Wall clock time and date at job start Tue Mar 31 2020 13:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99982 * 2 1 4 4 H 1.48500 * 109.46838 * 239.99848 * 3 2 1 5 5 H 1.48505 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47263 * 119.99656 * 3 2 1 7 7 C 1.37875 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47180 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47351 * 305.00093 * 10 9 7 12 12 N 1.46502 * 109.47267 * 65.00291 * 10 9 7 13 13 C 1.34767 * 120.00187 * 205.00028 * 12 10 9 14 14 O 1.21664 * 120.00187 * 359.97438 * 13 12 10 15 15 C 1.46658 * 120.00357 * 179.97438 * 13 12 10 16 16 C 1.34628 * 120.00194 * 180.02562 * 15 13 12 17 17 C 1.47410 * 119.99965 * 180.02562 * 16 15 13 18 18 C 1.40128 * 120.94846 * 179.97438 * 17 16 15 19 19 C 1.38001 * 118.96584 * 180.02562 * 18 17 16 20 20 N 1.31884 * 120.92470 * 359.97438 * 19 18 17 21 21 C 1.31889 * 122.11537 * 0.02562 * 20 19 18 22 22 C 1.37999 * 120.92085 * 359.97438 * 21 20 19 23 23 C 1.50697 * 109.47127 * 185.00363 * 10 9 7 24 24 C 1.38239 * 120.00003 * 279.72462 * 23 10 9 25 25 C 1.38233 * 119.99916 * 179.80670 * 24 23 10 26 26 C 1.38235 * 120.00245 * 0.40759 * 25 24 23 27 27 C 1.38238 * 120.00046 * 359.84797 * 26 25 24 28 28 C 1.38237 * 119.99769 * 359.96132 * 27 26 25 29 29 H 0.96998 * 120.00357 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47115 * 60.00440 * 9 7 2 31 31 H 1.09003 * 109.47652 * 300.00369 * 9 7 2 32 32 H 0.97001 * 119.99540 * 25.00124 * 12 10 9 33 33 H 1.08007 * 119.99275 * 0.02562 * 15 13 12 34 34 H 1.07997 * 120.00508 * 0.02562 * 16 15 13 35 35 H 1.07994 * 120.52092 * 0.02562 * 18 17 16 36 36 H 1.07998 * 119.54170 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.53807 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.51205 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.00098 * 0.02562 * 24 23 10 40 40 H 1.08001 * 120.00339 * 180.23019 * 25 24 23 41 41 H 1.07998 * 120.00297 * 179.83412 * 26 25 24 42 42 H 1.07997 * 120.00490 * 179.97438 * 27 26 25 43 43 H 1.08002 * 120.00009 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 1 2.9295 -3.5559 -0.8391 12 7 3.0063 -3.6528 1.2546 13 6 4.2310 -4.2133 1.3029 14 8 4.7044 -4.7275 0.3070 15 6 4.9930 -4.2037 2.5559 16 6 6.2166 -4.7632 2.6040 17 6 6.9823 -4.7539 3.8636 18 6 8.2572 -5.3309 3.9362 19 6 8.9376 -5.2996 5.1364 20 7 8.4042 -4.7371 6.2034 21 6 7.2078 -4.1826 6.1797 22 6 6.4560 -4.1677 5.0226 23 6 1.4960 -4.9637 -0.1200 24 6 0.8991 -5.5253 0.9933 25 6 0.2084 -6.7173 0.8798 26 6 0.1216 -7.3520 -0.3451 27 6 0.7229 -6.7932 -1.4573 28 6 1.4103 -5.5992 -1.3447 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5575 -0.8881 31 1 0.6247 -2.5563 0.8919 32 1 2.6287 -3.2432 2.0487 33 1 4.5725 -3.7476 3.4401 34 1 6.6372 -5.2188 1.7198 35 1 8.7004 -5.7929 3.0665 36 1 9.9206 -5.7419 5.2029 37 1 6.8110 -3.7339 7.0783 38 1 5.4772 -3.7115 5.0105 39 1 0.9695 -5.0310 1.9509 40 1 -0.2611 -7.1542 1.7488 41 1 -0.4158 -8.2847 -0.4332 42 1 0.6555 -7.2892 -2.4143 43 1 1.8798 -5.1623 -2.2137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153382078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:15 Heat of formation + Delta-G solvation = 13.743077 kcal Electronic energy + Delta-G solvation = -25269.585357 eV Core-core repulsion = 21664.688539 eV Total energy + Delta-G solvation = -3604.896818 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.22010 -40.88364 -39.72972 -36.91038 -35.74646 -34.73461 -32.79686 -32.23352 -31.72494 -31.33345 -30.51982 -27.04745 -25.67424 -24.42204 -23.80504 -23.42611 -22.72309 -21.28504 -20.57842 -18.79695 -18.58043 -17.78937 -17.42644 -17.13163 -16.80237 -16.46871 -16.35448 -16.23409 -15.52087 -15.44887 -14.90609 -14.88898 -14.51145 -14.43847 -14.32748 -14.18098 -14.09941 -13.67002 -13.43285 -13.29567 -12.92845 -12.65664 -12.46464 -12.33094 -12.16984 -12.02648 -11.88065 -11.60159 -11.35277 -11.01872 -10.58298 -10.50375 -10.12500 -10.09383 -9.77167 -9.71653 -9.52428 -8.20823 -6.31299 -0.57990 0.19456 0.50485 0.55472 0.99573 1.39961 1.41712 1.49471 2.29524 2.35404 2.39573 2.93590 2.96835 3.13378 3.48167 3.59169 3.74563 3.95892 4.02456 4.03217 4.10366 4.18396 4.20913 4.25567 4.31987 4.45658 4.64541 4.67044 4.74990 4.78258 4.84150 4.89556 4.95216 5.12015 5.19489 5.25574 5.26987 5.42107 5.45127 5.59620 5.60647 5.63795 5.72364 5.77071 5.90042 6.15262 6.19771 6.68597 6.81288 7.00248 7.30714 7.37998 8.89671 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007970 B = 0.003756 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.470462 B = 7452.693153 C =10147.553350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.039 3.961 10 C 0.199 3.801 11 H 0.058 0.942 12 N -0.688 5.688 13 C 0.536 3.464 14 O -0.592 6.592 15 C -0.184 4.184 16 C -0.032 4.032 17 C -0.036 4.036 18 C -0.156 4.156 19 C 0.091 3.909 20 N -0.509 5.509 21 C 0.091 3.909 22 C -0.162 4.162 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.134 4.134 29 H 0.264 0.736 30 H 0.003 0.997 31 H 0.014 0.986 32 H 0.411 0.589 33 H 0.159 0.841 34 H 0.132 0.868 35 H 0.158 0.842 36 H 0.183 0.817 37 H 0.180 0.820 38 H 0.157 0.843 39 H 0.122 0.878 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.208 -13.277 9.735 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.001 3.999 10 C 0.094 3.906 11 H 0.076 0.924 12 N -0.336 5.336 13 C 0.326 3.674 14 O -0.475 6.475 15 C -0.205 4.205 16 C -0.052 4.052 17 C -0.044 4.044 18 C -0.175 4.175 19 C -0.065 4.065 20 N -0.219 5.219 21 C -0.065 4.065 22 C -0.181 4.181 23 C -0.099 4.099 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.153 4.153 29 H 0.073 0.927 30 H 0.021 0.979 31 H 0.032 0.968 32 H 0.247 0.753 33 H 0.176 0.824 34 H 0.149 0.851 35 H 0.176 0.824 36 H 0.200 0.800 37 H 0.197 0.803 38 H 0.175 0.825 39 H 0.140 0.860 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.832 -13.483 9.824 19.364 hybrid contribution -0.533 1.464 -0.943 1.821 sum 9.299 -12.020 8.881 17.602 Atomic orbital electron populations 1.70057 1.07468 1.27838 1.51166 1.25761 0.95543 1.02604 0.94716 0.85660 0.78388 0.78966 0.78984 1.20189 1.20857 1.18950 1.21376 0.93006 0.91606 1.50971 0.92811 1.19122 0.93246 0.91040 0.96456 1.19737 0.92206 0.92064 0.86566 0.92393 1.45774 1.16878 1.57212 1.13768 1.18872 0.81482 0.77747 0.89276 1.90741 1.70470 1.47889 1.38356 1.23088 0.96361 1.03814 0.97222 1.22278 0.92948 0.94011 0.96001 1.19486 0.94717 0.97087 0.93094 1.22653 0.94228 0.99840 1.00804 1.23151 1.00647 0.95121 0.87589 1.67634 1.13156 1.09266 1.31823 1.23124 0.89660 0.95165 0.98510 1.22703 1.02526 0.99933 0.92948 1.20438 0.98473 0.96230 0.94784 1.21083 0.98076 0.96701 0.98074 1.21448 0.98833 0.95022 0.98953 1.21476 0.99913 1.00927 0.92414 1.21390 0.97517 0.95145 1.00150 1.21184 1.00472 0.96606 0.96993 0.92682 0.97884 0.96809 0.75325 0.82360 0.85066 0.82445 0.80049 0.80258 0.82542 0.85956 0.83551 0.83116 0.83872 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.56 13.29 21.45 0.28 -53.27 16 2 C 0.01 0.69 5.46 84.65 0.46 1.15 16 3 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.53 -28.54 8.84 25.60 0.23 -28.32 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.04 1.92 4.50 29.85 0.13 2.06 16 10 C 0.20 8.41 2.12 44.24 0.09 8.51 16 11 H 0.06 2.75 7.44 -2.39 -0.02 2.73 16 12 N -0.69 -24.76 4.02 -450.13 -1.81 -26.57 16 13 C 0.54 18.79 7.71 86.44 0.67 19.45 16 14 O -0.59 -25.12 15.90 -4.24 -0.07 -25.19 16 15 C -0.18 -4.64 9.44 23.64 0.22 -4.42 16 16 C -0.03 -0.75 9.50 23.86 0.23 -0.52 16 17 C -0.04 -0.70 5.90 -19.94 -0.12 -0.82 16 18 C -0.16 -2.59 9.90 22.67 0.22 -2.37 16 19 C 0.09 1.49 11.17 84.63 0.95 2.43 16 20 N -0.51 -10.06 10.34 -196.15 -2.03 -12.09 16 21 C 0.09 1.56 11.17 84.63 0.95 2.50 16 22 C -0.16 -2.79 9.49 22.67 0.22 -2.57 16 23 C -0.10 -3.72 4.91 -19.86 -0.10 -3.82 16 24 C -0.12 -3.97 9.33 22.27 0.21 -3.76 16 25 C -0.12 -3.37 10.05 22.27 0.22 -3.15 16 26 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 27 C -0.12 -3.55 10.05 22.27 0.22 -3.32 16 28 C -0.13 -4.77 9.67 22.27 0.22 -4.55 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 31 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.41 13.13 8.58 -92.71 -0.80 12.34 16 33 H 0.16 2.96 6.17 -2.91 -0.02 2.94 16 34 H 0.13 3.25 7.52 -2.91 -0.02 3.23 16 35 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 37 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.16 2.09 6.30 -2.91 -0.02 2.07 16 39 H 0.12 3.72 7.71 -2.91 -0.02 3.69 16 40 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 43 H 0.11 3.99 8.04 -2.91 -0.02 3.97 16 Total: -1.00 -71.70 376.07 3.88 -67.82 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.23 Total: 28.93 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 5.24 Total: -24.58 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -3.55 Total: -91.94 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.07 Total: -25.19 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -71.70 3.88 -67.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153382078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.563 kcal (2) G-P(sol) polarization free energy of solvation -71.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds