Wall clock time and date at job start Tue Mar 31 2020 13:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86793 * 119.99922 * 2 1 4 4 H 1.48495 * 109.47123 * 269.99972 * 3 2 1 5 5 H 1.48500 * 109.47215 * 30.00201 * 3 2 1 6 6 H 1.48500 * 109.46830 * 150.00259 * 3 2 1 7 7 C 1.40127 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.46174 * 119.99883 * 0.27076 * 7 2 1 10 10 O 1.21741 * 119.99968 * 359.72726 * 9 7 2 11 11 N 1.34780 * 119.99828 * 179.72179 * 9 7 2 12 12 C 1.39531 * 119.99889 * 176.37805 * 11 9 7 13 13 C 1.39050 * 120.08223 * 4.42832 * 12 11 9 14 14 C 1.38045 * 119.91452 * 179.78736 * 13 12 11 15 15 C 1.38349 * 120.07895 * 0.48858 * 14 13 12 16 16 C 1.38310 * 120.17159 * 359.73946 * 15 14 13 17 17 C 1.38083 * 120.08298 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.04286 * 179.97438 * 17 16 15 19 19 N 1.46892 * 109.47301 * 259.98038 * 18 17 16 20 20 C 1.47906 * 111.00065 * 169.99761 * 19 18 17 21 21 C 1.54603 * 102.62373 * 94.66088 * 20 19 18 22 22 C 1.51578 * 102.81939 * 25.61127 * 21 20 19 23 23 C 1.37916 * 131.57100 * 163.76956 * 22 21 20 24 24 C 1.38306 * 120.07815 * 180.28471 * 23 22 21 25 25 C 1.38305 * 119.88175 * 0.02637 * 24 23 22 26 26 C 1.37906 * 120.26882 * 359.85653 * 25 24 23 27 27 C 1.38968 * 107.94034 * 343.80435 * 22 21 20 28 28 H 0.97001 * 119.99918 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99781 * 356.38457 * 11 9 7 30 30 H 1.07996 * 120.04278 * 359.97438 * 13 12 11 31 31 H 1.07992 * 119.95849 * 180.24519 * 14 13 12 32 32 H 1.08002 * 119.91255 * 179.76514 * 15 14 13 33 33 H 1.08005 * 119.95685 * 180.02562 * 16 15 14 34 34 H 1.08996 * 109.46649 * 19.98280 * 18 17 16 35 35 H 1.08996 * 109.46723 * 139.97721 * 18 17 16 36 36 H 1.08998 * 110.78229 * 212.94513 * 20 19 18 37 37 H 1.08999 * 110.77528 * 336.19361 * 20 19 18 38 38 H 1.09001 * 110.74418 * 143.94317 * 21 20 19 39 39 H 1.09004 * 110.74633 * 267.27847 * 21 20 19 40 40 H 1.08000 * 119.96015 * 0.28759 * 23 22 21 41 41 H 1.07996 * 120.05626 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.86504 * 179.87234 * 25 24 23 43 43 H 1.07997 * 119.90262 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0464 -1.4000 5 1 1.4379 2.6526 0.7001 6 1 3.5379 1.4401 0.7000 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2136 -0.0010 9 6 1.2761 -2.4794 -0.0071 10 8 0.0587 -2.4794 -0.0071 11 7 1.9500 -3.6466 -0.0133 12 6 1.2545 -4.8542 0.0568 13 6 -0.1359 -4.8596 0.0402 14 6 -0.8206 -6.0565 0.1053 15 6 -0.1251 -7.2490 0.1971 16 6 1.2578 -7.2473 0.2187 17 6 1.9497 -6.0543 0.1490 18 6 3.4565 -6.0535 0.1731 19 7 3.9244 -5.7208 1.5252 20 6 5.3815 -5.9417 1.6512 21 6 5.9622 -4.5386 1.3608 22 6 4.8230 -3.6165 1.7473 23 6 4.7886 -2.2614 2.0017 24 6 3.5965 -1.6511 2.3474 25 6 2.4388 -2.4023 2.4382 26 6 2.4674 -3.7571 2.1825 27 6 3.6643 -4.3791 1.8303 28 1 -0.4850 0.8401 0.0004 29 1 2.9186 -3.6471 -0.0664 30 1 -0.6795 -3.9288 -0.0265 31 1 -1.9003 -6.0618 0.0885 32 1 -0.6635 -8.1836 0.2517 33 1 1.7972 -8.1803 0.2900 34 1 3.8248 -7.0406 -0.1062 35 1 3.8307 -5.3127 -0.5334 36 1 5.6378 -6.2651 2.6600 37 1 5.7277 -6.6667 0.9145 38 1 6.8396 -4.3484 1.9790 39 1 6.2035 -4.4319 0.3031 40 1 5.6934 -1.6761 1.9308 41 1 3.5700 -0.5901 2.5469 42 1 1.5085 -1.9258 2.7102 43 1 1.5598 -4.3379 2.2548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153615142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:39 Heat of formation + Delta-G solvation = 60.785420 kcal Electronic energy + Delta-G solvation = -28687.210636 eV Core-core repulsion = 25084.353727 eV Total energy + Delta-G solvation = -3602.856909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.45958 -40.34825 -38.97870 -37.40530 -35.48608 -34.68381 -33.40327 -31.91113 -30.72415 -30.29675 -29.33914 -28.00628 -26.43653 -23.98634 -23.79814 -22.64377 -21.91459 -21.89990 -20.97142 -19.45904 -18.07902 -17.66490 -17.43084 -16.99361 -16.40221 -16.37894 -16.15094 -15.92637 -15.31904 -15.17790 -14.74264 -14.58257 -14.45006 -14.39262 -13.91913 -13.82372 -13.53089 -13.21892 -13.15553 -12.98625 -12.87149 -12.80861 -12.50725 -12.41686 -12.20391 -12.08785 -11.98365 -11.68023 -11.61188 -11.22825 -10.87039 -10.15791 -9.62025 -9.45794 -9.34297 -8.74992 -8.30055 -8.24636 -6.75977 0.45021 0.65249 0.71913 0.76530 1.38361 1.38741 1.52718 2.20201 2.43619 2.74111 2.93647 3.07014 3.18748 3.70729 3.75296 3.91867 4.00601 4.06543 4.21499 4.27985 4.35406 4.38528 4.43853 4.53616 4.66542 4.70700 4.73573 4.80521 4.88222 4.96779 5.03811 5.05951 5.17942 5.25319 5.31664 5.32985 5.56817 5.62073 5.68026 5.72775 5.78617 5.88918 5.97552 6.00402 6.03958 6.12230 6.25684 6.48318 6.54558 6.86140 7.36838 8.42680 8.62077 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.007123 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.447721 B = 3930.189038 C = 5748.937386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.040 3.960 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.238 1.238 7 C -0.523 4.523 8 H 0.086 0.914 9 C 0.538 3.462 10 O -0.594 6.594 11 N -0.672 5.672 12 C 0.179 3.821 13 C -0.227 4.227 14 C -0.105 4.105 15 C -0.172 4.172 16 C -0.073 4.073 17 C -0.160 4.160 18 C 0.110 3.890 19 N -0.495 5.495 20 C 0.051 3.949 21 C -0.100 4.100 22 C -0.148 4.148 23 C -0.114 4.114 24 C -0.096 4.096 25 C -0.093 4.093 26 C -0.069 4.069 27 C 0.047 3.953 28 H 0.274 0.726 29 H 0.399 0.601 30 H 0.152 0.848 31 H 0.123 0.877 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.120 0.880 35 H 0.030 0.970 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.138 0.862 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.110 -10.157 2.228 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.559 4.559 8 H 0.104 0.896 9 C 0.347 3.653 10 O -0.482 6.482 11 N -0.312 5.312 12 C 0.079 3.921 13 C -0.248 4.248 14 C -0.124 4.124 15 C -0.191 4.191 16 C -0.092 4.092 17 C -0.164 4.164 18 C -0.015 4.015 19 N -0.213 5.213 20 C -0.074 4.074 21 C -0.138 4.138 22 C -0.150 4.150 23 C -0.133 4.133 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.091 4.091 27 C -0.048 4.048 28 H 0.084 0.916 29 H 0.236 0.764 30 H 0.168 0.832 31 H 0.141 0.859 32 H 0.162 0.838 33 H 0.170 0.830 34 H 0.139 0.861 35 H 0.048 0.952 36 H 0.113 0.887 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.156 0.844 41 H 0.137 0.863 42 H 0.101 0.899 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.884 -10.343 2.524 15.955 hybrid contribution -0.056 1.733 -0.580 1.828 sum 11.828 -8.610 1.944 14.758 Atomic orbital electron populations 1.70131 1.09240 1.28880 1.35498 1.26692 0.95219 1.04054 0.91667 0.85354 0.79736 0.76234 0.79372 1.19270 1.20118 1.16110 1.21154 0.94259 0.88819 1.51653 0.89623 1.18532 0.86729 0.83547 0.76501 1.90208 1.15631 1.85855 1.56460 1.44320 1.09891 1.04475 1.72504 1.18202 0.91897 0.86360 0.95647 1.22929 0.94484 1.01941 1.05417 1.21312 1.00029 0.92417 0.98617 1.21258 0.94620 0.97883 1.05352 1.21017 0.94029 0.96925 0.97187 1.19619 0.95745 0.91833 1.09199 1.21031 0.90392 1.02340 0.87747 1.60216 1.17281 1.18393 1.25444 1.23312 0.83271 0.96689 1.04171 1.21697 0.96449 0.93098 1.02575 1.21199 0.96449 0.94337 1.03059 1.20426 0.97993 0.93356 1.01544 1.20878 0.92116 0.99208 0.99290 1.20445 0.97587 0.92990 1.00245 1.20172 0.95619 0.94426 0.98834 1.19298 0.93770 0.89409 1.02357 0.91587 0.76365 0.83201 0.85892 0.83786 0.82968 0.86147 0.95224 0.88747 0.87092 0.87802 0.89560 0.84377 0.86272 0.89900 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.55 11.82 21.85 0.26 -46.29 16 2 C 0.04 2.09 5.50 85.33 0.47 2.56 16 3 Si 0.97 38.52 29.56 68.60 2.03 40.54 16 4 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.24 -8.51 7.11 99.48 0.71 -7.80 16 7 C -0.52 -27.19 6.59 24.79 0.16 -27.03 16 8 H 0.09 4.12 6.61 -2.91 -0.02 4.10 16 9 C 0.54 29.44 5.51 86.30 0.48 29.91 16 10 O -0.59 -37.21 11.38 -4.48 -0.05 -37.26 16 11 N -0.67 -31.07 2.75 -307.53 -0.84 -31.91 16 12 C 0.18 7.83 4.16 38.29 0.16 7.99 16 13 C -0.23 -10.74 9.06 22.42 0.20 -10.54 16 14 C -0.10 -3.99 10.04 22.25 0.22 -3.77 16 15 C -0.17 -5.31 10.04 22.31 0.22 -5.09 16 16 C -0.07 -2.16 9.66 22.25 0.22 -1.95 16 17 C -0.16 -5.55 5.14 -19.72 -0.10 -5.65 16 18 C 0.11 3.05 4.77 85.56 0.41 3.46 16 19 N -0.50 -14.07 5.05 -692.99 -3.50 -17.56 16 20 C 0.05 0.99 7.00 86.66 0.61 1.60 16 21 C -0.10 -2.04 6.97 30.67 0.21 -1.83 16 22 C -0.15 -4.42 5.99 -19.49 -0.12 -4.53 16 23 C -0.11 -3.58 9.98 22.21 0.22 -3.36 16 24 C -0.10 -3.57 7.67 22.30 0.17 -3.40 16 25 C -0.09 -4.02 6.36 22.21 0.14 -3.88 16 26 C -0.07 -2.90 5.73 22.47 0.13 -2.77 16 27 C 0.05 1.64 3.66 38.29 0.14 1.78 16 28 H 0.27 14.51 8.29 -92.71 -0.77 13.74 16 29 H 0.40 17.06 4.78 -92.71 -0.44 16.61 16 30 H 0.15 8.54 4.48 -66.53 -0.30 8.25 16 31 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 32 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.15 3.28 8.04 -2.91 -0.02 3.26 16 34 H 0.12 2.42 7.70 -2.39 -0.02 2.40 16 35 H 0.03 0.88 6.97 -2.39 -0.02 0.86 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 37 H 0.11 1.47 7.60 -2.39 -0.02 1.46 16 38 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 42 H 0.08 4.09 8.06 -2.91 -0.02 4.06 16 43 H 0.08 3.78 6.49 -2.91 -0.02 3.76 16 Total: -1.00 -70.12 331.40 2.16 -67.96 By element: Atomic # 1 Polarization: 50.69 SS G_CDS: 0.32 Total: 51.01 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 3.95 Total: -26.50 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -4.08 Total: -95.76 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.05 Total: -37.26 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.54 kcal Total: -70.12 2.16 -67.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153615142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.750 kcal (2) G-P(sol) polarization free energy of solvation -70.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds