Wall clock time and date at job start Tue Mar 31 2020 13:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48496 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46824 * 299.99952 * 3 2 1 6 6 H 1.48498 * 109.47027 * 59.99313 * 3 2 1 7 7 C 1.37879 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99727 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46905 * 174.85569 * 9 7 2 11 11 H 1.09003 * 109.47174 * 54.20386 * 10 9 7 12 12 N 1.46498 * 109.47041 * 174.20254 * 10 9 7 13 13 C 1.34778 * 120.00126 * 278.67451 * 12 10 9 14 14 O 1.21689 * 119.99688 * 355.04438 * 13 12 10 15 15 C 1.46421 * 119.99776 * 175.03950 * 13 12 10 16 16 C 1.34808 * 119.99611 * 179.72556 * 15 13 12 17 17 C 1.47209 * 119.99967 * 180.27591 * 16 15 13 18 18 C 1.40267 * 120.58538 * 180.02562 * 17 16 15 19 19 C 1.38293 * 118.26706 * 179.97438 * 18 17 16 20 20 C 1.38388 * 119.33332 * 359.97438 * 19 18 17 21 21 N 1.31940 * 121.13858 * 0.02562 * 20 19 18 22 22 C 1.31654 * 121.90648 * 359.68207 * 21 20 19 23 23 C 1.50705 * 109.47027 * 294.20154 * 10 9 7 24 24 C 1.38231 * 119.99817 * 279.72645 * 23 10 9 25 25 C 1.38237 * 119.99419 * 179.79195 * 24 23 10 26 26 C 1.38240 * 120.00379 * 0.43619 * 25 24 23 27 27 C 1.38235 * 119.99766 * 359.81961 * 26 25 24 28 28 C 1.38232 * 119.99788 * 100.00240 * 23 10 9 29 29 H 0.96992 * 119.99918 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47080 * 54.86133 * 9 7 2 31 31 H 1.09001 * 109.47285 * 294.85439 * 9 7 2 32 32 H 0.97004 * 120.00007 * 98.67350 * 12 10 9 33 33 H 1.07994 * 120.00450 * 0.02562 * 15 13 12 34 34 H 1.08003 * 120.00467 * 0.27790 * 16 15 13 35 35 H 1.08006 * 120.86712 * 359.95631 * 18 17 16 36 36 H 1.07998 * 120.32794 * 180.02562 * 19 18 17 37 37 H 1.08004 * 119.43185 * 180.02562 * 20 19 18 38 38 H 1.07995 * 119.74365 * 180.29232 * 22 21 20 39 39 H 1.07994 * 120.00650 * 359.97438 * 24 23 10 40 40 H 1.08001 * 119.99976 * 180.27906 * 25 24 23 41 41 H 1.07997 * 119.99911 * 179.83212 * 26 25 24 42 42 H 1.07994 * 119.99921 * 179.97438 * 27 26 25 43 43 H 1.08007 * 120.00406 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2404 -3.6592 -0.1282 11 1 2.9959 -3.5809 0.6536 12 7 1.5240 -4.9295 0.0106 13 6 1.2205 -5.4017 1.2359 14 8 1.6192 -4.8204 2.2279 15 6 0.4110 -6.6140 1.3734 16 6 0.1121 -7.0894 2.5990 17 6 -0.6967 -8.3116 2.7373 18 6 -1.0154 -8.8167 4.0064 19 6 -1.7784 -9.9678 4.0805 20 6 -2.1996 -10.5784 2.9122 21 7 -1.8852 -10.0815 1.7311 22 6 -1.1663 -8.9857 1.6061 23 6 2.9071 -3.6033 -1.4786 24 6 2.2516 -4.0909 -2.5936 25 6 2.8615 -4.0357 -3.8330 26 6 4.1305 -3.5012 -3.9558 27 6 4.7880 -3.0184 -2.8397 28 6 4.1763 -3.0697 -1.6011 29 1 -0.4849 0.8400 -0.0004 30 1 0.5575 -2.5183 -0.8401 31 1 0.6949 -2.5977 0.9328 32 1 1.2682 -5.4309 -0.7795 33 1 0.0575 -7.1301 0.4931 34 1 0.4658 -6.5736 3.4795 35 1 -0.6736 -8.3199 4.9024 36 1 -2.0436 -10.3854 5.0406 37 1 -2.7959 -11.4771 2.9683 38 1 -0.9333 -8.6071 0.6219 39 1 1.2620 -4.5123 -2.4972 40 1 2.3477 -4.4126 -4.7050 41 1 4.6079 -3.4605 -4.9236 42 1 5.7795 -2.6012 -2.9356 43 1 4.6901 -2.6924 -0.7292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153143607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:03 Heat of formation + Delta-G solvation = 35.239547 kcal Electronic energy + Delta-G solvation = -25151.626763 eV Core-core repulsion = 21547.662102 eV Total energy + Delta-G solvation = -3603.964662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.37418 -39.63286 -38.50725 -35.30360 -34.46895 -32.84156 -32.54587 -31.21813 -30.45584 -29.86968 -28.57145 -25.52525 -24.31158 -23.75384 -22.37920 -22.20023 -21.51893 -19.70611 -19.45341 -17.82108 -17.31925 -16.69445 -16.21066 -15.95915 -15.47138 -15.00576 -14.75516 -14.60509 -14.30405 -14.11871 -14.06481 -14.04903 -13.42267 -13.31939 -12.96615 -12.80418 -12.48530 -12.19296 -12.13749 -11.96578 -11.53043 -11.17703 -10.95021 -10.86602 -10.70408 -10.63616 -10.03878 -9.94454 -9.93808 -9.75882 -9.60794 -9.11122 -8.68514 -8.48558 -8.47428 -8.34268 -8.02872 -5.99508 -4.00683 0.25052 0.95661 1.81496 1.85085 1.87584 3.32444 3.39516 3.42724 3.48269 3.60278 3.77237 4.11243 4.26994 4.46652 4.50644 4.57502 4.59841 4.72201 4.97879 5.15881 5.23679 5.27913 5.31538 5.37043 5.38997 5.49332 5.51984 5.71262 5.77993 5.90883 5.98595 6.13483 6.23937 6.26562 6.38548 6.39883 6.50683 6.71956 6.81312 6.86480 6.90241 7.15542 7.42973 7.62591 7.65509 7.69155 7.97490 8.01152 8.35986 8.66054 9.03449 9.62217 11.12257 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012575 B = 0.002906 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.092573 B = 9633.376393 C =11150.136802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.181 3.819 11 H 0.087 0.913 12 N -0.716 5.716 13 C 0.541 3.459 14 O -0.538 6.538 15 C -0.185 4.185 16 C -0.039 4.039 17 C -0.113 4.113 18 C -0.058 4.058 19 C -0.173 4.173 20 C 0.098 3.902 21 N -0.485 5.485 22 C 0.113 3.887 23 C -0.047 4.047 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.135 4.135 27 C -0.121 4.121 28 C -0.098 4.098 29 H 0.259 0.741 30 H 0.023 0.977 31 H 0.024 0.976 32 H 0.393 0.607 33 H 0.127 0.873 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 -19.096 0.564 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.078 3.922 11 H 0.105 0.895 12 N -0.366 5.366 13 C 0.329 3.671 14 O -0.416 6.416 15 C -0.205 4.205 16 C -0.060 4.060 17 C -0.116 4.116 18 C -0.084 4.084 19 C -0.193 4.193 20 C -0.058 4.058 21 N -0.193 5.193 22 C -0.045 4.045 23 C -0.048 4.048 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.153 4.153 27 C -0.139 4.139 28 C -0.116 4.116 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.227 0.773 33 H 0.145 0.855 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.173 0.827 38 H 0.178 0.822 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.177 -18.972 0.510 18.980 hybrid contribution 0.411 1.346 0.271 1.433 sum 0.589 -17.626 0.780 17.653 Atomic orbital electron populations 1.69972 1.06028 1.26450 1.50871 1.24952 0.94791 0.99138 0.95309 0.86558 0.80196 0.83924 0.77505 1.19651 1.21099 1.21042 1.21080 0.93018 0.90367 1.50439 0.92351 1.19429 0.93557 0.90419 0.97906 1.20346 0.95496 0.83349 0.93041 0.89538 1.46186 1.58797 1.24164 1.07469 1.18140 0.80679 0.84590 0.83734 1.90830 1.53497 1.59995 1.37297 1.23104 1.01446 0.97597 0.98382 1.22177 0.93060 0.91984 0.98746 1.20100 1.00074 0.96831 0.94552 1.21865 0.94531 0.94681 0.97288 1.22111 0.99839 0.96953 1.00381 1.22894 0.96460 0.98878 0.87617 1.67652 1.12215 1.11717 1.27669 1.23170 0.92343 0.90389 0.98614 1.19892 0.93714 0.96100 0.95078 1.20838 0.99310 1.01200 0.92483 1.20980 0.95442 1.00508 0.96984 1.20985 0.95585 1.00594 0.98130 1.21044 0.99815 1.00164 0.92862 1.20977 0.94573 0.98404 0.97682 0.93097 0.95841 0.95731 0.77295 0.85506 0.84234 0.84182 0.84469 0.82680 0.82222 0.86667 0.86688 0.86862 0.86608 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.51 -14.19 8.53 -34.44 -0.29 -14.48 16 8 H 0.06 1.57 6.79 -52.49 -0.36 1.21 16 9 C 0.02 0.63 4.68 -27.88 -0.13 0.50 16 10 C 0.18 3.70 2.19 -69.08 -0.15 3.55 16 11 H 0.09 1.92 7.49 -51.93 -0.39 1.53 16 12 N -0.72 -12.07 5.04 -56.33 -0.28 -12.35 16 13 C 0.54 9.41 7.60 -12.97 -0.10 9.31 16 14 O -0.54 -11.64 15.93 5.20 0.08 -11.56 16 15 C -0.18 -2.34 9.42 -37.51 -0.35 -2.70 16 16 C -0.04 -0.47 9.48 -37.16 -0.35 -0.82 16 17 C -0.11 -1.18 5.88 -104.91 -0.62 -1.80 16 18 C -0.06 -0.51 9.95 -38.80 -0.39 -0.89 16 19 C -0.17 -1.29 10.09 -39.51 -0.40 -1.69 16 20 C 0.10 0.83 11.17 -17.45 -0.19 0.64 16 21 N -0.48 -5.25 10.34 -12.83 -0.13 -5.39 16 22 C 0.11 1.17 10.59 -17.04 -0.18 0.99 16 23 C -0.05 -0.87 4.50 -104.62 -0.47 -1.34 16 24 C -0.12 -1.95 9.02 -39.58 -0.36 -2.31 16 25 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 26 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 27 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 28 C -0.10 -1.74 8.83 -39.58 -0.35 -2.09 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.02 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.39 5.29 6.85 -40.82 -0.28 5.01 16 33 H 0.13 1.19 6.10 -52.49 -0.32 0.87 16 34 H 0.14 1.76 7.52 -52.48 -0.39 1.36 16 35 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.16 1.37 6.19 -52.49 -0.32 1.05 16 39 H 0.12 1.67 6.95 -52.49 -0.36 1.31 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.12 2.12 7.85 -52.48 -0.41 1.71 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -34.83 371.60 -10.00 -44.83 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.36 Total: 6.47 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -5.62 Total: -18.27 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.32 Total: -43.95 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.83 -10.00 -44.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153143607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.073 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds