Wall clock time and date at job start Tue Mar 31 2020 13:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00097 * 2 1 4 4 H 1.48500 * 109.47289 * 270.00511 * 3 2 1 5 5 H 1.48505 * 109.47029 * 30.00305 * 3 2 1 6 6 H 1.48500 * 109.47081 * 149.99959 * 3 2 1 7 7 C 1.37881 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99716 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99998 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46636 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47451 * 55.00332 * 10 9 7 12 12 N 1.46494 * 109.46982 * 294.99501 * 10 9 7 13 13 C 1.34784 * 119.99635 * 155.00372 * 12 10 9 14 14 O 1.21659 * 120.00148 * 0.02562 * 13 12 10 15 15 C 1.46655 * 119.99522 * 180.02562 * 13 12 10 16 16 C 1.34644 * 119.99441 * 179.97438 * 15 13 12 17 17 C 1.47404 * 119.99734 * 179.97438 * 16 15 13 18 18 C 1.40132 * 120.94866 * 359.72343 * 17 16 15 19 19 C 1.37997 * 118.96608 * 179.77248 * 18 17 16 20 20 N 1.31880 * 120.92351 * 0.51045 * 19 18 17 21 21 C 1.31883 * 122.11792 * 359.73707 * 20 19 18 22 22 C 1.38001 * 120.91973 * 0.02562 * 21 20 19 23 23 C 1.50702 * 109.46756 * 174.99541 * 10 9 7 24 24 C 1.38241 * 119.99979 * 79.72719 * 23 10 9 25 25 C 1.38234 * 120.00314 * 179.78673 * 24 23 10 26 26 C 1.38237 * 119.99567 * 0.44366 * 25 24 23 27 27 C 1.38234 * 120.00032 * 359.80908 * 26 25 24 28 28 C 1.38229 * 120.00616 * 259.99992 * 23 10 9 29 29 H 0.96997 * 120.00054 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47418 * 59.99734 * 9 7 2 31 31 H 1.09001 * 109.46692 * 299.99585 * 9 7 2 32 32 H 0.96995 * 120.00292 * 335.27805 * 12 10 9 33 33 H 1.07999 * 120.00428 * 0.02562 * 15 13 12 34 34 H 1.07999 * 120.00131 * 0.02562 * 16 15 13 35 35 H 1.08008 * 120.51721 * 359.97438 * 18 17 16 36 36 H 1.08004 * 119.54126 * 180.22360 * 19 18 17 37 37 H 1.08001 * 119.54152 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.51714 * 180.02562 * 22 21 20 39 39 H 1.08008 * 119.99995 * 359.97438 * 24 23 10 40 40 H 1.07999 * 120.00099 * 180.27290 * 25 24 23 41 41 H 1.08000 * 119.99954 * 179.83998 * 26 25 24 42 42 H 1.08003 * 119.99753 * 180.02562 * 27 26 25 43 43 H 1.08005 * 119.99704 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 1 2.9294 -3.5560 0.8392 12 7 3.0062 -3.6528 -1.2545 13 6 4.2309 -4.2135 -1.3028 14 8 4.7043 -4.7276 -0.3070 15 6 4.9929 -4.2037 -2.5559 16 6 6.2166 -4.7633 -2.6040 17 6 6.9822 -4.7540 -3.8635 18 6 6.4533 -4.1734 -5.0241 19 6 7.2075 -4.1834 -6.1797 20 7 8.4041 -4.7374 -6.2033 21 6 8.9378 -5.2991 -5.1362 22 6 8.2572 -5.3310 -3.9361 23 6 1.4959 -4.9638 0.1200 24 6 0.8894 -5.5196 -0.9909 25 6 0.2057 -6.7158 -0.8793 26 6 0.1207 -7.3516 0.3452 27 6 0.7227 -6.7932 1.4572 28 6 1.4101 -5.5992 1.3446 29 1 -0.4850 0.8400 0.0004 30 1 0.6246 -2.5563 -0.8919 31 1 0.6241 -2.5574 0.8881 32 1 2.6303 -3.2397 -2.0476 33 1 4.5728 -3.7469 -3.4398 34 1 6.6368 -5.2197 -1.7199 35 1 5.4721 -3.7222 -5.0135 36 1 6.8104 -3.7353 -7.0786 37 1 9.9214 -5.7404 -5.2023 38 1 8.7006 -5.7924 -3.0662 39 1 0.9522 -5.0207 -1.9468 40 1 -0.2644 -7.1523 -1.7482 41 1 -0.4156 -8.2849 0.4331 42 1 0.6567 -7.2902 2.4138 43 1 1.8806 -5.1629 2.2135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153382178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:18 Heat of formation + Delta-G solvation = 13.614100 kcal Electronic energy + Delta-G solvation = -25268.643024 eV Core-core repulsion = 21663.740612 eV Total energy + Delta-G solvation = -3604.902411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.21942 -40.88337 -39.73129 -36.91105 -35.74647 -34.73413 -32.79738 -32.23297 -31.72491 -31.33354 -30.51766 -27.04804 -25.67407 -24.42165 -23.80768 -23.42374 -22.72362 -21.28546 -20.57795 -18.79696 -18.58260 -17.78904 -17.42567 -17.13157 -16.80234 -16.46719 -16.35306 -16.23576 -15.51976 -15.44903 -14.90719 -14.88909 -14.51357 -14.44191 -14.32764 -14.18002 -14.09739 -13.67220 -13.42990 -13.29607 -12.94449 -12.63272 -12.48471 -12.33040 -12.16589 -12.02570 -11.88073 -11.60473 -11.34457 -11.01806 -10.58481 -10.50309 -10.12451 -10.09320 -9.77115 -9.71529 -9.52471 -8.21082 -6.31390 -0.57996 0.19505 0.50513 0.55538 0.99591 1.38744 1.41087 1.51043 2.29493 2.35551 2.39459 2.93649 2.96891 3.13183 3.48234 3.59207 3.74599 3.95904 4.02511 4.03252 4.10410 4.18415 4.21016 4.25620 4.32007 4.45637 4.64672 4.67066 4.74964 4.78250 4.84150 4.89595 4.95231 5.12031 5.19538 5.25684 5.27021 5.42194 5.45138 5.59721 5.60717 5.63839 5.72406 5.77115 5.90083 6.15212 6.19777 6.68656 6.81403 7.00328 7.30777 7.37939 8.89605 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007970 B = 0.003755 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.224846 B = 7454.352515 C =10147.990775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.038 3.962 10 C 0.199 3.801 11 H 0.058 0.942 12 N -0.688 5.688 13 C 0.536 3.464 14 O -0.592 6.592 15 C -0.184 4.184 16 C -0.033 4.033 17 C -0.036 4.036 18 C -0.162 4.162 19 C 0.091 3.909 20 N -0.509 5.509 21 C 0.091 3.909 22 C -0.156 4.156 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.134 4.134 29 H 0.264 0.736 30 H 0.014 0.986 31 H 0.003 0.997 32 H 0.411 0.589 33 H 0.159 0.841 34 H 0.131 0.869 35 H 0.157 0.843 36 H 0.180 0.820 37 H 0.183 0.817 38 H 0.158 0.842 39 H 0.122 0.878 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.177 -13.268 -9.745 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.001 3.999 10 C 0.094 3.906 11 H 0.076 0.924 12 N -0.336 5.336 13 C 0.326 3.674 14 O -0.475 6.475 15 C -0.205 4.205 16 C -0.052 4.052 17 C -0.044 4.044 18 C -0.181 4.181 19 C -0.065 4.065 20 N -0.219 5.219 21 C -0.065 4.065 22 C -0.175 4.175 23 C -0.099 4.099 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.153 4.153 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.021 0.979 32 H 0.247 0.753 33 H 0.177 0.823 34 H 0.149 0.851 35 H 0.175 0.825 36 H 0.197 0.803 37 H 0.199 0.801 38 H 0.175 0.825 39 H 0.140 0.860 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.802 -13.478 -9.831 19.349 hybrid contribution -0.533 1.467 0.938 1.820 sum 9.269 -12.011 -8.893 17.586 Atomic orbital electron populations 1.70067 1.07453 1.27761 1.51237 1.25763 0.95548 1.02610 0.94738 0.85593 0.78448 0.79256 0.78619 1.19325 1.20982 1.19809 1.21400 0.92993 0.91600 1.50856 0.92842 1.19129 0.93253 0.91045 0.96474 1.19735 0.92210 0.92063 0.86566 0.92423 1.45776 1.16925 1.57105 1.13834 1.18878 0.81467 0.77764 0.89276 1.90740 1.70451 1.47909 1.38359 1.23090 0.96344 1.03825 0.97216 1.22282 0.92941 0.94020 0.96003 1.19484 0.94719 0.97099 0.93082 1.22704 1.02505 0.99959 0.92933 1.23123 0.89654 0.95154 0.98528 1.67628 1.13196 1.09261 1.31794 1.23150 1.00637 0.95136 0.87585 1.22654 0.94253 0.99812 1.00815 1.20434 0.98421 0.96267 0.94795 1.21086 0.98030 0.96691 0.98112 1.21448 0.98907 0.94957 0.98949 1.21476 0.99894 1.00948 0.92409 1.21388 0.97524 0.95138 1.00156 1.21180 1.00473 0.96623 0.96977 0.92693 0.96787 0.97865 0.75318 0.82338 0.85078 0.82526 0.80254 0.80051 0.82454 0.85959 0.83550 0.83116 0.83873 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.49 13.29 21.45 0.28 -53.20 16 2 C 0.01 0.67 5.46 84.66 0.46 1.13 16 3 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.53 -28.48 8.84 25.60 0.23 -28.26 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 9 C 0.04 1.90 4.49 29.85 0.13 2.04 16 10 C 0.20 8.41 2.11 44.25 0.09 8.51 16 11 H 0.06 2.74 7.44 -2.39 -0.02 2.72 16 12 N -0.69 -24.76 4.04 -450.13 -1.82 -26.58 16 13 C 0.54 18.79 7.71 86.44 0.67 19.46 16 14 O -0.59 -25.15 15.90 -4.22 -0.07 -25.22 16 15 C -0.18 -4.64 9.44 23.64 0.22 -4.41 16 16 C -0.03 -0.75 9.50 23.86 0.23 -0.53 16 17 C -0.04 -0.70 5.90 -19.94 -0.12 -0.82 16 18 C -0.16 -2.78 9.49 22.67 0.22 -2.57 16 19 C 0.09 1.56 11.17 84.63 0.95 2.50 16 20 N -0.51 -10.06 10.34 -196.15 -2.03 -12.08 16 21 C 0.09 1.49 11.17 84.63 0.95 2.43 16 22 C -0.16 -2.59 9.90 22.67 0.22 -2.37 16 23 C -0.10 -3.72 4.91 -19.87 -0.10 -3.81 16 24 C -0.12 -3.97 9.32 22.27 0.21 -3.76 16 25 C -0.12 -3.37 10.05 22.27 0.22 -3.15 16 26 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 27 C -0.12 -3.55 10.05 22.27 0.22 -3.33 16 28 C -0.13 -4.77 9.67 22.27 0.22 -4.55 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.41 13.12 8.58 -92.71 -0.80 12.33 16 33 H 0.16 2.96 6.16 -2.91 -0.02 2.94 16 34 H 0.13 3.25 7.52 -2.91 -0.02 3.23 16 35 H 0.16 2.08 6.30 -2.91 -0.02 2.06 16 36 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 37 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.12 3.72 7.73 -2.91 -0.02 3.70 16 40 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.11 3.99 8.04 -2.91 -0.02 3.97 16 Total: -1.00 -71.77 376.09 3.87 -67.90 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.23 Total: 28.74 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 5.24 Total: -24.54 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -3.56 Total: -91.87 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.07 Total: -25.22 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -71.77 3.87 -67.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153382178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.512 kcal (2) G-P(sol) polarization free energy of solvation -71.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds