Wall clock time and date at job start Tue Mar 31 2020 13:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99982 * 2 1 4 4 H 1.48500 * 109.46758 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46827 * 299.99552 * 3 2 1 6 6 H 1.48503 * 109.47223 * 59.99817 * 3 2 1 7 7 C 1.38813 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00169 * 159.05651 * 7 2 1 9 9 N 1.36934 * 120.00054 * 339.06374 * 7 2 1 10 10 C 1.46505 * 119.99919 * 326.08380 * 9 7 2 11 11 N 1.46494 * 109.47108 * 259.40779 * 10 9 7 12 12 C 1.33899 * 120.91955 * 76.39177 * 11 10 9 13 13 O 1.21824 * 127.08855 * 359.93628 * 12 11 10 14 14 S 1.72220 * 105.83101 * 179.97438 * 12 11 10 15 15 C 1.76561 * 94.66288 * 0.02562 * 14 12 11 16 16 C 1.33302 * 106.54029 * 359.76256 * 15 14 12 17 17 C 1.52350 * 121.76014 * 179.68976 * 16 15 14 18 18 C 1.52955 * 108.92561 * 342.34203 * 17 16 15 19 19 C 1.53177 * 109.57697 * 51.55806 * 18 17 16 20 20 C 1.50355 * 126.97333 * 179.97438 * 15 14 12 21 21 C 1.46497 * 120.00234 * 146.08655 * 9 7 2 22 22 C 1.54274 * 110.03142 * 308.62289 * 21 9 7 23 23 C 1.54963 * 104.15910 * 95.75370 * 22 21 9 24 24 C 1.54880 * 102.77706 * 37.88881 * 23 22 21 25 25 C 1.53870 * 110.03392 * 65.83926 * 21 9 7 26 26 H 0.97002 * 119.99688 * 5.08282 * 1 2 3 27 27 H 1.09005 * 109.46934 * 19.41321 * 10 9 7 28 28 H 1.09001 * 109.46929 * 139.40994 * 10 9 7 29 29 H 1.09001 * 109.70110 * 222.41385 * 17 16 15 30 30 H 1.08998 * 109.37657 * 102.08418 * 17 16 15 31 31 H 1.09002 * 109.45509 * 291.52354 * 18 17 16 32 32 H 1.09005 * 109.45298 * 171.59074 * 18 17 16 33 33 H 1.08998 * 109.58509 * 170.39315 * 19 18 17 34 34 H 1.08995 * 109.58549 * 49.96076 * 19 18 17 35 35 H 1.08989 * 109.62271 * 284.31517 * 20 15 14 36 36 H 1.09002 * 109.62071 * 44.86786 * 20 15 14 37 37 H 1.09003 * 110.02053 * 187.23080 * 21 9 7 38 38 H 1.08998 * 110.48310 * 214.40252 * 22 21 9 39 39 H 1.09001 * 110.48124 * 337.03937 * 22 21 9 40 40 H 1.09003 * 110.71993 * 279.57015 * 23 22 21 41 41 H 1.09000 * 110.91651 * 156.29743 * 23 22 21 42 42 H 1.09004 * 110.48801 * 203.40068 * 24 23 22 43 43 H 1.08998 * 110.60111 * 80.81915 * 24 23 22 44 44 H 1.09000 * 110.02930 * 359.94979 * 25 21 9 45 45 H 1.09001 * 110.03493 * 121.33572 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0368 -1.2332 -0.3338 9 7 1.3934 -2.3487 0.4248 10 6 0.4008 -2.2914 1.5008 11 7 1.0202 -2.7130 2.7596 12 6 1.8359 -1.8926 3.4337 13 8 2.1599 -0.7601 3.1227 14 16 2.3336 -2.7683 4.8306 15 6 1.4057 -4.2162 4.4304 16 6 0.7768 -3.9589 3.2836 17 6 -0.1248 -4.9890 2.6149 18 6 0.1855 -6.3702 3.1939 19 6 0.1339 -6.3090 4.7235 20 6 1.3306 -5.4904 5.2250 21 6 1.7261 -3.6327 -0.1972 22 6 1.6154 -3.5209 -1.7319 23 6 3.0649 -3.2300 -2.1962 24 6 3.9127 -4.1091 -1.2438 25 6 3.1862 -4.0062 0.1132 26 1 -0.4850 0.8368 -0.0744 27 1 0.0323 -1.2704 1.6011 28 1 -0.4302 -2.9560 1.2643 29 1 0.0574 -4.9942 1.5402 30 1 -1.1674 -4.7373 2.8091 31 1 1.1807 -6.6818 2.8764 32 1 -0.5513 -7.0885 2.8342 33 1 0.1849 -7.3184 5.1316 34 1 -0.7938 -5.8315 5.0390 35 1 2.2484 -6.0619 5.0877 36 1 1.1967 -5.2559 6.2810 37 1 1.0558 -4.4099 0.1699 38 1 1.2595 -4.4589 -2.1579 39 1 0.9535 -2.7000 -2.0077 40 1 3.3071 -2.1752 -2.0665 41 1 3.2096 -3.5333 -3.2332 42 1 4.9268 -3.7172 -1.1643 43 1 3.9303 -5.1426 -1.5896 44 1 3.6475 -3.2316 0.7259 45 1 3.2244 -4.9642 0.6317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153411493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:15 Heat of formation + Delta-G solvation = -0.163020 kcal Electronic energy + Delta-G solvation = -27193.381712 eV Core-core repulsion = 23723.325831 eV Total energy + Delta-G solvation = -3470.055881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.19792 -37.83279 -37.58652 -35.35768 -33.89786 -31.28738 -30.63825 -29.20988 -27.91118 -27.06440 -26.42578 -23.65461 -23.00395 -22.09548 -20.85014 -19.92754 -19.20285 -18.54874 -17.71416 -16.87420 -15.80524 -15.54075 -15.13332 -14.81739 -14.64100 -14.52693 -14.25651 -13.83330 -13.38945 -13.23501 -13.11080 -13.07186 -12.75331 -12.65604 -12.45569 -11.49709 -11.39528 -11.25226 -11.16216 -10.88484 -10.75882 -10.73351 -10.68470 -10.47296 -10.37863 -10.27194 -10.25788 -10.14359 -10.04235 -9.73390 -9.61299 -9.15011 -8.71441 -8.51248 -7.17409 -6.88358 -5.97683 -3.42781 1.74049 1.99842 2.44263 3.08598 3.39179 3.50529 3.53894 3.70684 4.45646 4.75909 4.85250 4.89324 5.11992 5.19320 5.28863 5.31972 5.34987 5.49403 5.52187 5.60584 5.65606 5.72751 5.78495 5.88725 5.93528 5.99393 6.10755 6.17694 6.22773 6.26215 6.28337 6.34499 6.39660 6.45961 6.55079 6.60865 6.71754 6.96539 7.03211 7.06494 7.15304 7.27207 7.67176 7.81629 8.30749 8.40829 9.01960 9.67147 10.15869 11.11617 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.006327 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.641074 B = 4424.162877 C = 5564.922790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.029 3.971 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.555 5.555 10 C 0.330 3.670 11 N -0.536 5.536 12 C 0.504 3.496 13 O -0.450 6.450 14 S -0.081 6.081 15 C -0.236 4.236 16 C 0.120 3.880 17 C -0.060 4.060 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.022 4.022 21 C 0.164 3.836 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.133 4.133 26 H 0.258 0.742 27 H 0.132 0.868 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 -14.316 5.085 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.171 4.171 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.274 5.274 10 C 0.121 3.879 11 N -0.261 5.261 12 C 0.183 3.817 13 O -0.326 6.326 14 S 0.161 5.839 15 C -0.356 4.356 16 C 0.006 3.994 17 C -0.099 4.099 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.062 4.062 21 C 0.057 3.943 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.173 4.173 26 H 0.068 0.932 27 H 0.149 0.851 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.038 -12.968 5.824 14.216 hybrid contribution -0.222 0.643 -0.996 1.206 sum -0.260 -12.325 4.829 13.240 Atomic orbital electron populations 1.69778 1.05661 1.26409 1.52241 1.25003 0.95028 0.98773 0.98270 0.86189 0.79873 0.83500 0.76913 1.20156 1.22031 1.21107 1.18920 0.94567 0.84494 1.39844 0.91651 1.44429 1.46676 1.03174 1.33080 1.21946 0.88243 1.03370 0.74372 1.48640 1.41835 1.11256 1.24380 1.21155 0.83353 0.89351 0.87836 1.90954 1.57326 1.15735 1.68621 1.84582 1.56400 1.11066 1.31827 1.23189 1.09952 1.00400 1.02089 1.20244 0.98205 0.87221 0.93713 1.20777 0.97596 0.91443 1.00113 1.21509 1.02464 0.95621 0.95614 1.21638 0.98408 0.99705 0.95625 1.19796 0.98593 0.90181 0.97605 1.21192 0.93224 0.87730 0.92112 1.22600 0.97036 1.00149 0.96352 1.22467 0.95606 1.00738 0.96699 1.22266 0.98440 0.98657 0.96295 1.22647 0.98049 0.99904 0.96669 0.93168 0.85087 0.92235 0.89547 0.89815 0.91328 0.91060 0.91273 0.91452 0.91060 0.91040 0.93349 0.93695 0.90125 0.90465 0.93497 0.92999 0.93043 0.91403 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 11.33 55.49 0.63 -24.09 16 2 C 0.03 0.79 4.90 -17.43 -0.09 0.71 16 3 Si 0.91 22.93 29.61 -169.99 -5.03 17.89 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 7 C -0.25 -6.45 7.10 -15.06 -0.11 -6.56 16 8 H 0.07 1.76 6.37 -52.49 -0.33 1.43 16 9 N -0.56 -12.65 2.54 -168.07 -0.43 -13.08 16 10 C 0.33 7.31 5.21 -63.75 -0.33 6.98 16 11 N -0.54 -10.89 2.86 -119.75 -0.34 -11.23 16 12 C 0.50 11.38 8.26 53.66 0.44 11.83 16 13 O -0.45 -11.98 17.40 5.08 0.09 -11.89 16 14 S -0.08 -1.49 22.96 -107.50 -2.47 -3.95 16 15 C -0.24 -3.62 6.41 -36.20 -0.23 -3.86 16 16 C 0.12 1.96 6.59 -81.03 -0.53 1.43 16 17 C -0.06 -0.75 5.01 -27.09 -0.14 -0.89 16 18 C -0.11 -1.11 5.85 -26.66 -0.16 -1.26 16 19 C -0.11 -1.04 5.99 -26.42 -0.16 -1.20 16 20 C -0.02 -0.25 6.27 -27.83 -0.17 -0.42 16 21 C 0.16 3.16 3.49 -66.81 -0.23 2.92 16 22 C -0.12 -2.26 6.03 -25.03 -0.15 -2.41 16 23 C -0.12 -2.07 6.51 -24.70 -0.16 -2.23 16 24 C -0.12 -1.95 6.83 -25.08 -0.17 -2.12 16 25 C -0.13 -2.45 6.25 -25.61 -0.16 -2.61 16 26 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 27 H 0.13 3.45 5.37 -51.93 -0.28 3.17 16 28 H 0.06 1.20 6.50 -51.93 -0.34 0.86 16 29 H 0.09 1.15 5.22 -51.93 -0.27 0.88 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 35 H 0.07 0.76 8.14 -51.94 -0.42 0.33 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.86 5.65 -51.93 -0.29 0.56 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.74 7.80 -51.93 -0.41 1.33 16 40 H 0.08 1.55 6.48 -51.93 -0.34 1.22 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.48 7.49 -51.93 -0.39 1.09 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -29.18 355.55 -11.39 -40.58 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.85 Total: 0.12 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.35 Total: 0.29 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.14 Total: -48.40 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.03 Total: 17.89 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.47 Total: -3.95 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.18 -11.39 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153411493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.414 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds