Wall clock time and date at job start Tue Mar 31 2020 13:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86797 * 119.99751 * 2 1 4 4 H 1.48494 * 109.47263 * 274.99864 * 3 2 1 5 5 H 1.48496 * 109.47064 * 35.00076 * 3 2 1 6 6 H 1.48501 * 109.47007 * 155.00001 * 3 2 1 7 7 C 1.40046 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99661 * 185.24020 * 7 2 1 9 9 C 1.46370 * 120.00499 * 5.24811 * 7 2 1 10 10 O 1.21693 * 120.00040 * 5.23115 * 9 7 2 11 11 N 1.34780 * 120.00430 * 185.23291 * 9 7 2 12 12 C 1.46491 * 120.00223 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47298 * 173.53428 * 12 11 9 14 14 H 1.09004 * 109.47060 * 57.49084 * 13 12 11 15 15 C 1.50701 * 109.47497 * 177.49025 * 13 12 11 16 16 C 1.38241 * 119.97152 * 255.47648 * 15 13 12 17 17 C 1.38207 * 120.02201 * 180.27641 * 16 15 13 18 18 C 1.38457 * 119.97097 * 359.50904 * 17 16 15 19 19 F 1.35100 * 120.02289 * 180.21150 * 18 17 16 20 20 C 1.38457 * 119.95188 * 0.48333 * 18 17 16 21 21 C 1.38201 * 119.97368 * 359.75014 * 20 18 17 22 22 N 1.46896 * 109.47066 * 297.49312 * 13 12 11 23 23 C 1.47015 * 111.00238 * 95.57432 * 22 13 12 24 24 C 1.53093 * 109.25865 * 177.60797 * 23 22 13 25 25 O 1.43023 * 109.26112 * 56.84561 * 24 23 22 26 26 C 1.43010 * 113.73792 * 301.33167 * 25 24 23 27 27 C 1.47016 * 111.00141 * 331.93690 * 22 13 12 28 28 H 0.97005 * 120.00305 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99561 * 0.02562 * 11 9 7 30 30 H 1.09005 * 109.47323 * 53.53658 * 12 11 9 31 31 H 1.09002 * 109.47232 * 293.53419 * 12 11 9 32 32 H 1.07998 * 119.99039 * 359.97438 * 16 15 13 33 33 H 1.08004 * 120.00895 * 179.71789 * 17 16 15 34 34 H 1.08002 * 120.01131 * 179.72415 * 20 18 17 35 35 H 1.07996 * 119.98835 * 179.97438 * 21 20 18 36 36 H 1.08999 * 109.50433 * 297.53817 * 23 22 13 37 37 H 1.08994 * 109.50778 * 57.67434 * 23 22 13 38 38 H 1.09001 * 109.50895 * 296.91565 * 24 23 22 39 39 H 1.09002 * 109.54625 * 176.80502 * 24 23 22 40 40 H 1.09000 * 109.50614 * 298.73273 * 26 25 24 41 41 H 1.08997 * 109.54395 * 178.62601 * 26 25 24 42 42 H 1.09000 * 109.50604 * 302.32929 * 27 22 13 43 43 H 1.08996 * 109.50515 * 62.45632 * 27 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3825 2.1074 -1.3947 5 1 1.4949 2.6198 0.8030 6 1 3.5870 1.4120 0.5917 7 6 2.0069 -1.2129 0.0005 8 1 3.0836 -1.2148 0.0860 9 6 1.2797 -2.4779 -0.1148 10 8 0.0780 -2.4736 -0.3067 11 7 1.9409 -3.6475 -0.0085 12 6 1.2130 -4.9136 -0.1234 13 6 2.2083 -6.0756 -0.1284 14 1 2.8107 -6.0419 0.7795 15 6 1.4568 -7.3806 -0.1845 16 6 1.3413 -8.1604 0.9511 17 6 0.6572 -9.3602 0.8995 18 6 0.0788 -9.7761 -0.2878 19 9 -0.5938 -10.9466 -0.3384 20 6 0.1951 -8.9941 -1.4245 21 6 0.8837 -7.7971 -1.3716 22 7 3.0849 -5.9644 -1.3019 23 6 4.3426 -5.2854 -0.9578 24 6 5.2483 -5.2444 -2.1914 25 8 4.5577 -4.5949 -3.2623 26 6 3.3286 -5.2303 -3.6239 27 6 2.4034 -5.2712 -2.4048 28 1 -0.4851 0.8401 0.0004 29 1 2.8987 -3.6509 0.1448 30 1 0.6412 -4.9210 -1.0515 31 1 0.5340 -5.0204 0.7226 32 1 1.7899 -7.8343 1.8778 33 1 0.5710 -9.9714 1.7857 34 1 -0.2519 -9.3197 -2.3522 35 1 0.9749 -7.1872 -2.2582 36 1 4.1289 -4.2683 -0.6292 37 1 4.8428 -5.8298 -0.1569 38 1 5.5056 -6.2612 -2.4880 39 1 6.1585 -4.6922 -1.9573 40 1 3.5301 -6.2467 -3.9621 41 1 2.8497 -4.6683 -4.4256 42 1 1.4882 -5.8053 -2.6602 43 1 2.1588 -4.2539 -2.0993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153481955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:41 Heat of formation + Delta-G solvation = -101.937206 kcal Electronic energy + Delta-G solvation = -27916.806856 eV Core-core repulsion = 23876.124539 eV Total energy + Delta-G solvation = -4040.682317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.87551 -41.56484 -39.73286 -39.25374 -37.35223 -34.82672 -34.09079 -32.75779 -32.41158 -31.79768 -29.59166 -28.36680 -26.79059 -25.40285 -24.16264 -23.79026 -22.06456 -21.65524 -21.15211 -19.28974 -18.62486 -17.94413 -17.54457 -17.38715 -17.00463 -16.57751 -16.48718 -16.34831 -16.12409 -15.94385 -15.81727 -15.62413 -15.08562 -14.74374 -14.47021 -14.39349 -14.23855 -14.00429 -13.69634 -13.23814 -13.18793 -13.00661 -12.85921 -12.73891 -12.71224 -12.56682 -12.16933 -12.01539 -11.92320 -11.85943 -11.39465 -10.96232 -10.59796 -10.03561 -9.94702 -9.73794 -9.53698 -9.21013 -8.33771 -6.87806 0.14443 0.31886 1.37923 1.39395 1.54717 2.21732 2.43681 2.49211 2.80091 2.97206 3.03480 3.30905 3.58840 3.66455 3.80310 3.85223 3.99238 3.99647 4.05492 4.12724 4.24408 4.27691 4.40304 4.42202 4.46727 4.59032 4.65247 4.72973 4.82655 4.87893 4.96418 5.00717 5.04790 5.12400 5.19448 5.28749 5.30139 5.55404 5.81873 5.84452 5.92466 5.97450 6.14741 6.20365 6.24865 6.84375 7.45414 8.44915 8.63482 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.003778 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.073208 B = 7410.406675 C = 8666.876012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.032 3.968 3 Si 0.994 3.006 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.247 1.247 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.542 3.458 10 O -0.632 6.632 11 N -0.750 5.750 12 C 0.116 3.884 13 C 0.125 3.875 14 H 0.107 0.893 15 C -0.078 4.078 16 C -0.082 4.082 17 C -0.152 4.152 18 C 0.077 3.923 19 F -0.149 7.149 20 C -0.157 4.157 21 C -0.082 4.082 22 N -0.510 5.510 23 C 0.008 3.992 24 C 0.065 3.935 25 O -0.407 6.407 26 C 0.069 3.931 27 C 0.000 4.000 28 H 0.275 0.725 29 H 0.391 0.609 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.136 0.864 36 H 0.033 0.967 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.712 -16.820 -1.349 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.183 4.183 3 Si 0.814 3.186 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.171 1.171 7 C -0.609 4.609 8 H 0.101 0.899 9 C 0.346 3.654 10 O -0.519 6.519 11 N -0.408 5.408 12 C -0.010 4.010 13 C 0.016 3.984 14 H 0.125 0.875 15 C -0.079 4.079 16 C -0.101 4.101 17 C -0.170 4.170 18 C 0.058 3.942 19 F -0.128 7.128 20 C -0.176 4.176 21 C -0.100 4.100 22 N -0.234 5.234 23 C -0.121 4.121 24 C -0.011 4.011 25 O -0.326 6.326 26 C -0.008 4.008 27 C -0.128 4.128 28 H 0.085 0.915 29 H 0.228 0.772 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.171 0.829 33 H 0.173 0.827 34 H 0.165 0.835 35 H 0.153 0.847 36 H 0.051 0.949 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.856 -17.101 -1.730 19.336 hybrid contribution -0.372 1.195 0.431 1.324 sum 8.484 -15.906 -1.299 18.074 Atomic orbital electron populations 1.70156 1.09483 1.28992 1.36389 1.26903 0.95459 1.04807 0.91134 0.85059 0.79064 0.75404 0.79122 1.19059 1.19574 1.17057 1.21371 0.94842 0.90312 1.54401 0.89898 1.18534 0.86468 0.84202 0.76156 1.90558 1.17281 1.87932 1.56117 1.46074 1.10888 1.04565 1.79273 1.21567 0.95189 0.84235 1.00035 1.20761 0.92628 0.90052 0.94919 0.87516 1.19660 0.98573 0.95435 0.94282 1.21109 0.97592 0.92831 0.98542 1.21311 0.99899 0.98339 0.97481 1.17947 0.96986 0.83251 0.95981 1.91469 1.78309 1.45755 1.97233 1.21296 1.02216 0.95575 0.98506 1.21161 0.95085 0.95271 0.98466 1.62531 1.04506 1.50204 1.06144 1.23117 0.91222 0.97593 1.00118 1.22797 0.94507 0.98753 0.85072 1.87981 1.35821 1.55120 1.53693 1.22684 0.84023 0.98677 0.95379 1.23139 0.98367 0.98215 0.93061 0.91527 0.77219 0.93817 0.94772 0.82905 0.82731 0.83531 0.84664 0.94930 0.86956 0.91024 0.86954 0.90785 0.88613 0.89248 0.94601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.18 11.88 21.83 0.26 -49.92 16 2 C 0.03 1.80 5.49 85.30 0.47 2.27 16 3 Si 0.99 41.01 29.56 68.60 2.03 43.03 16 4 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.57 -32.34 9.54 24.83 0.24 -32.11 16 8 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 9 C 0.54 31.06 7.71 86.36 0.67 31.73 16 10 O -0.63 -42.12 15.06 -4.33 -0.07 -42.18 16 11 N -0.75 -32.58 3.86 -467.41 -1.80 -34.38 16 12 C 0.12 4.29 4.29 86.38 0.37 4.66 16 13 C 0.13 3.24 2.32 44.17 0.10 3.35 16 14 H 0.11 2.41 7.44 -2.39 -0.02 2.39 16 15 C -0.08 -1.84 4.95 -19.86 -0.10 -1.94 16 16 C -0.08 -1.65 9.66 22.26 0.22 -1.43 16 17 C -0.15 -2.97 10.03 22.31 0.22 -2.74 16 18 C 0.08 1.73 7.30 22.37 0.16 1.89 16 19 F -0.15 -3.47 17.27 44.97 0.78 -2.69 16 20 C -0.16 -3.44 10.03 22.31 0.22 -3.21 16 21 C -0.08 -1.92 9.22 22.26 0.21 -1.72 16 22 N -0.51 -12.57 4.28 -874.39 -3.74 -16.30 16 23 C 0.01 0.17 5.24 86.31 0.45 0.62 16 24 C 0.07 1.38 7.01 72.01 0.50 1.88 16 25 O -0.41 -11.50 10.83 -148.98 -1.61 -13.11 16 26 C 0.07 1.76 7.01 72.01 0.50 2.26 16 27 C 0.00 0.01 3.95 86.31 0.34 0.35 16 28 H 0.27 15.22 8.29 -92.70 -0.77 14.46 16 29 H 0.39 14.89 5.47 -92.71 -0.51 14.38 16 30 H 0.04 1.80 6.21 -2.38 -0.01 1.79 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.15 2.35 8.00 -2.91 -0.02 2.32 16 33 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 34 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.14 3.13 4.80 -2.91 -0.01 3.12 16 36 H 0.03 0.91 5.30 -2.39 -0.01 0.90 16 37 H 0.11 1.90 8.01 -2.39 -0.02 1.88 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.09 2.44 4.70 -2.39 -0.01 2.43 16 43 H 0.04 1.38 5.56 -2.39 -0.01 1.37 16 Total: -1.00 -76.71 346.26 0.98 -75.73 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: 0.55 Total: 33.96 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.58 Total: 5.86 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -5.28 Total: -100.61 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -1.68 Total: -55.29 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.03 kcal Total: -76.71 0.98 -75.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153481955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.203 kcal (2) G-P(sol) polarization free energy of solvation -76.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds