Wall clock time and date at job start Tue Mar 31 2020 13:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00312 * 2 1 4 4 H 1.48500 * 109.47321 * 270.00423 * 3 2 1 5 5 H 1.48496 * 109.47027 * 30.00512 * 3 2 1 6 6 H 1.48499 * 109.47101 * 150.00572 * 3 2 1 7 7 C 1.37875 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47217 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.46790 * 54.99955 * 10 9 7 12 12 N 1.46496 * 109.47205 * 295.00021 * 10 9 7 13 13 C 1.34777 * 120.00345 * 155.00270 * 12 10 9 14 14 O 1.21696 * 119.99522 * 359.71664 * 13 12 10 15 15 C 1.46426 * 120.00383 * 180.02562 * 13 12 10 16 16 C 1.34800 * 119.99998 * 179.72520 * 15 13 12 17 17 C 1.47216 * 119.99968 * 179.97438 * 16 15 13 18 18 C 1.40264 * 120.58760 * 179.97438 * 17 16 15 19 19 C 1.38282 * 118.26736 * 179.97438 * 18 17 16 20 20 C 1.38394 * 119.33684 * 0.02562 * 19 18 17 21 21 N 1.31945 * 121.13406 * 0.02562 * 20 19 18 22 22 C 1.31660 * 121.90399 * 359.67897 * 21 20 19 23 23 C 1.50696 * 109.46986 * 174.99635 * 10 9 7 24 24 C 1.38239 * 120.00085 * 79.73118 * 23 10 9 25 25 C 1.38231 * 119.99949 * 179.81082 * 24 23 10 26 26 C 1.38228 * 120.00359 * 0.38960 * 25 24 23 27 27 C 1.38241 * 119.99939 * 359.86152 * 26 25 24 28 28 C 1.38234 * 119.99881 * 359.95220 * 27 26 25 29 29 H 0.97007 * 119.99635 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47470 * 59.99545 * 9 7 2 31 31 H 1.08997 * 109.47012 * 300.00016 * 9 7 2 32 32 H 0.97004 * 120.00003 * 334.99491 * 12 10 9 33 33 H 1.08000 * 119.99371 * 359.71934 * 15 13 12 34 34 H 1.08000 * 120.00631 * 359.97438 * 16 15 13 35 35 H 1.08005 * 120.86651 * 359.95518 * 18 17 16 36 36 H 1.08002 * 120.33502 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.43492 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.73610 * 180.31403 * 22 21 20 39 39 H 1.08000 * 119.99752 * 359.97438 * 24 23 10 40 40 H 1.08006 * 119.99809 * 180.23213 * 25 24 23 41 41 H 1.07998 * 120.00684 * 179.83452 * 26 25 24 42 42 H 1.08003 * 119.99917 * 179.97438 * 27 26 25 43 43 H 1.08001 * 119.99913 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 1 2.9298 -3.5556 0.8396 12 7 3.0050 -3.6535 -1.2542 13 6 4.2297 -4.2142 -1.3032 14 8 4.7062 -4.7232 -0.3058 15 6 4.9896 -4.2051 -2.5548 16 6 6.2167 -4.7610 -2.6024 17 6 6.9804 -4.7523 -3.8609 18 6 8.2585 -5.3268 -3.9241 19 6 8.9330 -5.2923 -5.1307 20 6 8.3323 -4.6977 -6.2266 21 7 7.1289 -4.1638 -6.1388 22 6 6.4428 -4.1755 -5.0152 23 6 1.4956 -4.9637 0.1221 24 6 0.8883 -5.5200 -0.9881 25 6 0.2042 -6.7159 -0.8753 26 6 0.1206 -7.3514 0.3494 27 6 0.7235 -6.7925 1.4608 28 6 1.4109 -5.5986 1.3471 29 1 -0.4850 0.8401 0.0004 30 1 0.6238 -2.5567 -0.8902 31 1 0.6246 -2.5571 0.8897 32 1 2.6269 -3.2443 -2.0482 33 1 4.5668 -3.7530 -3.4398 34 1 6.6396 -5.2128 -1.7172 35 1 8.7043 -5.7839 -3.0530 36 1 9.9188 -5.7250 -5.2172 37 1 8.8575 -4.6702 -7.1698 38 1 5.4582 -3.7326 -4.9840 39 1 0.9505 -5.0216 -1.9443 40 1 -0.2671 -7.1524 -1.7435 41 1 -0.4161 -8.2844 0.4382 42 1 0.6578 -7.2889 2.4177 43 1 1.8815 -5.1617 2.2155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153143717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:06 Heat of formation + Delta-G solvation = 12.837692 kcal Electronic energy + Delta-G solvation = -25279.045425 eV Core-core repulsion = 21674.109347 eV Total energy + Delta-G solvation = -3604.936079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22036 -40.88364 -39.71184 -36.88263 -35.48243 -34.72703 -33.28611 -32.61179 -31.70518 -30.81288 -30.42556 -26.98326 -25.55240 -24.54166 -23.80368 -23.41820 -22.71165 -21.26958 -20.55839 -18.78229 -18.56240 -17.94057 -17.67370 -17.21632 -16.74102 -16.37374 -16.26340 -16.02386 -15.49901 -15.41250 -14.94616 -14.92251 -14.65690 -14.44156 -14.18893 -14.09053 -14.00342 -13.67919 -13.44492 -13.12711 -12.94160 -12.70869 -12.60732 -12.47770 -12.15504 -11.88755 -11.82392 -11.59958 -11.34002 -10.99374 -10.62668 -10.58310 -10.44386 -10.02308 -9.75838 -9.53367 -9.41759 -8.20970 -6.31168 -0.58406 0.28753 0.50933 0.55841 0.94561 1.38891 1.40582 1.50875 2.32278 2.38780 2.39642 2.92484 2.97521 3.13334 3.43118 3.65648 3.83236 3.92521 3.98733 4.03361 4.05725 4.20600 4.22254 4.24635 4.32314 4.46668 4.56932 4.65187 4.75556 4.78785 4.81683 4.96383 5.10320 5.12467 5.19936 5.26421 5.30277 5.39181 5.42995 5.60635 5.61077 5.64087 5.71793 5.77366 5.91043 6.15570 6.20147 6.70990 6.81544 6.96469 7.33336 7.38137 8.89765 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007967 B = 0.003778 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.872246 B = 7410.010251 C =10102.366232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.038 3.962 10 C 0.200 3.800 11 H 0.058 0.942 12 N -0.690 5.690 13 C 0.539 3.461 14 O -0.593 6.593 15 C -0.202 4.202 16 C -0.016 4.016 17 C -0.132 4.132 18 C -0.059 4.059 19 C -0.167 4.167 20 C 0.095 3.905 21 N -0.513 5.513 22 C 0.103 3.897 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.134 4.134 29 H 0.264 0.736 30 H 0.013 0.987 31 H 0.003 0.997 32 H 0.410 0.590 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.159 0.841 36 H 0.172 0.828 37 H 0.183 0.817 38 H 0.166 0.834 39 H 0.121 0.879 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.144 0.856 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.086 -14.588 -9.934 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.001 3.999 10 C 0.094 3.906 11 H 0.076 0.924 12 N -0.338 5.338 13 C 0.329 3.671 14 O -0.477 6.477 15 C -0.223 4.223 16 C -0.036 4.036 17 C -0.135 4.135 18 C -0.085 4.085 19 C -0.186 4.186 20 C -0.061 4.061 21 N -0.222 5.222 22 C -0.054 4.054 23 C -0.099 4.099 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.022 0.978 32 H 0.246 0.754 33 H 0.171 0.829 34 H 0.149 0.851 35 H 0.177 0.823 36 H 0.190 0.810 37 H 0.200 0.800 38 H 0.183 0.817 39 H 0.139 0.861 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.162 0.838 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.868 -14.406 -9.982 21.167 hybrid contribution 0.197 1.154 0.822 1.430 sum 12.065 -13.252 -9.161 20.127 Atomic orbital electron populations 1.70071 1.07450 1.27744 1.51274 1.25766 0.95564 1.02624 0.94746 0.85589 0.78479 0.79253 0.78574 1.19449 1.20881 1.19752 1.21402 0.92995 0.91620 1.50810 0.92864 1.19127 0.93262 0.91080 0.96433 1.19730 0.92212 0.92043 0.86582 0.92389 1.45781 1.17011 1.57309 1.13693 1.18800 0.81410 0.77617 0.89285 1.90738 1.70379 1.48267 1.38291 1.22976 0.96763 1.05348 0.97176 1.22203 0.92608 0.93008 0.95821 1.20037 0.96597 1.02576 0.94250 1.22199 0.92286 0.94326 0.99674 1.22475 1.02771 1.00640 0.92718 1.23494 0.90539 0.91818 1.00280 1.67696 1.09222 1.17691 1.27591 1.23343 0.99891 0.94752 0.87391 1.20441 0.98391 0.96274 0.94806 1.21080 0.98065 0.96723 0.98102 1.21442 0.98914 0.94945 0.98970 1.21474 0.99900 1.00947 0.92383 1.21393 0.97499 0.95119 1.00159 1.21183 1.00474 0.96626 0.96937 0.92698 0.96884 0.97831 0.75433 0.82885 0.85053 0.82297 0.81012 0.79964 0.81674 0.86087 0.83590 0.83078 0.83811 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 2 C 0.01 0.65 5.46 84.65 0.46 1.11 16 3 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.53 -28.96 8.84 25.60 0.23 -28.73 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 9 C 0.04 1.94 4.49 29.85 0.13 2.07 16 10 C 0.20 8.60 2.12 44.24 0.09 8.69 16 11 H 0.06 2.80 7.43 -2.38 -0.02 2.78 16 12 N -0.69 -25.70 4.04 -450.35 -1.82 -27.52 16 13 C 0.54 19.49 7.70 86.37 0.67 20.16 16 14 O -0.59 -25.68 15.89 -4.34 -0.07 -25.75 16 15 C -0.20 -5.41 9.42 23.61 0.22 -5.18 16 16 C -0.02 -0.38 9.48 23.84 0.23 -0.15 16 17 C -0.13 -2.68 5.88 -20.05 -0.12 -2.79 16 18 C -0.06 -0.91 9.95 22.77 0.23 -0.68 16 19 C -0.17 -2.01 10.09 22.32 0.23 -1.78 16 20 C 0.09 1.42 11.17 84.71 0.95 2.37 16 21 N -0.51 -10.96 10.34 -194.51 -2.01 -12.97 16 22 C 0.10 2.18 10.59 85.10 0.90 3.08 16 23 C -0.10 -3.79 4.91 -19.87 -0.10 -3.89 16 24 C -0.12 -4.09 9.32 22.27 0.21 -3.88 16 25 C -0.12 -3.46 10.05 22.27 0.22 -3.24 16 26 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 27 C -0.12 -3.59 10.05 22.27 0.22 -3.36 16 28 C -0.13 -4.82 9.67 22.27 0.22 -4.61 16 29 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 30 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.41 13.75 8.58 -92.71 -0.80 12.95 16 33 H 0.15 3.21 6.10 -2.91 -0.02 3.19 16 34 H 0.13 3.28 7.52 -2.91 -0.02 3.26 16 35 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 36 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 37 H 0.18 1.57 8.06 -2.91 -0.02 1.54 16 38 H 0.17 3.09 6.19 -2.91 -0.02 3.07 16 39 H 0.12 3.82 7.73 -2.91 -0.02 3.80 16 40 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 41 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 42 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 43 H 0.11 4.05 8.04 -2.91 -0.02 4.03 16 Total: -1.00 -73.21 375.93 3.85 -69.36 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.23 Total: 29.02 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 5.21 Total: -23.93 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -3.55 Total: -94.40 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.07 Total: -25.75 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -73.21 3.85 -69.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153143717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.201 kcal (2) G-P(sol) polarization free energy of solvation -73.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds