Wall clock time and date at job start Tue Mar 31 2020 13:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86797 * 120.00141 * 2 1 4 4 H 1.48504 * 109.47071 * 274.99489 * 3 2 1 5 5 H 1.48501 * 109.47345 * 34.99607 * 3 2 1 6 6 H 1.48497 * 109.47080 * 155.00093 * 3 2 1 7 7 C 1.39892 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00227 * 150.61871 * 7 2 1 9 9 C 1.41160 * 119.99959 * 330.61629 * 7 2 1 10 10 C 1.40862 * 120.16732 * 165.67902 * 9 7 2 11 11 C 1.36371 * 119.83188 * 180.02562 * 10 9 7 12 12 C 1.39473 * 120.17002 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83999 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99670 * 33.78285 * 13 12 11 15 15 O 1.21585 * 120.00039 * 5.13471 * 14 13 12 16 16 N 1.34776 * 120.00129 * 185.13918 * 14 13 12 17 17 C 1.47237 * 121.33874 * 175.30026 * 16 14 13 18 18 C 1.52782 * 107.89845 * 115.75674 * 17 16 14 19 19 C 1.50601 * 110.85476 * 47.47483 * 18 17 16 20 20 C 1.38987 * 117.61484 * 160.54903 * 19 18 17 21 21 C 1.37911 * 120.58150 * 179.55592 * 20 19 18 22 22 C 1.38268 * 119.82547 * 359.56994 * 21 20 19 23 23 C 1.37958 * 119.71400 * 0.45251 * 22 21 20 24 24 C 1.37671 * 122.86446 * 339.97907 * 19 18 17 25 25 C 1.46679 * 121.34003 * 355.32086 * 16 14 13 26 26 C 1.39485 * 120.33145 * 0.25761 * 12 11 10 27 27 C 1.36373 * 120.16808 * 359.43956 * 26 12 11 28 28 H 0.96998 * 119.99708 * 359.97438 * 1 2 3 29 29 H 1.08010 * 120.08184 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.91775 * 179.97438 * 11 10 9 31 31 H 0.96997 * 120.00191 * 213.78239 * 13 12 11 32 32 H 1.09000 * 109.77285 * 235.35517 * 17 16 14 33 33 H 1.08999 * 109.77307 * 356.15325 * 17 16 14 34 34 H 1.09004 * 109.20541 * 167.82959 * 18 17 16 35 35 H 1.09004 * 109.20285 * 287.17154 * 18 17 16 36 36 H 1.07996 * 119.70920 * 359.30600 * 20 19 18 37 37 H 1.07994 * 120.08625 * 179.84041 * 21 20 19 38 38 H 1.07996 * 120.14157 * 180.47032 * 22 21 20 39 39 H 1.08006 * 119.74333 * 179.82143 * 23 22 21 40 40 H 1.08996 * 109.43700 * 104.26033 * 25 16 14 41 41 H 1.09004 * 109.40050 * 344.37235 * 25 16 14 42 42 H 1.08008 * 119.91803 * 179.70576 * 26 12 11 43 43 H 1.08001 * 120.08957 * 180.26077 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4971 2.6199 0.8030 6 1 3.5892 1.4119 0.5917 7 6 2.0082 -1.2115 -0.0005 8 1 2.9840 -1.2715 -0.4594 9 6 1.4386 -2.3556 0.5988 10 6 1.9811 -3.6310 0.3470 11 6 1.4250 -4.7317 0.9292 12 6 0.3216 -4.5971 1.7716 13 7 -0.2411 -5.7257 2.3620 14 6 0.5435 -6.7625 2.7171 15 8 1.7514 -6.6759 2.6085 16 7 -0.0108 -7.8952 3.1925 17 6 0.8084 -9.0812 3.4928 18 6 0.7241 -9.3418 4.9958 19 6 -0.7044 -9.2893 5.4698 20 6 -1.0030 -9.8961 6.6840 21 6 -2.2895 -9.8767 7.1805 22 6 -3.2911 -9.2410 6.4703 23 6 -2.9977 -8.6383 5.2645 24 6 -1.7042 -8.6625 4.7607 25 6 -1.4545 -7.9963 3.4311 26 6 -0.2248 -3.3382 2.0210 27 6 0.3242 -2.2277 1.4510 28 1 -0.4849 0.8401 0.0004 29 1 2.8348 -3.7369 -0.3061 30 1 1.8396 -5.7103 0.7368 31 1 -1.1976 -5.7658 2.5177 32 1 0.4238 -9.9428 2.9470 33 1 1.8441 -8.8957 3.2080 34 1 1.1378 -10.3266 5.2128 35 1 1.3043 -8.5850 5.5240 36 1 -0.2215 -10.3906 7.2417 37 1 -2.5131 -10.3529 8.1236 38 1 -4.2988 -9.2161 6.8580 39 1 -3.7803 -8.1441 4.7080 40 1 -1.9128 -8.5867 2.6377 41 1 -1.8911 -6.9975 3.4382 42 1 -1.0823 -3.2423 2.6708 43 1 -0.0974 -1.2531 1.6483 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166851615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:01 Heat of formation + Delta-G solvation = 27.156159 kcal Electronic energy + Delta-G solvation = -25747.596389 eV Core-core repulsion = 22143.281206 eV Total energy + Delta-G solvation = -3604.315183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65888 -39.36070 -37.48047 -35.93503 -34.52690 -33.44159 -32.63178 -31.45848 -29.73788 -29.39664 -28.67979 -25.97862 -24.88389 -23.71150 -22.45674 -21.71744 -21.00431 -20.36736 -18.93463 -17.92535 -17.33223 -16.95288 -16.27946 -15.89612 -15.28188 -15.06337 -14.96280 -14.76468 -14.50215 -13.96728 -13.77372 -13.53456 -13.32173 -13.07957 -12.71426 -12.62570 -12.37590 -12.25656 -12.03209 -11.89997 -11.69335 -11.41887 -11.22799 -11.07610 -10.92923 -10.86542 -10.49886 -10.15984 -9.65088 -9.59318 -9.21811 -9.05116 -8.80298 -8.64446 -8.55100 -7.48698 -7.05190 -6.84455 -4.21839 1.10752 1.14121 2.67031 2.87499 3.05544 3.07488 3.16402 3.20973 3.49316 3.69687 3.90699 4.29309 4.42411 4.50710 4.57798 4.68218 4.78419 4.94976 5.04145 5.12872 5.19722 5.33316 5.38690 5.45880 5.71524 5.71831 5.76286 5.79227 5.95912 6.19200 6.24251 6.26814 6.35911 6.45850 6.49437 6.75405 6.84108 6.90900 7.03770 7.14181 7.32648 7.39072 7.63629 7.91084 8.01203 8.08789 8.30559 8.49130 8.61553 8.89966 8.94944 9.14582 10.05556 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.026071 B = 0.002479 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.724452 B =11291.214797 C =11889.323171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.082 3.918 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.104 3.896 10 C -0.225 4.225 11 C -0.069 4.069 12 C -0.001 4.001 13 N -0.664 5.664 14 C 0.702 3.298 15 O -0.575 6.575 16 N -0.636 5.636 17 C 0.132 3.868 18 C -0.100 4.100 19 C -0.064 4.064 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.094 4.094 25 C 0.153 3.847 26 C -0.108 4.108 27 C -0.172 4.172 28 H 0.282 0.718 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.389 0.611 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.507 -16.590 10.591 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.102 3.898 10 C -0.245 4.245 11 C -0.089 4.089 12 C -0.094 4.094 13 N -0.311 5.311 14 C 0.405 3.595 15 O -0.452 6.452 16 N -0.375 5.375 17 C 0.009 3.991 18 C -0.137 4.137 19 C -0.064 4.064 20 C -0.140 4.140 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.132 4.132 24 C -0.095 4.095 25 C 0.030 3.970 26 C -0.128 4.128 27 C -0.192 4.192 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.224 0.776 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.811 -16.361 10.450 20.574 hybrid contribution -0.423 0.712 0.285 0.876 sum -7.234 -15.649 10.735 20.309 Atomic orbital electron populations 1.69926 1.07961 1.29566 1.32338 1.25978 0.94476 1.01635 0.91726 0.86428 0.81344 0.80672 0.79138 1.19492 1.19918 1.18165 1.19553 1.03539 0.93174 1.32237 0.90184 1.17618 0.90741 0.91754 0.89733 1.20537 1.04462 0.92356 1.07115 1.20235 0.95533 0.97945 0.95186 1.16901 1.02684 0.84190 1.05577 1.42249 1.09226 1.16251 1.63329 1.15801 0.85442 0.79870 0.78423 1.90902 1.12202 1.81167 1.60955 1.47195 1.06960 1.13133 1.70200 1.21377 0.97620 0.86329 0.93808 1.20893 0.92895 1.02816 0.97143 1.19543 0.95210 0.97033 0.94600 1.21191 0.96864 1.00248 0.95663 1.21074 0.93191 0.99693 0.99853 1.21048 0.99339 0.98530 0.95247 1.21052 0.95707 0.99948 0.96459 1.19825 0.93555 0.99398 0.96697 1.20358 0.82335 1.00703 0.93642 1.20147 1.00110 0.91578 1.01001 1.20894 1.00079 0.97156 1.01059 0.90721 0.88862 0.88062 0.77649 0.91345 0.88158 0.89748 0.89921 0.86119 0.86149 0.85987 0.85789 0.90294 0.89439 0.89463 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.57 11.05 55.54 0.61 -18.96 16 2 C 0.08 2.05 4.97 -17.34 -0.09 1.96 16 3 Si 0.90 18.42 29.65 -169.99 -5.04 13.38 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.22 8.99 -37.85 -0.34 -12.56 16 8 H 0.08 2.07 7.99 -52.49 -0.42 1.65 16 9 C 0.10 2.84 5.65 -106.80 -0.60 2.24 16 10 C -0.22 -5.85 9.74 -39.26 -0.38 -6.23 16 11 C -0.07 -1.71 8.57 -39.79 -0.34 -2.05 16 12 C 0.00 -0.03 6.28 -83.57 -0.53 -0.55 16 13 N -0.66 -12.47 5.21 -14.10 -0.07 -12.54 16 14 C 0.70 13.19 8.05 -86.92 -0.70 12.49 16 15 O -0.58 -13.06 13.52 5.29 0.07 -12.99 16 16 N -0.64 -8.96 2.93 -180.13 -0.53 -9.48 16 17 C 0.13 1.56 6.43 -3.75 -0.02 1.54 16 18 C -0.10 -1.01 5.86 -28.04 -0.16 -1.18 16 19 C -0.06 -0.67 5.76 -104.60 -0.60 -1.28 16 20 C -0.12 -1.12 9.59 -39.42 -0.38 -1.50 16 21 C -0.12 -1.02 10.04 -39.69 -0.40 -1.41 16 22 C -0.12 -1.04 10.05 -39.67 -0.40 -1.44 16 23 C -0.11 -1.04 9.62 -39.46 -0.38 -1.42 16 24 C -0.09 -1.00 5.82 -104.56 -0.61 -1.60 16 25 C 0.15 1.67 6.08 -5.04 -0.03 1.64 16 26 C -0.11 -2.54 9.89 -39.79 -0.39 -2.93 16 27 C -0.17 -4.50 8.77 -39.26 -0.34 -4.84 16 28 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 29 H 0.09 2.30 8.06 -52.48 -0.42 1.88 16 30 H 0.10 2.49 6.42 -52.48 -0.34 2.16 16 31 H 0.39 5.93 6.46 -40.82 -0.26 5.66 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.34 7.09 -51.93 -0.37 0.97 16 34 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.12 0.89 8.05 -52.49 -0.42 0.47 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.89 8.05 -52.48 -0.42 0.47 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.90 5.95 -51.93 -0.31 0.59 16 42 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 43 H 0.12 3.22 5.87 -52.49 -0.31 2.91 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -31.47 352.81 -11.71 -43.17 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.37 Total: 11.24 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -6.70 Total: -19.13 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.01 Total: -40.98 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.04 Total: 13.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.47 -11.71 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166851615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.330 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds