Wall clock time and date at job start Tue Mar 31 2020 13:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99982 * 2 1 4 4 H 1.48500 * 109.46838 * 239.99848 * 3 2 1 5 5 H 1.48505 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47263 * 119.99656 * 3 2 1 7 7 C 1.37875 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47180 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47351 * 305.00093 * 10 9 7 12 12 N 1.46502 * 109.47267 * 65.00291 * 10 9 7 13 13 C 1.34767 * 120.00187 * 205.00028 * 12 10 9 14 14 O 1.21664 * 120.00187 * 359.97438 * 13 12 10 15 15 C 1.46658 * 120.00357 * 179.97438 * 13 12 10 16 16 C 1.34628 * 120.00194 * 180.02562 * 15 13 12 17 17 C 1.47410 * 119.99965 * 180.02562 * 16 15 13 18 18 C 1.40128 * 120.94846 * 179.97438 * 17 16 15 19 19 C 1.38001 * 118.96584 * 180.02562 * 18 17 16 20 20 N 1.31884 * 120.92470 * 359.97438 * 19 18 17 21 21 C 1.31889 * 122.11537 * 0.02562 * 20 19 18 22 22 C 1.37999 * 120.92085 * 359.97438 * 21 20 19 23 23 C 1.50697 * 109.47127 * 185.00363 * 10 9 7 24 24 C 1.38239 * 120.00003 * 279.72462 * 23 10 9 25 25 C 1.38233 * 119.99916 * 179.80670 * 24 23 10 26 26 C 1.38235 * 120.00245 * 0.40759 * 25 24 23 27 27 C 1.38238 * 120.00046 * 359.84797 * 26 25 24 28 28 C 1.38237 * 119.99769 * 359.96132 * 27 26 25 29 29 H 0.96998 * 120.00357 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47115 * 60.00440 * 9 7 2 31 31 H 1.09003 * 109.47652 * 300.00369 * 9 7 2 32 32 H 0.97001 * 119.99540 * 25.00124 * 12 10 9 33 33 H 1.08007 * 119.99275 * 0.02562 * 15 13 12 34 34 H 1.07997 * 120.00508 * 0.02562 * 16 15 13 35 35 H 1.07994 * 120.52092 * 0.02562 * 18 17 16 36 36 H 1.07998 * 119.54170 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.53807 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.51205 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.00098 * 0.02562 * 24 23 10 40 40 H 1.08001 * 120.00339 * 180.23019 * 25 24 23 41 41 H 1.07998 * 120.00297 * 179.83412 * 26 25 24 42 42 H 1.07997 * 120.00490 * 179.97438 * 27 26 25 43 43 H 1.08002 * 120.00009 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 1 2.9295 -3.5559 -0.8391 12 7 3.0063 -3.6528 1.2546 13 6 4.2310 -4.2133 1.3029 14 8 4.7044 -4.7275 0.3070 15 6 4.9930 -4.2037 2.5559 16 6 6.2166 -4.7632 2.6040 17 6 6.9823 -4.7539 3.8636 18 6 8.2572 -5.3309 3.9362 19 6 8.9376 -5.2996 5.1364 20 7 8.4042 -4.7371 6.2034 21 6 7.2078 -4.1826 6.1797 22 6 6.4560 -4.1677 5.0226 23 6 1.4960 -4.9637 -0.1200 24 6 0.8991 -5.5253 0.9933 25 6 0.2084 -6.7173 0.8798 26 6 0.1216 -7.3520 -0.3451 27 6 0.7229 -6.7932 -1.4573 28 6 1.4103 -5.5992 -1.3447 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5575 -0.8881 31 1 0.6247 -2.5563 0.8919 32 1 2.6287 -3.2432 2.0487 33 1 4.5725 -3.7476 3.4401 34 1 6.6372 -5.2188 1.7198 35 1 8.7004 -5.7929 3.0665 36 1 9.9206 -5.7419 5.2029 37 1 6.8110 -3.7339 7.0783 38 1 5.4772 -3.7115 5.0105 39 1 0.9695 -5.0310 1.9509 40 1 -0.2611 -7.1542 1.7488 41 1 -0.4158 -8.2847 -0.4332 42 1 0.6555 -7.2892 -2.4143 43 1 1.8798 -5.1623 -2.2137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153382078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:16 Heat of formation + Delta-G solvation = 31.375173 kcal Electronic energy + Delta-G solvation = -25268.820772 eV Core-core repulsion = 21664.688539 eV Total energy + Delta-G solvation = -3604.132233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32384 -39.66054 -38.46719 -35.45842 -34.71656 -32.78546 -31.63792 -31.34665 -30.55348 -30.32079 -28.81673 -25.53878 -24.47241 -23.66023 -22.34476 -22.03407 -21.65079 -19.86678 -19.42162 -17.67675 -17.01514 -16.51449 -16.19671 -16.04807 -15.83077 -15.37533 -14.92716 -14.57523 -14.27650 -14.22220 -14.05458 -13.87146 -13.60255 -13.23985 -13.04976 -12.77839 -12.57146 -12.35240 -12.13715 -11.62423 -11.52884 -11.17138 -11.14991 -10.95661 -10.75420 -10.66123 -10.50124 -9.82204 -9.76909 -9.59646 -9.43358 -9.34180 -8.92883 -8.57607 -8.49355 -8.45101 -8.21664 -6.12642 -4.16595 0.31602 0.88877 1.74855 1.77560 1.95026 3.25930 3.31465 3.34205 3.50807 3.61857 3.75162 4.19087 4.20379 4.36495 4.44662 4.51107 4.76591 4.85368 5.01573 5.21237 5.23853 5.24455 5.27632 5.35249 5.37977 5.51435 5.52274 5.66344 5.75295 5.87654 5.90930 6.07399 6.23126 6.32321 6.33064 6.41270 6.42133 6.53843 6.81690 6.82324 6.84031 7.07283 7.37504 7.44873 7.57354 7.71480 7.83615 8.04791 8.21629 8.66005 8.89098 9.48763 10.97785 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007970 B = 0.003756 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.470462 B = 7452.693153 C =10147.553350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.183 3.817 11 H 0.088 0.912 12 N -0.691 5.691 13 C 0.538 3.462 14 O -0.550 6.550 15 C -0.167 4.167 16 C -0.056 4.056 17 C -0.016 4.016 18 C -0.158 4.158 19 C 0.097 3.903 20 N -0.489 5.489 21 C 0.100 3.900 22 C -0.162 4.162 23 C -0.071 4.071 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.263 0.737 30 H 0.035 0.965 31 H 0.025 0.975 32 H 0.402 0.598 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.141 0.859 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.540 -12.200 8.050 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.079 3.921 11 H 0.106 0.894 12 N -0.339 5.339 13 C 0.326 3.674 14 O -0.430 6.430 15 C -0.189 4.189 16 C -0.076 4.076 17 C -0.024 4.024 18 C -0.177 4.177 19 C -0.059 4.059 20 N -0.198 5.198 21 C -0.057 4.057 22 C -0.182 4.182 23 C -0.073 4.073 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.127 4.127 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.237 0.763 33 H 0.148 0.852 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.159 0.841 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.160 -12.407 8.114 17.426 hybrid contribution -0.379 1.232 -0.424 1.357 sum 8.781 -11.175 7.690 16.159 Atomic orbital electron populations 1.69942 1.06026 1.26987 1.50059 1.24980 0.94790 0.99219 0.95050 0.86657 0.79577 0.83050 0.78737 1.20187 1.21263 1.20241 1.21097 0.93050 0.90400 1.51568 0.92432 1.19388 0.93187 0.90066 0.98650 1.20280 0.93435 0.92054 0.86306 0.89403 1.45895 1.16594 1.56892 1.14477 1.18270 0.81917 0.78954 0.88302 1.90771 1.69739 1.46067 1.36469 1.23238 0.96071 1.01313 0.98283 1.22225 0.93540 0.96184 0.95605 1.19461 0.93989 0.95442 0.93472 1.22391 0.94762 1.00602 0.99980 1.22701 0.99657 0.95496 0.88060 1.67590 1.12463 1.08778 1.30969 1.22714 0.89942 0.95351 0.97651 1.22482 1.01864 1.00539 0.93319 1.20531 0.96900 0.96445 0.93381 1.20906 0.97652 0.95627 0.98455 1.21044 0.99856 0.96020 0.97381 1.21003 1.01025 1.00030 0.93226 1.21048 0.98531 0.96192 0.98304 1.21024 0.99117 0.95068 0.97445 0.92756 0.94695 0.95705 0.76283 0.85248 0.84211 0.84272 0.82589 0.82496 0.84140 0.86567 0.86717 0.86816 0.86575 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -13.60 8.84 -34.44 -0.30 -13.90 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.57 4.50 -27.88 -0.13 0.45 16 10 C 0.18 3.65 2.12 -69.08 -0.15 3.50 16 11 H 0.09 1.92 7.44 -51.93 -0.39 1.53 16 12 N -0.69 -12.00 4.02 -56.26 -0.23 -12.23 16 13 C 0.54 9.19 7.71 -12.87 -0.10 9.09 16 14 O -0.55 -11.21 15.90 5.22 0.08 -11.12 16 15 C -0.17 -2.17 9.44 -37.46 -0.35 -2.52 16 16 C -0.06 -0.67 9.50 -37.13 -0.35 -1.02 16 17 C -0.02 -0.17 5.90 -104.74 -0.62 -0.78 16 18 C -0.16 -1.46 9.90 -38.96 -0.39 -1.85 16 19 C 0.10 0.90 11.17 -17.62 -0.20 0.70 16 20 N -0.49 -5.32 10.34 -13.35 -0.14 -5.46 16 21 C 0.10 0.96 11.17 -17.61 -0.20 0.76 16 22 C -0.16 -1.57 9.49 -38.96 -0.37 -1.94 16 23 C -0.07 -1.30 4.91 -104.62 -0.51 -1.82 16 24 C -0.11 -1.78 9.33 -39.58 -0.37 -2.15 16 25 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 26 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 27 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 28 C -0.11 -1.86 9.67 -39.58 -0.38 -2.24 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.40 6.29 8.58 -40.82 -0.35 5.94 16 33 H 0.13 1.32 6.17 -52.48 -0.32 0.99 16 34 H 0.14 1.74 7.52 -52.49 -0.39 1.34 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.14 1.11 6.30 -52.49 -0.33 0.78 16 39 H 0.12 1.77 7.71 -52.49 -0.40 1.36 16 40 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.98 8.04 -52.49 -0.42 1.56 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -32.20 376.07 -10.14 -42.34 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.54 Total: 8.43 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -5.70 Total: -18.88 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.37 Total: -42.19 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.20 -10.14 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153382078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.719 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds