Wall clock time and date at job start Tue Mar 31 2020 13:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00097 * 2 1 4 4 H 1.48500 * 109.47289 * 270.00511 * 3 2 1 5 5 H 1.48505 * 109.47029 * 30.00305 * 3 2 1 6 6 H 1.48500 * 109.47081 * 149.99959 * 3 2 1 7 7 C 1.37881 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99716 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99998 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46636 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47451 * 55.00332 * 10 9 7 12 12 N 1.46494 * 109.46982 * 294.99501 * 10 9 7 13 13 C 1.34784 * 119.99635 * 155.00372 * 12 10 9 14 14 O 1.21659 * 120.00148 * 0.02562 * 13 12 10 15 15 C 1.46655 * 119.99522 * 180.02562 * 13 12 10 16 16 C 1.34644 * 119.99441 * 179.97438 * 15 13 12 17 17 C 1.47404 * 119.99734 * 179.97438 * 16 15 13 18 18 C 1.40132 * 120.94866 * 359.72343 * 17 16 15 19 19 C 1.37997 * 118.96608 * 179.77248 * 18 17 16 20 20 N 1.31880 * 120.92351 * 0.51045 * 19 18 17 21 21 C 1.31883 * 122.11792 * 359.73707 * 20 19 18 22 22 C 1.38001 * 120.91973 * 0.02562 * 21 20 19 23 23 C 1.50702 * 109.46756 * 174.99541 * 10 9 7 24 24 C 1.38241 * 119.99979 * 79.72719 * 23 10 9 25 25 C 1.38234 * 120.00314 * 179.78673 * 24 23 10 26 26 C 1.38237 * 119.99567 * 0.44366 * 25 24 23 27 27 C 1.38234 * 120.00032 * 359.80908 * 26 25 24 28 28 C 1.38229 * 120.00616 * 259.99992 * 23 10 9 29 29 H 0.96997 * 120.00054 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47418 * 59.99734 * 9 7 2 31 31 H 1.09001 * 109.46692 * 299.99585 * 9 7 2 32 32 H 0.96995 * 120.00292 * 335.27805 * 12 10 9 33 33 H 1.07999 * 120.00428 * 0.02562 * 15 13 12 34 34 H 1.07999 * 120.00131 * 0.02562 * 16 15 13 35 35 H 1.08008 * 120.51721 * 359.97438 * 18 17 16 36 36 H 1.08004 * 119.54126 * 180.22360 * 19 18 17 37 37 H 1.08001 * 119.54152 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.51714 * 180.02562 * 22 21 20 39 39 H 1.08008 * 119.99995 * 359.97438 * 24 23 10 40 40 H 1.07999 * 120.00099 * 180.27290 * 25 24 23 41 41 H 1.08000 * 119.99954 * 179.83998 * 26 25 24 42 42 H 1.08003 * 119.99753 * 180.02562 * 27 26 25 43 43 H 1.08005 * 119.99704 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 1 2.9294 -3.5560 0.8392 12 7 3.0062 -3.6528 -1.2545 13 6 4.2309 -4.2135 -1.3028 14 8 4.7043 -4.7276 -0.3070 15 6 4.9929 -4.2037 -2.5559 16 6 6.2166 -4.7633 -2.6040 17 6 6.9822 -4.7540 -3.8635 18 6 6.4533 -4.1734 -5.0241 19 6 7.2075 -4.1834 -6.1797 20 7 8.4041 -4.7374 -6.2033 21 6 8.9378 -5.2991 -5.1362 22 6 8.2572 -5.3310 -3.9361 23 6 1.4959 -4.9638 0.1200 24 6 0.8894 -5.5196 -0.9909 25 6 0.2057 -6.7158 -0.8793 26 6 0.1207 -7.3516 0.3452 27 6 0.7227 -6.7932 1.4572 28 6 1.4101 -5.5992 1.3446 29 1 -0.4850 0.8400 0.0004 30 1 0.6246 -2.5563 -0.8919 31 1 0.6241 -2.5574 0.8881 32 1 2.6303 -3.2397 -2.0476 33 1 4.5728 -3.7469 -3.4398 34 1 6.6368 -5.2197 -1.7199 35 1 5.4721 -3.7222 -5.0135 36 1 6.8104 -3.7353 -7.0786 37 1 9.9214 -5.7404 -5.2023 38 1 8.7006 -5.7924 -3.0662 39 1 0.9522 -5.0207 -1.9468 40 1 -0.2644 -7.1523 -1.7482 41 1 -0.4156 -8.2849 0.4331 42 1 0.6567 -7.2902 2.4138 43 1 1.8806 -5.1629 2.2135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153382178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:19 Heat of formation + Delta-G solvation = 31.286257 kcal Electronic energy + Delta-G solvation = -25267.876701 eV Core-core repulsion = 21663.740612 eV Total energy + Delta-G solvation = -3604.136089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.32488 -39.65926 -38.46857 -35.45879 -34.71740 -32.78508 -31.63821 -31.34724 -30.55286 -30.32186 -28.81458 -25.53973 -24.47270 -23.66057 -22.34600 -22.03286 -21.65183 -19.86751 -19.42165 -17.67695 -17.01443 -16.51555 -16.19694 -16.04887 -15.83077 -15.37480 -14.92901 -14.57294 -14.27673 -14.22134 -14.05457 -13.87139 -13.60251 -13.24104 -13.04998 -12.78025 -12.56926 -12.35294 -12.14113 -11.62569 -11.52908 -11.17881 -11.15032 -10.95619 -10.76625 -10.63811 -10.50311 -9.82436 -9.76913 -9.59785 -9.43395 -9.33040 -8.92882 -8.57689 -8.49674 -8.45011 -8.21656 -6.12939 -4.16755 0.31527 0.88842 1.74895 1.77642 1.94979 3.23965 3.31927 3.35824 3.50783 3.61903 3.75161 4.19132 4.20349 4.36436 4.44636 4.51091 4.76544 4.85322 5.01546 5.21192 5.23749 5.24516 5.27597 5.35286 5.37998 5.51478 5.52209 5.66289 5.75232 5.87702 5.91049 6.07404 6.23107 6.32281 6.33111 6.41299 6.42117 6.53836 6.81757 6.82381 6.84121 7.07319 7.37569 7.44933 7.57296 7.71481 7.83554 8.04805 8.21467 8.66039 8.89212 9.48647 10.97520 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007970 B = 0.003755 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.224846 B = 7454.352515 C =10147.990775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.183 3.817 11 H 0.088 0.912 12 N -0.691 5.691 13 C 0.538 3.462 14 O -0.550 6.550 15 C -0.167 4.167 16 C -0.056 4.056 17 C -0.016 4.016 18 C -0.162 4.162 19 C 0.100 3.900 20 N -0.489 5.489 21 C 0.097 3.903 22 C -0.158 4.158 23 C -0.071 4.071 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.262 0.738 30 H 0.025 0.975 31 H 0.035 0.965 32 H 0.402 0.598 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.139 0.861 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.550 -12.205 -8.047 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.079 3.921 11 H 0.106 0.894 12 N -0.339 5.339 13 C 0.326 3.674 14 O -0.430 6.430 15 C -0.189 4.189 16 C -0.076 4.076 17 C -0.024 4.024 18 C -0.182 4.182 19 C -0.057 4.057 20 N -0.198 5.198 21 C -0.059 4.059 22 C -0.177 4.177 23 C -0.073 4.073 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.127 4.127 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.237 0.763 33 H 0.148 0.852 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.175 0.825 37 H 0.174 0.826 38 H 0.157 0.843 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.173 -12.417 -8.108 17.437 hybrid contribution -0.392 1.238 0.415 1.363 sum 8.781 -11.179 -7.692 16.163 Atomic orbital electron populations 1.69956 1.06023 1.26866 1.50152 1.24986 0.94795 0.99237 0.95067 0.86599 0.79936 0.83394 0.78140 1.20650 1.21175 1.19840 1.21135 0.93086 0.90386 1.51425 0.92379 1.19396 0.93199 0.90087 0.98660 1.20277 0.93440 0.92045 0.86310 0.89412 1.45898 1.16643 1.56788 1.14545 1.18272 0.81900 0.78972 0.88298 1.90770 1.69716 1.46080 1.36465 1.23241 0.96058 1.01328 0.98279 1.22229 0.93529 0.96188 0.95609 1.19460 0.93993 0.95448 0.93459 1.22482 1.01833 1.00584 0.93313 1.22713 0.89937 0.95338 0.97665 1.67585 1.12501 1.08776 1.30941 1.22702 0.99646 0.95504 0.88057 1.22393 0.94782 1.00576 0.99991 1.20528 0.96857 0.96481 0.93393 1.20910 0.97614 0.95602 0.98494 1.21045 0.99929 0.95961 0.97380 1.21002 1.01010 1.00046 0.93221 1.21046 0.98539 0.96188 0.98310 1.21020 0.99117 0.95084 0.97431 0.92822 0.95698 0.94682 0.76281 0.85244 0.84210 0.84139 0.82496 0.82587 0.84274 0.86559 0.86717 0.86818 0.86576 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.57 8.84 -34.44 -0.30 -13.87 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.56 4.49 -27.88 -0.13 0.43 16 10 C 0.18 3.65 2.11 -69.08 -0.15 3.50 16 11 H 0.09 1.92 7.44 -51.93 -0.39 1.53 16 12 N -0.69 -11.99 4.04 -56.26 -0.23 -12.22 16 13 C 0.54 9.19 7.71 -12.86 -0.10 9.09 16 14 O -0.55 -11.21 15.90 5.22 0.08 -11.13 16 15 C -0.17 -2.16 9.44 -37.46 -0.35 -2.52 16 16 C -0.06 -0.67 9.50 -37.12 -0.35 -1.02 16 17 C -0.02 -0.16 5.90 -104.74 -0.62 -0.78 16 18 C -0.16 -1.57 9.49 -38.96 -0.37 -1.94 16 19 C 0.10 0.96 11.17 -17.62 -0.20 0.76 16 20 N -0.49 -5.32 10.34 -13.35 -0.14 -5.45 16 21 C 0.10 0.90 11.17 -17.62 -0.20 0.70 16 22 C -0.16 -1.46 9.90 -38.96 -0.39 -1.85 16 23 C -0.07 -1.30 4.91 -104.62 -0.51 -1.82 16 24 C -0.11 -1.78 9.32 -39.58 -0.37 -2.15 16 25 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 26 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 27 C -0.12 -1.82 10.05 -39.59 -0.40 -2.22 16 28 C -0.11 -1.85 9.67 -39.59 -0.38 -2.24 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.40 6.28 8.58 -40.82 -0.35 5.93 16 33 H 0.13 1.31 6.16 -52.49 -0.32 0.99 16 34 H 0.14 1.74 7.52 -52.49 -0.39 1.34 16 35 H 0.14 1.11 6.30 -52.48 -0.33 0.78 16 36 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.77 7.73 -52.48 -0.41 1.37 16 40 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 43 H 0.12 1.98 8.04 -52.48 -0.42 1.56 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -32.24 376.09 -10.14 -42.38 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.54 Total: 8.37 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -5.70 Total: -18.87 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.37 Total: -42.16 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.24 -10.14 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153382178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.663 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds