Wall clock time and date at job start Tue Mar 31 2020 13:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48496 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46824 * 299.99952 * 3 2 1 6 6 H 1.48498 * 109.47027 * 59.99313 * 3 2 1 7 7 C 1.37879 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99727 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46905 * 174.85569 * 9 7 2 11 11 H 1.09003 * 109.47174 * 54.20386 * 10 9 7 12 12 N 1.46498 * 109.47041 * 174.20254 * 10 9 7 13 13 C 1.34778 * 120.00126 * 278.67451 * 12 10 9 14 14 O 1.21689 * 119.99688 * 355.04438 * 13 12 10 15 15 C 1.46421 * 119.99776 * 175.03950 * 13 12 10 16 16 C 1.34808 * 119.99611 * 179.72556 * 15 13 12 17 17 C 1.47209 * 119.99967 * 180.27591 * 16 15 13 18 18 C 1.40267 * 120.58538 * 180.02562 * 17 16 15 19 19 C 1.38293 * 118.26706 * 179.97438 * 18 17 16 20 20 C 1.38388 * 119.33332 * 359.97438 * 19 18 17 21 21 N 1.31940 * 121.13858 * 0.02562 * 20 19 18 22 22 C 1.31654 * 121.90648 * 359.68207 * 21 20 19 23 23 C 1.50705 * 109.47027 * 294.20154 * 10 9 7 24 24 C 1.38231 * 119.99817 * 279.72645 * 23 10 9 25 25 C 1.38237 * 119.99419 * 179.79195 * 24 23 10 26 26 C 1.38240 * 120.00379 * 0.43619 * 25 24 23 27 27 C 1.38235 * 119.99766 * 359.81961 * 26 25 24 28 28 C 1.38232 * 119.99788 * 100.00240 * 23 10 9 29 29 H 0.96992 * 119.99918 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47080 * 54.86133 * 9 7 2 31 31 H 1.09001 * 109.47285 * 294.85439 * 9 7 2 32 32 H 0.97004 * 120.00007 * 98.67350 * 12 10 9 33 33 H 1.07994 * 120.00450 * 0.02562 * 15 13 12 34 34 H 1.08003 * 120.00467 * 0.27790 * 16 15 13 35 35 H 1.08006 * 120.86712 * 359.95631 * 18 17 16 36 36 H 1.07998 * 120.32794 * 180.02562 * 19 18 17 37 37 H 1.08004 * 119.43185 * 180.02562 * 20 19 18 38 38 H 1.07995 * 119.74365 * 180.29232 * 22 21 20 39 39 H 1.07994 * 120.00650 * 359.97438 * 24 23 10 40 40 H 1.08001 * 119.99976 * 180.27906 * 25 24 23 41 41 H 1.07997 * 119.99911 * 179.83212 * 26 25 24 42 42 H 1.07994 * 119.99921 * 179.97438 * 27 26 25 43 43 H 1.08007 * 120.00406 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2404 -3.6592 -0.1282 11 1 2.9959 -3.5809 0.6536 12 7 1.5240 -4.9295 0.0106 13 6 1.2205 -5.4017 1.2359 14 8 1.6192 -4.8204 2.2279 15 6 0.4110 -6.6140 1.3734 16 6 0.1121 -7.0894 2.5990 17 6 -0.6967 -8.3116 2.7373 18 6 -1.0154 -8.8167 4.0064 19 6 -1.7784 -9.9678 4.0805 20 6 -2.1996 -10.5784 2.9122 21 7 -1.8852 -10.0815 1.7311 22 6 -1.1663 -8.9857 1.6061 23 6 2.9071 -3.6033 -1.4786 24 6 2.2516 -4.0909 -2.5936 25 6 2.8615 -4.0357 -3.8330 26 6 4.1305 -3.5012 -3.9558 27 6 4.7880 -3.0184 -2.8397 28 6 4.1763 -3.0697 -1.6011 29 1 -0.4849 0.8400 -0.0004 30 1 0.5575 -2.5183 -0.8401 31 1 0.6949 -2.5977 0.9328 32 1 1.2682 -5.4309 -0.7795 33 1 0.0575 -7.1301 0.4931 34 1 0.4658 -6.5736 3.4795 35 1 -0.6736 -8.3199 4.9024 36 1 -2.0436 -10.3854 5.0406 37 1 -2.7959 -11.4771 2.9683 38 1 -0.9333 -8.6071 0.6219 39 1 1.2620 -4.5123 -2.4972 40 1 2.3477 -4.4126 -4.7050 41 1 4.6079 -3.4605 -4.9236 42 1 5.7795 -2.6012 -2.9356 43 1 4.6901 -2.6924 -0.7292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153143607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:03 Heat of formation + Delta-G solvation = 13.922298 kcal Electronic energy + Delta-G solvation = -25152.551149 eV Core-core repulsion = 21547.662102 eV Total energy + Delta-G solvation = -3604.889047 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25049 -40.90303 -39.80931 -36.78957 -35.49994 -34.87390 -33.29204 -32.66991 -31.67334 -30.79316 -30.32255 -27.07052 -25.48830 -24.54911 -23.95452 -23.56611 -22.58965 -21.17999 -20.67802 -18.88099 -18.65775 -18.06213 -17.41086 -17.14912 -16.65689 -16.53442 -16.12078 -15.84082 -15.76130 -15.37297 -14.99994 -14.93079 -14.67742 -14.53513 -14.23260 -14.14939 -14.01080 -13.84376 -13.16950 -13.13362 -12.96717 -12.71546 -12.62424 -12.57223 -12.00055 -11.87905 -11.82664 -11.63884 -11.39334 -10.97617 -10.63254 -10.58160 -10.45350 -10.07025 -9.70103 -9.49713 -9.39942 -8.20582 -6.29126 -0.60188 0.28373 0.55616 0.61348 0.92103 1.36602 1.37508 1.50174 2.20439 2.35740 2.43249 2.91995 3.00975 3.14234 3.41747 3.62572 3.82061 3.86018 3.92082 4.04363 4.05747 4.19122 4.22467 4.25208 4.35770 4.50724 4.55944 4.73371 4.80446 4.81577 4.83170 4.94686 5.09869 5.14772 5.22348 5.27050 5.30255 5.37917 5.47147 5.54155 5.66376 5.69817 5.71013 5.74641 5.90497 6.20156 6.23206 6.62786 6.83014 6.95644 7.29850 7.38193 8.92134 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012575 B = 0.002906 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.092573 B = 9633.376393 C =11150.136802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.039 3.961 10 C 0.197 3.803 11 H 0.059 0.941 12 N -0.707 5.707 13 C 0.535 3.465 14 O -0.592 6.592 15 C -0.201 4.201 16 C -0.017 4.017 17 C -0.134 4.134 18 C -0.061 4.061 19 C -0.167 4.167 20 C 0.096 3.904 21 N -0.511 5.511 22 C 0.106 3.894 23 C -0.074 4.074 24 C -0.130 4.130 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.122 4.122 29 H 0.262 0.738 30 H 0.003 0.997 31 H -0.022 1.022 32 H 0.411 0.589 33 H 0.163 0.837 34 H 0.127 0.873 35 H 0.156 0.844 36 H 0.171 0.829 37 H 0.184 0.816 38 H 0.171 0.829 39 H 0.127 0.873 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.141 0.859 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -20.663 -0.943 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C 0.001 3.999 10 C 0.093 3.907 11 H 0.077 0.923 12 N -0.358 5.358 13 C 0.325 3.675 14 O -0.475 6.475 15 C -0.221 4.221 16 C -0.037 4.037 17 C -0.136 4.136 18 C -0.086 4.086 19 C -0.187 4.187 20 C -0.060 4.060 21 N -0.220 5.220 22 C -0.051 4.051 23 C -0.074 4.074 24 C -0.148 4.148 25 C -0.137 4.137 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.141 4.141 29 H 0.071 0.929 30 H 0.021 0.979 31 H -0.003 1.003 32 H 0.248 0.752 33 H 0.180 0.820 34 H 0.145 0.855 35 H 0.174 0.826 36 H 0.189 0.811 37 H 0.201 0.799 38 H 0.188 0.812 39 H 0.144 0.856 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.159 0.841 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.500 -20.574 -1.031 20.606 hybrid contribution 0.250 1.688 0.806 1.887 sum 0.749 -18.887 -0.224 18.903 Atomic orbital electron populations 1.70107 1.07707 1.27482 1.52049 1.25878 0.95685 1.03052 0.94946 0.85486 0.79330 0.79168 0.77682 1.18406 1.20181 1.20753 1.21448 0.93404 0.91438 1.49714 0.91970 1.19169 0.93790 0.92464 0.94452 1.19738 0.93680 0.83108 0.94181 0.92284 1.46003 1.58285 1.23076 1.08402 1.18939 0.80157 0.85480 0.82919 1.90790 1.55795 1.62020 1.38872 1.22961 1.02494 0.96442 1.00227 1.22235 0.91566 0.91948 0.97981 1.20027 1.01251 0.96616 0.95710 1.22204 0.94139 0.95100 0.97203 1.22468 0.98537 0.96015 1.01630 1.23496 0.95742 0.99436 0.87293 1.67704 1.13064 1.12128 1.29079 1.23368 0.92168 0.90416 0.99122 1.19760 0.94641 0.98690 0.94324 1.21060 0.99881 1.01152 0.92696 1.21403 0.95674 0.99469 0.97114 1.21462 0.95310 0.98628 0.99230 1.21366 1.00904 0.99766 0.92093 1.21081 0.94801 0.99457 0.98761 0.92940 0.97887 1.00332 0.75163 0.82010 0.85523 0.82617 0.81127 0.79859 0.81183 0.85560 0.83297 0.83196 0.84088 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.21 13.29 21.45 0.28 -57.93 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.96 45.69 29.54 68.60 2.03 47.71 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.52 -30.30 8.53 25.60 0.22 -30.08 16 8 H 0.06 3.48 6.79 -2.91 -0.02 3.46 16 9 C 0.04 2.15 4.68 29.85 0.14 2.29 16 10 C 0.20 8.64 2.19 44.25 0.10 8.74 16 11 H 0.06 2.87 7.49 -2.39 -0.02 2.85 16 12 N -0.71 -25.26 5.04 -450.33 -2.27 -27.53 16 13 C 0.53 19.88 7.60 86.37 0.66 20.54 16 14 O -0.59 -27.87 15.93 -4.31 -0.07 -27.94 16 15 C -0.20 -5.26 9.42 23.61 0.22 -5.04 16 16 C -0.02 -0.41 9.48 23.84 0.23 -0.18 16 17 C -0.13 -2.69 5.88 -20.05 -0.12 -2.81 16 18 C -0.06 -0.96 9.95 22.78 0.23 -0.74 16 19 C -0.17 -2.03 10.09 22.32 0.23 -1.80 16 20 C 0.10 1.39 11.17 84.71 0.95 2.33 16 21 N -0.51 -10.26 10.34 -194.52 -2.01 -12.27 16 22 C 0.11 2.10 10.59 85.10 0.90 3.00 16 23 C -0.07 -2.79 4.50 -19.87 -0.09 -2.88 16 24 C -0.13 -4.13 9.02 22.27 0.20 -3.93 16 25 C -0.12 -3.12 10.05 22.27 0.22 -2.89 16 26 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 27 C -0.12 -3.57 10.05 22.27 0.22 -3.34 16 28 C -0.12 -4.41 8.83 22.27 0.20 -4.21 16 29 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 31 H -0.02 -1.36 8.08 -2.39 -0.02 -1.38 16 32 H 0.41 11.37 6.85 -92.71 -0.63 10.73 16 33 H 0.16 2.95 6.10 -2.91 -0.02 2.94 16 34 H 0.13 3.40 7.52 -2.91 -0.02 3.38 16 35 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.18 1.45 8.06 -2.91 -0.02 1.42 16 38 H 0.17 2.74 6.19 -2.91 -0.02 2.73 16 39 H 0.13 3.59 6.95 -2.91 -0.02 3.57 16 40 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 43 H 0.11 4.05 7.85 -2.91 -0.02 4.02 16 Total: -1.00 -80.62 371.60 3.54 -77.08 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.40 Total: 24.30 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 5.18 Total: -23.43 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -4.00 Total: -97.73 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.07 Total: -27.94 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -80.62 3.54 -77.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153143607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.006 kcal (2) G-P(sol) polarization free energy of solvation -80.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds