Wall clock time and date at job start Tue Mar 31 2020 13:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99745 * 2 1 4 4 H 1.48498 * 109.47297 * 270.00356 * 3 2 1 5 5 H 1.48497 * 109.46726 * 30.00313 * 3 2 1 6 6 H 1.48493 * 109.46958 * 150.00319 * 3 2 1 7 7 C 1.37878 * 120.00564 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99351 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00259 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.46719 * 184.21983 * 9 7 2 11 11 C 1.46897 * 111.00441 * 300.01958 * 10 9 7 12 12 C 1.50700 * 109.47050 * 287.70545 * 11 10 9 13 13 C 1.34511 * 125.79596 * 93.00679 * 12 11 10 14 14 C 1.41378 * 106.84513 * 179.97438 * 13 12 11 15 15 C 1.34516 * 106.84212 * 0.02562 * 14 13 12 16 16 O 1.34304 * 108.41678 * 359.73499 * 15 14 13 17 17 C 1.46895 * 111.00114 * 63.97948 * 10 9 7 18 18 C 1.50699 * 109.47507 * 66.04034 * 17 10 9 19 19 C 1.39358 * 119.56331 * 89.99736 * 18 17 10 20 20 C 1.36075 * 121.06616 * 180.02562 * 19 18 17 21 21 C 1.40601 * 119.74786 * 0.26070 * 20 19 18 22 22 N 1.33677 * 121.06878 * 180.36686 * 21 20 19 23 23 C 1.31085 * 121.32163 * 179.76387 * 22 21 20 24 24 C 1.39331 * 121.74683 * 359.63276 * 23 22 21 25 25 C 1.36587 * 119.93380 * 0.02562 * 24 23 22 26 26 C 1.40762 * 118.15304 * 359.97438 * 25 24 23 27 27 C 1.36137 * 119.56499 * 270.02163 * 18 17 10 28 28 H 0.96996 * 120.00396 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.46933 * 64.21776 * 9 7 2 30 30 H 1.09000 * 109.46487 * 304.22001 * 9 7 2 31 31 H 1.09001 * 109.46953 * 47.69846 * 11 10 9 32 32 H 1.08996 * 109.47313 * 167.70393 * 11 10 9 33 33 H 1.08000 * 126.57672 * 359.96477 * 13 12 11 34 34 H 1.08000 * 126.58023 * 179.97438 * 14 13 12 35 35 H 1.07992 * 125.79155 * 180.02562 * 15 14 13 36 36 H 1.09002 * 109.47238 * 306.03843 * 17 10 9 37 37 H 1.08998 * 109.47142 * 186.04287 * 17 10 9 38 38 H 1.08003 * 119.46713 * 0.02562 * 19 18 17 39 39 H 1.07997 * 120.12794 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.13084 * 179.65523 * 23 22 21 41 41 H 1.08003 * 120.03485 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.92076 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.19576 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0012 -2.5751 -0.1035 11 6 3.5303 -3.3859 1.0273 12 6 4.2671 -2.9799 2.2777 13 6 3.8535 -2.0647 3.1724 14 6 4.8428 -2.0008 4.1804 15 6 5.8022 -2.8806 3.8411 16 8 5.4455 -3.4746 2.6906 17 6 3.6090 -3.1791 -1.3838 18 6 4.3095 -2.4658 -2.5114 19 6 5.5552 -2.9182 -2.9426 20 6 6.2150 -2.2969 -3.9576 21 6 5.6386 -1.1767 -4.5820 22 7 6.2602 -0.5507 -5.5863 23 6 5.7252 0.4912 -6.1750 24 6 4.4834 0.9930 -5.7909 25 6 3.7915 0.3961 -4.7757 26 6 4.3692 -0.7225 -4.1461 27 6 3.7174 -1.3878 -3.0951 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.7471 0.9242 30 1 3.8745 -0.6157 -0.8509 31 1 2.4612 -3.2271 1.1679 32 1 3.7172 -4.4398 0.8215 33 1 2.9408 -1.4889 3.1291 34 1 4.8310 -1.3668 5.0546 35 1 6.7038 -3.0792 4.4014 36 1 2.5302 -3.0902 -1.5122 37 1 3.8899 -4.2323 -1.3899 38 1 6.0041 -3.7757 -2.4634 39 1 7.1799 -2.6600 -4.2793 40 1 6.2610 0.9734 -6.9792 41 1 4.0687 1.8535 -6.2948 42 1 2.8279 0.7720 -4.4648 43 1 2.7521 -1.0461 -2.7517 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159578608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:58 Heat of formation + Delta-G solvation = 63.115628 kcal Electronic energy + Delta-G solvation = -26641.441793 eV Core-core repulsion = 23038.685929 eV Total energy + Delta-G solvation = -3602.755864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.34261 -41.75394 -39.39682 -37.48536 -34.59396 -34.41226 -33.80837 -32.51643 -31.35155 -30.78909 -29.58161 -27.20561 -25.81830 -24.87559 -23.93250 -22.98094 -22.52462 -21.95498 -21.02967 -19.24560 -18.90497 -18.04450 -17.77094 -17.54700 -17.15564 -16.50083 -16.16776 -15.99389 -15.52602 -15.37279 -15.20782 -15.03708 -14.80946 -14.45942 -14.10907 -13.97385 -13.73265 -13.65087 -13.48308 -13.29709 -12.98879 -12.91810 -12.63288 -12.41991 -12.34302 -12.14888 -11.98528 -11.83130 -11.69159 -11.49561 -10.80965 -10.72407 -10.47190 -9.65462 -9.38426 -9.14556 -8.95705 -8.32776 -6.33880 -0.52534 -0.11456 0.90056 1.06925 1.24654 1.30119 1.39782 1.77829 2.01110 2.23125 2.28738 3.03464 3.12392 3.39828 3.47524 3.69230 3.84522 3.88395 3.98965 4.02375 4.16073 4.24329 4.28123 4.32027 4.44701 4.48341 4.55996 4.63468 4.75228 4.86959 4.91720 4.99775 5.03527 5.09491 5.11460 5.16026 5.17491 5.19059 5.33181 5.39880 5.44908 5.65074 5.69533 5.72710 5.95622 6.04485 6.25592 6.28418 6.38998 6.70843 6.94230 7.31883 8.82379 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011381 B = 0.004726 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.691080 B = 5922.764867 C = 7410.911933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.033 3.967 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.163 3.837 10 N -0.522 5.522 11 C 0.134 3.866 12 C 0.000 4.000 13 C -0.224 4.224 14 C -0.231 4.231 15 C -0.040 4.040 16 O -0.182 6.182 17 C 0.097 3.903 18 C -0.069 4.069 19 C -0.073 4.073 20 C -0.108 4.108 21 C 0.104 3.896 22 N -0.497 5.497 23 C 0.125 3.875 24 C -0.172 4.172 25 C -0.077 4.077 26 C -0.121 4.121 27 C -0.096 4.096 28 H 0.265 0.735 29 H 0.017 0.983 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.164 0.836 35 H 0.244 0.756 36 H 0.038 0.962 37 H 0.102 0.898 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.196 0.804 41 H 0.170 0.830 42 H 0.136 0.864 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.337 -3.338 -4.818 13.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.167 4.167 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.035 3.965 10 N -0.245 5.245 11 C 0.007 3.993 12 C -0.050 4.050 13 C -0.245 4.245 14 C -0.250 4.250 15 C -0.107 4.107 16 O -0.078 6.078 17 C -0.030 4.030 18 C -0.069 4.069 19 C -0.093 4.093 20 C -0.127 4.127 21 C -0.017 4.017 22 N -0.206 5.206 23 C -0.047 4.047 24 C -0.191 4.191 25 C -0.103 4.103 26 C -0.123 4.123 27 C -0.116 4.116 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.144 0.856 34 H 0.181 0.819 35 H 0.260 0.740 36 H 0.056 0.944 37 H 0.121 0.879 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.213 0.787 41 H 0.188 0.812 42 H 0.154 0.846 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.685 -3.866 -5.148 15.124 hybrid contribution -2.400 1.781 0.713 3.072 sum 11.285 -2.085 -4.435 12.303 Atomic orbital electron populations 1.70018 1.07654 1.27734 1.52321 1.25482 0.95022 1.01762 0.94400 0.86175 0.79534 0.80890 0.79286 1.18982 1.21101 1.18685 1.21696 0.91760 0.93300 1.50114 0.93095 1.20003 0.92382 0.87802 0.96285 1.62393 1.58473 1.02816 1.00820 1.20409 0.95604 0.97920 0.85360 1.22332 0.86152 0.98621 0.97928 1.21762 1.02753 1.02476 0.97476 1.22083 0.95844 1.04571 1.02473 1.24757 1.02004 0.96749 0.87196 1.83986 1.33377 1.54920 1.35564 1.21023 0.97411 0.97948 0.86622 1.19632 0.95430 0.95778 0.96101 1.21013 0.92988 1.00175 0.95143 1.20950 1.01024 0.94219 0.96465 1.19136 0.91342 0.96691 0.94493 1.68058 1.34878 1.09568 1.08090 1.23590 0.92774 0.90916 0.97436 1.22221 0.96483 1.02368 0.98013 1.21780 1.00152 0.93462 0.94901 1.19051 0.96448 0.98261 0.98503 1.21080 1.00131 0.95530 0.94866 0.92624 0.96445 0.95651 0.91873 0.87975 0.85631 0.81883 0.73995 0.94378 0.87937 0.82736 0.83031 0.78749 0.81223 0.84603 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.42 13.96 21.45 0.30 -55.12 16 2 C 0.03 1.79 5.47 84.66 0.46 2.26 16 3 Si 0.92 43.55 27.39 68.60 1.88 45.43 16 4 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.26 -12.37 6.67 99.48 0.66 -11.70 16 7 C -0.53 -27.79 7.70 25.60 0.20 -27.59 16 8 H 0.05 2.91 6.19 -2.91 -0.02 2.89 16 9 C 0.16 7.54 3.65 85.56 0.31 7.85 16 10 N -0.52 -20.35 4.64 -909.98 -4.23 -24.58 16 11 C 0.13 4.92 5.34 85.56 0.46 5.38 16 12 C 0.00 0.01 6.32 24.83 0.16 0.16 16 13 C -0.22 -8.49 9.78 22.19 0.22 -8.27 16 14 C -0.23 -6.93 10.91 22.19 0.24 -6.69 16 15 C -0.04 -1.04 12.09 66.97 0.81 -0.23 16 16 O -0.18 -5.95 10.65 -2.55 -0.03 -5.98 16 17 C 0.10 3.38 4.92 85.56 0.42 3.80 16 18 C -0.07 -2.37 4.88 -20.08 -0.10 -2.46 16 19 C -0.07 -2.11 9.58 22.04 0.21 -1.90 16 20 C -0.11 -3.13 9.98 22.34 0.22 -2.90 16 21 C 0.10 3.38 6.60 40.29 0.27 3.65 16 22 N -0.50 -14.70 10.34 -188.63 -1.95 -16.66 16 23 C 0.13 2.88 11.15 85.07 0.95 3.83 16 24 C -0.17 -3.94 10.03 22.15 0.22 -3.72 16 25 C -0.08 -2.32 9.90 22.50 0.22 -2.10 16 26 C -0.12 -4.19 5.74 -21.28 -0.12 -4.31 16 27 C -0.10 -3.64 7.56 22.31 0.17 -3.47 16 28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.02 0.87 6.06 -2.39 -0.01 0.85 16 30 H 0.03 1.22 5.07 -2.39 -0.01 1.21 16 31 H 0.06 2.64 6.08 -2.39 -0.01 2.62 16 32 H 0.10 3.07 7.80 -2.39 -0.02 3.06 16 33 H 0.13 5.28 8.06 -2.91 -0.02 5.26 16 34 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 35 H 0.24 3.63 8.06 -2.91 -0.02 3.61 16 36 H 0.04 1.53 6.58 -2.39 -0.02 1.51 16 37 H 0.10 2.85 7.80 -2.39 -0.02 2.83 16 38 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 40 H 0.20 2.71 8.06 -2.91 -0.02 2.69 16 41 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 43 H 0.11 4.88 7.74 -2.91 -0.02 4.86 16 Total: -1.00 -68.66 355.55 2.27 -66.39 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.98 Total: 27.23 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 5.32 Total: -36.72 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -5.88 Total: -96.36 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.03 Total: -5.98 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Total: -68.66 2.27 -66.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159578608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.502 kcal (2) G-P(sol) polarization free energy of solvation -68.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds