 3.14 16 32 H 0.07 2.77 6.62 -2.39 -0.02 2.75 16 33 H 0.14 6.37 8.06 -2.91 -0.02 6.35 16 34 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.10 2.74 7.79 -2.38 -0.02 2.72 16 39 H 0.05 1.86 6.03 -2.39 -0.01 1.84 16 40 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 42 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 43 H 0.17 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -66.67 360.70 2.41 -64.25 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 1.02 Total: 28.06 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 5.43 Total: -31.28 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -5.97 Total: -96.82 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.09 Total: -7.84 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -66.67 2.41 -64.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135270210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.469 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds