Wall clock time and date at job start Tue Mar 31 2020 13:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99745 * 2 1 4 4 H 1.48498 * 109.47297 * 270.00356 * 3 2 1 5 5 H 1.48497 * 109.46726 * 30.00313 * 3 2 1 6 6 H 1.48493 * 109.46958 * 150.00319 * 3 2 1 7 7 C 1.37878 * 120.00564 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99351 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00259 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.46719 * 184.21983 * 9 7 2 11 11 C 1.46897 * 111.00441 * 300.01958 * 10 9 7 12 12 C 1.50700 * 109.47050 * 287.70545 * 11 10 9 13 13 C 1.34511 * 125.79596 * 93.00679 * 12 11 10 14 14 C 1.41378 * 106.84513 * 179.97438 * 13 12 11 15 15 C 1.34516 * 106.84212 * 0.02562 * 14 13 12 16 16 O 1.34304 * 108.41678 * 359.73499 * 15 14 13 17 17 C 1.46895 * 111.00114 * 63.97948 * 10 9 7 18 18 C 1.50699 * 109.47507 * 66.04034 * 17 10 9 19 19 C 1.39358 * 119.56331 * 89.99736 * 18 17 10 20 20 C 1.36075 * 121.06616 * 180.02562 * 19 18 17 21 21 C 1.40601 * 119.74786 * 0.26070 * 20 19 18 22 22 N 1.33677 * 121.06878 * 180.36686 * 21 20 19 23 23 C 1.31085 * 121.32163 * 179.76387 * 22 21 20 24 24 C 1.39331 * 121.74683 * 359.63276 * 23 22 21 25 25 C 1.36587 * 119.93380 * 0.02562 * 24 23 22 26 26 C 1.40762 * 118.15304 * 359.97438 * 25 24 23 27 27 C 1.36137 * 119.56499 * 270.02163 * 18 17 10 28 28 H 0.96996 * 120.00396 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.46933 * 64.21776 * 9 7 2 30 30 H 1.09000 * 109.46487 * 304.22001 * 9 7 2 31 31 H 1.09001 * 109.46953 * 47.69846 * 11 10 9 32 32 H 1.08996 * 109.47313 * 167.70393 * 11 10 9 33 33 H 1.08000 * 126.57672 * 359.96477 * 13 12 11 34 34 H 1.08000 * 126.58023 * 179.97438 * 14 13 12 35 35 H 1.07992 * 125.79155 * 180.02562 * 15 14 13 36 36 H 1.09002 * 109.47238 * 306.03843 * 17 10 9 37 37 H 1.08998 * 109.47142 * 186.04287 * 17 10 9 38 38 H 1.08003 * 119.46713 * 0.02562 * 19 18 17 39 39 H 1.07997 * 120.12794 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.13084 * 179.65523 * 23 22 21 41 41 H 1.08003 * 120.03485 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.92076 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.19576 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0012 -2.5751 -0.1035 11 6 3.5303 -3.3859 1.0273 12 6 4.2671 -2.9799 2.2777 13 6 3.8535 -2.0647 3.1724 14 6 4.8428 -2.0008 4.1804 15 6 5.8022 -2.8806 3.8411 16 8 5.4455 -3.4746 2.6906 17 6 3.6090 -3.1791 -1.3838 18 6 4.3095 -2.4658 -2.5114 19 6 5.5552 -2.9182 -2.9426 20 6 6.2150 -2.2969 -3.9576 21 6 5.6386 -1.1767 -4.5820 22 7 6.2602 -0.5507 -5.5863 23 6 5.7252 0.4912 -6.1750 24 6 4.4834 0.9930 -5.7909 25 6 3.7915 0.3961 -4.7757 26 6 4.3692 -0.7225 -4.1461 27 6 3.7174 -1.3878 -3.0951 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.7471 0.9242 30 1 3.8745 -0.6157 -0.8509 31 1 2.4612 -3.2271 1.1679 32 1 3.7172 -4.4398 0.8215 33 1 2.9408 -1.4889 3.1291 34 1 4.8310 -1.3668 5.0546 35 1 6.7038 -3.0792 4.4014 36 1 2.5302 -3.0902 -1.5122 37 1 3.8899 -4.2323 -1.3899 38 1 6.0041 -3.7757 -2.4634 39 1 7.1799 -2.6600 -4.2793 40 1 6.2610 0.9734 -6.9792 41 1 4.0687 1.8535 -6.2948 42 1 2.8279 0.7720 -4.4648 43 1 2.7521 -1.0461 -2.7517 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159578608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:59 Heat of formation + Delta-G solvation = 80.787422 kcal Electronic energy + Delta-G solvation = -26640.675487 eV Core-core repulsion = 23038.685929 eV Total energy + Delta-G solvation = -3601.989557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.03193 -40.57704 -37.99117 -36.12583 -33.25488 -32.57000 -32.48740 -31.24544 -30.09398 -29.38671 -27.89261 -25.89205 -24.18944 -23.65425 -22.58697 -21.73438 -21.21726 -20.48455 -19.54420 -17.77766 -17.32609 -16.70648 -16.56060 -16.35922 -15.75848 -14.87650 -14.63823 -14.45962 -14.13000 -13.99555 -13.98337 -13.82718 -13.48429 -12.84895 -12.83525 -12.53020 -12.35136 -12.30808 -12.18189 -11.66016 -11.50451 -11.35829 -11.15126 -10.96191 -10.78399 -10.73018 -10.43219 -10.29894 -10.03711 -9.67258 -9.40639 -9.31935 -8.71189 -8.47230 -8.05977 -7.86151 -7.35550 -6.23407 -4.23480 0.65508 1.04770 2.19512 2.29096 3.07264 3.17025 3.21293 3.27536 3.34551 3.50179 4.28968 4.34177 4.46673 4.84643 4.93366 4.93851 5.09751 5.11285 5.15534 5.24382 5.31399 5.50347 5.53095 5.57306 5.61003 5.75810 5.79753 5.88789 6.03670 6.15576 6.25444 6.29716 6.31169 6.37478 6.45636 6.52272 6.58052 6.59639 6.79466 6.81834 7.00045 7.02657 7.05959 7.15999 7.40897 7.66333 7.86104 7.87373 8.07357 8.29443 8.76941 9.39910 10.88548 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011381 B = 0.004726 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.691080 B = 5922.764867 C = 7410.911933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.080 3.920 3 Si 0.865 3.135 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.146 3.854 10 N -0.526 5.526 11 C 0.132 3.868 12 C 0.019 3.981 13 C -0.202 4.202 14 C -0.215 4.215 15 C -0.061 4.061 16 O -0.177 6.177 17 C 0.094 3.906 18 C -0.061 4.061 19 C -0.073 4.073 20 C -0.112 4.112 21 C 0.123 3.877 22 N -0.480 5.480 23 C 0.122 3.878 24 C -0.189 4.189 25 C -0.050 4.050 26 C -0.102 4.102 27 C -0.076 4.076 28 H 0.264 0.736 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.194 0.806 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.016 -3.395 -4.080 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.123 4.123 3 Si 0.692 3.308 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.019 3.981 10 N -0.250 5.250 11 C 0.004 3.996 12 C -0.032 4.032 13 C -0.222 4.222 14 C -0.234 4.234 15 C -0.129 4.129 16 O -0.073 6.073 17 C -0.034 4.034 18 C -0.062 4.062 19 C -0.093 4.093 20 C -0.130 4.130 21 C 0.002 3.998 22 N -0.188 5.188 23 C -0.051 4.051 24 C -0.209 4.209 25 C -0.076 4.076 26 C -0.104 4.104 27 C -0.095 4.095 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.168 0.832 34 H 0.158 0.842 35 H 0.211 0.789 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.170 0.830 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.355 -3.909 -4.409 11.914 hybrid contribution -1.400 1.812 0.531 2.351 sum 8.955 -2.096 -3.877 9.981 Atomic orbital electron populations 1.69906 1.06225 1.27089 1.49918 1.24852 0.94509 0.98823 0.94131 0.86996 0.80789 0.84118 0.78910 1.20045 1.21213 1.18727 1.21581 0.90373 0.94551 1.52430 0.90488 1.20334 0.94570 0.85592 0.97596 1.62404 1.58971 1.04079 0.99509 1.20469 0.96989 0.96528 0.85578 1.22447 0.85183 0.97865 0.97680 1.21724 1.02619 1.02172 0.95723 1.21799 0.96245 1.03252 1.02090 1.23808 1.01445 0.98908 0.88750 1.83990 1.34129 1.54682 1.34451 1.20984 0.98844 0.96130 0.87405 1.19573 0.94443 0.95928 0.96232 1.20840 0.93976 0.99428 0.95046 1.20649 1.00399 0.94924 0.97047 1.18862 0.91366 0.95843 0.93735 1.67981 1.34471 1.08408 1.07927 1.22822 0.92735 0.92074 0.97477 1.21795 0.97104 1.02293 0.99675 1.21593 0.99487 0.93046 0.93438 1.18903 0.95783 0.97398 0.98316 1.21267 1.00811 0.94157 0.93300 0.92571 0.94854 0.95104 0.89281 0.90937 0.83161 0.84195 0.78942 0.91702 0.91295 0.85441 0.85243 0.82954 0.84969 0.84425 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 13.96 55.43 0.77 -24.44 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.86 20.49 27.39 -169.99 -4.66 15.83 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.24 6.67 56.52 0.38 -5.86 16 7 C -0.55 -13.66 7.70 -34.44 -0.27 -13.93 16 8 H 0.08 2.05 6.19 -52.49 -0.33 1.72 16 9 C 0.15 3.26 3.65 -4.98 -0.02 3.24 16 10 N -0.53 -10.13 4.64 -238.97 -1.11 -11.24 16 11 C 0.13 2.38 5.34 -4.98 -0.03 2.35 16 12 C 0.02 0.35 6.32 -35.63 -0.23 0.12 16 13 C -0.20 -3.76 9.78 -39.71 -0.39 -4.15 16 14 C -0.21 -3.39 10.91 -39.70 -0.43 -3.82 16 15 C -0.06 -0.89 12.09 29.42 0.36 -0.54 16 16 O -0.18 -3.06 10.65 5.69 0.06 -3.00 16 17 C 0.09 1.61 4.92 -4.98 -0.02 1.58 16 18 C -0.06 -1.04 4.88 -104.96 -0.51 -1.55 16 19 C -0.07 -1.10 9.58 -39.94 -0.38 -1.48 16 20 C -0.11 -1.71 9.98 -39.47 -0.39 -2.10 16 21 C 0.12 2.07 6.60 -84.85 -0.56 1.51 16 22 N -0.48 -7.63 10.34 -10.97 -0.11 -7.74 16 23 C 0.12 1.60 11.15 -17.46 -0.19 1.40 16 24 C -0.19 -2.42 10.03 -39.77 -0.40 -2.81 16 25 C -0.05 -0.76 9.90 -39.22 -0.39 -1.14 16 26 C -0.10 -1.76 5.74 -106.80 -0.61 -2.37 16 27 C -0.08 -1.37 7.56 -39.51 -0.30 -1.67 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.03 0.81 6.06 -51.93 -0.31 0.49 16 30 H 0.03 0.72 5.07 -51.93 -0.26 0.45 16 31 H 0.09 1.75 6.08 -51.93 -0.32 1.43 16 32 H 0.07 1.12 7.80 -51.93 -0.41 0.72 16 33 H 0.15 2.96 8.06 -52.49 -0.42 2.53 16 34 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 35 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 36 H 0.06 1.23 6.58 -51.93 -0.34 0.88 16 37 H 0.07 1.00 7.80 -51.93 -0.40 0.60 16 38 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 39 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 42 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 43 H 0.14 2.85 7.74 -52.48 -0.41 2.44 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -30.04 355.55 -9.87 -39.91 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.32 Total: 8.66 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -4.87 Total: -23.34 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.45 Total: -43.42 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: 0.06 Total: -3.00 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.66 Total: 15.83 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.04 -9.87 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159578608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.701 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds