Wall clock time and date at job start Tue Mar 31 2020 13:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86806 * 120.00208 * 2 1 4 4 H 1.48497 * 109.46835 * 269.99869 * 3 2 1 5 5 H 1.48501 * 109.46659 * 29.99664 * 3 2 1 6 6 H 1.48497 * 109.46992 * 149.99743 * 3 2 1 7 7 C 1.40049 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.46378 * 119.99836 * 0.02562 * 7 2 1 10 10 O 1.21684 * 120.00109 * 0.02562 * 9 7 2 11 11 N 1.34772 * 119.99675 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99779 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47482 * 174.35388 * 12 11 9 14 14 H 1.09003 * 109.46980 * 56.69661 * 13 12 11 15 15 C 1.50701 * 109.47187 * 296.70433 * 13 12 11 16 16 C 1.38246 * 119.97184 * 279.72595 * 15 13 12 17 17 C 1.38199 * 120.02340 * 179.72236 * 16 15 13 18 18 C 1.38455 * 119.97499 * 0.57075 * 17 16 15 19 19 F 1.35101 * 120.02678 * 179.67916 * 18 17 16 20 20 C 1.38466 * 119.94878 * 359.69934 * 18 17 16 21 21 C 1.38191 * 119.97196 * 0.02562 * 20 18 17 22 22 N 1.46890 * 109.47550 * 176.70197 * 13 12 11 23 23 C 1.47022 * 111.00079 * 303.29205 * 22 13 12 24 24 C 1.53092 * 109.25865 * 177.60576 * 23 22 13 25 25 O 1.43016 * 109.25776 * 56.85116 * 24 23 22 26 26 C 1.43022 * 113.73915 * 301.32677 * 25 24 23 27 27 C 1.47017 * 111.00307 * 179.66102 * 22 13 12 28 28 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00274 * 359.97438 * 11 9 7 30 30 H 1.09005 * 109.47382 * 294.35179 * 12 11 9 31 31 H 1.09001 * 109.47590 * 54.35322 * 12 11 9 32 32 H 1.08002 * 119.98740 * 359.97275 * 16 15 13 33 33 H 1.07999 * 120.01202 * 180.24680 * 17 16 15 34 34 H 1.07998 * 120.01262 * 179.97438 * 20 18 17 35 35 H 1.07999 * 119.98290 * 180.02562 * 21 20 18 36 36 H 1.08995 * 109.50208 * 297.54372 * 23 22 13 37 37 H 1.08995 * 109.50123 * 57.67495 * 23 22 13 38 38 H 1.08993 * 109.51043 * 296.91377 * 24 23 22 39 39 H 1.09004 * 109.54074 * 176.80300 * 24 23 22 40 40 H 1.08995 * 109.50510 * 298.73605 * 26 25 24 41 41 H 1.09002 * 109.54007 * 178.62677 * 26 25 24 42 42 H 1.09007 * 109.50086 * 302.32541 * 27 22 13 43 43 H 1.08996 * 109.50520 * 62.40809 * 27 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4401 0.7001 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9489 -3.6477 0.0005 12 6 1.2164 -4.9164 0.0000 13 6 2.2046 -6.0759 -0.1418 14 1 2.9402 -6.0265 0.6610 15 6 2.9058 -5.9784 -1.4722 16 6 2.2768 -6.4264 -2.6189 17 6 2.9166 -6.3323 -3.8402 18 6 4.1927 -5.8000 -3.9135 19 9 4.8216 -5.7135 -5.1060 20 6 4.8239 -5.3569 -2.7635 21 6 4.1799 -5.4467 -1.5442 22 7 1.4786 -7.3504 -0.0632 23 6 0.7176 -7.4468 1.1911 24 6 -0.0689 -8.7602 1.2048 25 8 0.8367 -9.8541 1.0356 26 6 1.5939 -9.7925 -0.1762 27 6 2.3972 -8.4896 -0.2039 28 1 -0.4850 0.8401 -0.0004 29 1 2.9189 -3.6477 0.0002 30 1 0.6674 -5.0194 0.9360 31 1 0.5164 -4.9315 -0.8354 32 1 1.2835 -6.8463 -2.5608 33 1 2.4235 -6.6786 -4.7365 34 1 5.8194 -4.9419 -2.8194 35 1 4.6719 -5.1008 -0.6472 36 1 1.4053 -7.4255 2.0365 37 1 0.0259 -6.6076 1.2624 38 1 -0.7940 -8.7588 0.3911 39 1 -0.5900 -8.8631 2.1567 40 1 0.9170 -9.8211 -1.0301 41 1 2.2757 -10.6416 -0.2236 42 1 2.9314 -8.4115 -1.1509 43 1 3.1122 -8.4844 0.6188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153481852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:39 Heat of formation + Delta-G solvation = -92.054636 kcal Electronic energy + Delta-G solvation = -27619.871665 eV Core-core repulsion = 23579.617889 eV Total energy + Delta-G solvation = -4040.253776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.84153 -40.29207 -38.83563 -37.31442 -36.05841 -33.34921 -32.34927 -31.50166 -31.07752 -30.84413 -28.33926 -26.78234 -25.27970 -24.21280 -23.17958 -22.59365 -21.02084 -20.15394 -19.67302 -17.63580 -17.36787 -16.80417 -16.41417 -16.12587 -15.62725 -15.54359 -15.31419 -15.19499 -15.12779 -14.64951 -14.23318 -14.03848 -13.91414 -13.59066 -13.44743 -13.28134 -12.99627 -12.64912 -12.31428 -12.18467 -11.88256 -11.81847 -11.50593 -11.22837 -11.13918 -11.01038 -10.92643 -10.72762 -10.56381 -10.45974 -10.23709 -9.80675 -9.04165 -8.86220 -8.52250 -8.48056 -7.64484 -7.53525 -6.20120 -4.65349 1.16935 1.29794 3.13245 3.19993 3.22938 3.45780 3.65849 3.75858 4.10770 4.30533 4.51995 4.59051 4.76232 4.78549 4.85240 4.92063 4.98967 5.02201 5.05501 5.17934 5.26517 5.33372 5.39848 5.43809 5.50187 5.51220 5.66613 5.74581 5.80728 5.84392 5.92929 6.01616 6.16211 6.26661 6.34243 6.44897 6.48650 6.82036 6.91967 6.95040 7.00189 7.41984 7.88467 8.05185 8.30172 9.01344 9.49570 10.58438 10.76810 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010212 B = 0.004268 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.088503 B = 6559.256384 C = 8753.408262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.557 3.443 10 O -0.580 6.580 11 N -0.764 5.764 12 C 0.144 3.856 13 C 0.116 3.884 14 H 0.055 0.945 15 C -0.077 4.077 16 C -0.063 4.063 17 C -0.157 4.157 18 C 0.092 3.908 19 F -0.145 7.145 20 C -0.151 4.151 21 C -0.083 4.083 22 N -0.525 5.525 23 C 0.011 3.989 24 C 0.065 3.935 25 O -0.389 6.389 26 C 0.066 3.934 27 C 0.017 3.983 28 H 0.268 0.732 29 H 0.377 0.623 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.044 0.956 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.971 -17.172 -2.028 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.462 6.462 11 N -0.421 5.421 12 C 0.018 3.982 13 C 0.008 3.992 14 H 0.072 0.928 15 C -0.078 4.078 16 C -0.081 4.081 17 C -0.175 4.175 18 C 0.073 3.927 19 F -0.124 7.124 20 C -0.170 4.170 21 C -0.102 4.102 22 N -0.251 5.251 23 C -0.117 4.117 24 C -0.012 4.012 25 O -0.307 6.307 26 C -0.011 4.011 27 C -0.112 4.112 28 H 0.079 0.921 29 H 0.209 0.791 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.063 0.937 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.570 -17.235 -2.314 18.260 hybrid contribution 1.679 1.232 0.175 2.090 sum 7.249 -16.003 -2.140 17.698 Atomic orbital electron populations 1.70019 1.07032 1.27240 1.35347 1.25688 0.94598 1.00227 0.92611 0.86399 0.80158 0.81503 0.78859 1.19734 1.20443 1.18934 1.20856 0.93508 0.89375 1.54427 0.91548 1.18180 0.87180 0.82273 0.76295 1.90601 1.14061 1.86758 1.54828 1.46083 1.08403 1.04639 1.82962 1.20881 0.93229 0.82840 1.01234 1.20798 0.94938 0.89899 0.93582 0.92758 1.19698 0.93952 0.99092 0.95071 1.20892 0.99947 0.96920 0.90357 1.21138 0.93979 1.02980 0.99445 1.17732 0.92231 1.01982 0.80781 1.91477 1.82181 1.94364 1.44334 1.21032 1.01401 1.02975 0.91586 1.20863 0.94090 0.97817 0.97405 1.62118 1.26328 1.01249 1.35404 1.22926 0.98437 0.99858 0.90431 1.22680 0.91397 0.84748 1.02340 1.87968 1.55612 1.46093 1.41043 1.22635 0.94455 0.96554 0.87497 1.22811 0.94827 0.91179 1.02334 0.92117 0.79118 0.93065 0.91926 0.84294 0.85013 0.84888 0.85190 0.93727 0.88293 0.92078 0.88401 0.92247 0.88706 0.89364 0.93998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.93 11.83 55.55 0.66 -22.28 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.07 29.56 -169.99 -5.02 15.04 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.54 -15.23 9.54 -35.63 -0.34 -15.57 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.56 15.58 7.75 -12.99 -0.10 15.48 16 10 O -0.58 -18.56 15.01 5.20 0.08 -18.48 16 11 N -0.76 -16.46 5.28 -61.72 -0.33 -16.79 16 12 C 0.14 2.62 4.85 -4.04 -0.02 2.60 16 13 C 0.12 1.58 1.80 -68.87 -0.12 1.45 16 14 H 0.05 0.72 8.00 -51.93 -0.42 0.30 16 15 C -0.08 -1.03 3.43 -104.62 -0.36 -1.38 16 16 C -0.06 -0.81 8.37 -39.59 -0.33 -1.14 16 17 C -0.16 -1.97 10.03 -39.52 -0.40 -2.36 16 18 C 0.09 1.22 7.30 -39.42 -0.29 0.93 16 19 F -0.14 -1.98 17.27 2.25 0.04 -1.94 16 20 C -0.15 -1.88 10.03 -39.51 -0.40 -2.28 16 21 C -0.08 -1.04 8.85 -39.60 -0.35 -1.39 16 22 N -0.53 -6.27 3.89 -227.72 -0.89 -7.15 16 23 C 0.01 0.13 5.26 -3.71 -0.02 0.11 16 24 C 0.07 0.67 7.01 37.20 0.26 0.93 16 25 O -0.39 -4.42 10.83 -35.23 -0.38 -4.81 16 26 C 0.07 0.62 7.01 37.21 0.26 0.88 16 27 C 0.02 0.17 5.29 -3.71 -0.02 0.15 16 28 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 29 H 0.38 7.17 7.48 -40.82 -0.31 6.87 16 30 H 0.05 0.97 6.12 -51.93 -0.32 0.65 16 31 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 32 H 0.14 1.73 7.71 -52.49 -0.40 1.33 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.13 1.42 7.98 -52.49 -0.42 1.00 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.10 1.25 6.05 -51.93 -0.31 0.93 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.88 6.37 -51.92 -0.33 0.55 16 43 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 355.93 15.07 5.36 5.36 Total: -1.00 -34.19 355.93 -8.65 -42.85 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.86 Total: 7.42 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.32 Total: 0.77 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.56 Total: -46.21 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.30 Total: -23.29 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.19 -8.65 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153481852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.207 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds