Wall clock time and date at job start Tue Mar 31 2020 13:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86797 * 120.00141 * 2 1 4 4 H 1.48504 * 109.47071 * 274.99489 * 3 2 1 5 5 H 1.48501 * 109.47345 * 34.99607 * 3 2 1 6 6 H 1.48497 * 109.47080 * 155.00093 * 3 2 1 7 7 C 1.39892 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00227 * 150.61871 * 7 2 1 9 9 C 1.41160 * 119.99959 * 330.61629 * 7 2 1 10 10 C 1.40862 * 120.16732 * 165.67902 * 9 7 2 11 11 C 1.36371 * 119.83188 * 180.02562 * 10 9 7 12 12 C 1.39473 * 120.17002 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83999 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99670 * 33.78285 * 13 12 11 15 15 O 1.21585 * 120.00039 * 5.13471 * 14 13 12 16 16 N 1.34776 * 120.00129 * 185.13918 * 14 13 12 17 17 C 1.47237 * 121.33874 * 175.30026 * 16 14 13 18 18 C 1.52782 * 107.89845 * 115.75674 * 17 16 14 19 19 C 1.50601 * 110.85476 * 47.47483 * 18 17 16 20 20 C 1.38987 * 117.61484 * 160.54903 * 19 18 17 21 21 C 1.37911 * 120.58150 * 179.55592 * 20 19 18 22 22 C 1.38268 * 119.82547 * 359.56994 * 21 20 19 23 23 C 1.37958 * 119.71400 * 0.45251 * 22 21 20 24 24 C 1.37671 * 122.86446 * 339.97907 * 19 18 17 25 25 C 1.46679 * 121.34003 * 355.32086 * 16 14 13 26 26 C 1.39485 * 120.33145 * 0.25761 * 12 11 10 27 27 C 1.36373 * 120.16808 * 359.43956 * 26 12 11 28 28 H 0.96998 * 119.99708 * 359.97438 * 1 2 3 29 29 H 1.08010 * 120.08184 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.91775 * 179.97438 * 11 10 9 31 31 H 0.96997 * 120.00191 * 213.78239 * 13 12 11 32 32 H 1.09000 * 109.77285 * 235.35517 * 17 16 14 33 33 H 1.08999 * 109.77307 * 356.15325 * 17 16 14 34 34 H 1.09004 * 109.20541 * 167.82959 * 18 17 16 35 35 H 1.09004 * 109.20285 * 287.17154 * 18 17 16 36 36 H 1.07996 * 119.70920 * 359.30600 * 20 19 18 37 37 H 1.07994 * 120.08625 * 179.84041 * 21 20 19 38 38 H 1.07996 * 120.14157 * 180.47032 * 22 21 20 39 39 H 1.08006 * 119.74333 * 179.82143 * 23 22 21 40 40 H 1.08996 * 109.43700 * 104.26033 * 25 16 14 41 41 H 1.09004 * 109.40050 * 344.37235 * 25 16 14 42 42 H 1.08008 * 119.91803 * 179.70576 * 26 12 11 43 43 H 1.08001 * 120.08957 * 180.26077 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4971 2.6199 0.8030 6 1 3.5892 1.4119 0.5917 7 6 2.0082 -1.2115 -0.0005 8 1 2.9840 -1.2715 -0.4594 9 6 1.4386 -2.3556 0.5988 10 6 1.9811 -3.6310 0.3470 11 6 1.4250 -4.7317 0.9292 12 6 0.3216 -4.5971 1.7716 13 7 -0.2411 -5.7257 2.3620 14 6 0.5435 -6.7625 2.7171 15 8 1.7514 -6.6759 2.6085 16 7 -0.0108 -7.8952 3.1925 17 6 0.8084 -9.0812 3.4928 18 6 0.7241 -9.3418 4.9958 19 6 -0.7044 -9.2893 5.4698 20 6 -1.0030 -9.8961 6.6840 21 6 -2.2895 -9.8767 7.1805 22 6 -3.2911 -9.2410 6.4703 23 6 -2.9977 -8.6383 5.2645 24 6 -1.7042 -8.6625 4.7607 25 6 -1.4545 -7.9963 3.4311 26 6 -0.2248 -3.3382 2.0210 27 6 0.3242 -2.2277 1.4510 28 1 -0.4849 0.8401 0.0004 29 1 2.8348 -3.7369 -0.3061 30 1 1.8396 -5.7103 0.7368 31 1 -1.1976 -5.7658 2.5177 32 1 0.4238 -9.9428 2.9470 33 1 1.8441 -8.8957 3.2080 34 1 1.1378 -10.3266 5.2128 35 1 1.3043 -8.5850 5.5240 36 1 -0.2215 -10.3906 7.2417 37 1 -2.5131 -10.3529 8.1236 38 1 -4.2988 -9.2161 6.8580 39 1 -3.7803 -8.1441 4.7080 40 1 -1.9128 -8.5867 2.6377 41 1 -1.8911 -6.9975 3.4382 42 1 -1.0823 -3.2423 2.6708 43 1 -0.0974 -1.2531 1.6483 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166851615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:00 Heat of formation + Delta-G solvation = 11.291175 kcal Electronic energy + Delta-G solvation = -25748.284346 eV Core-core repulsion = 22143.281206 eV Total energy + Delta-G solvation = -3605.003141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.83682 -40.48118 -39.18466 -37.11003 -36.24336 -34.96273 -33.76707 -32.34661 -31.45615 -30.86979 -30.08067 -27.22599 -26.34778 -24.74743 -23.40111 -23.17019 -22.61349 -21.80357 -20.26044 -19.31810 -19.10721 -18.18583 -17.41201 -17.03805 -16.89451 -16.19239 -16.01759 -15.85922 -15.71539 -15.51298 -14.96520 -14.85656 -14.51148 -14.30942 -14.05231 -13.97884 -13.73115 -13.60388 -13.31373 -13.15539 -13.05386 -12.77236 -12.67974 -12.45453 -12.33282 -11.99005 -11.88304 -11.67804 -11.52818 -11.31947 -11.01227 -10.49264 -9.88116 -9.59543 -9.49952 -9.45310 -8.93239 -8.70638 -6.20154 0.41627 0.47090 0.86781 1.16659 1.38634 1.45821 1.56020 1.64020 2.14155 2.20813 2.69058 2.80619 3.01006 3.62705 3.74711 3.76452 3.94833 4.07942 4.20997 4.27941 4.31503 4.39343 4.47270 4.50880 4.58955 4.65565 4.74998 4.81807 4.90965 4.94692 5.08924 5.11447 5.17275 5.19592 5.27848 5.44229 5.46945 5.58170 5.59891 5.64280 5.66393 5.79762 6.04956 6.09830 6.13695 6.18091 6.37080 6.64744 6.91782 6.99511 7.02073 7.61091 8.21894 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.026071 B = 0.002479 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.724452 B =11291.214797 C =11889.323171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.045 3.955 3 Si 0.977 3.023 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.495 4.495 8 H 0.074 0.926 9 C 0.075 3.925 10 C -0.245 4.245 11 C -0.079 4.079 12 C 0.011 3.989 13 N -0.658 5.658 14 C 0.699 3.301 15 O -0.621 6.621 16 N -0.627 5.627 17 C 0.127 3.873 18 C -0.091 4.091 19 C -0.084 4.084 20 C -0.129 4.129 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.110 4.110 25 C 0.150 3.850 26 C -0.106 4.106 27 C -0.191 4.191 28 H 0.294 0.706 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.408 0.592 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.120 0.880 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 -17.279 12.123 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.173 4.173 3 Si 0.797 3.203 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.523 4.523 8 H 0.092 0.908 9 C 0.073 3.927 10 C -0.265 4.265 11 C -0.099 4.099 12 C -0.082 4.082 13 N -0.307 5.307 14 C 0.401 3.599 15 O -0.501 6.501 16 N -0.365 5.365 17 C 0.004 3.996 18 C -0.129 4.129 19 C -0.084 4.084 20 C -0.147 4.147 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.111 4.111 25 C 0.027 3.973 26 C -0.126 4.126 27 C -0.211 4.211 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.246 0.754 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.138 0.862 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.806 -17.113 12.005 22.683 hybrid contribution 0.075 0.740 -0.115 0.752 sum -8.731 -16.373 11.890 22.038 Atomic orbital electron populations 1.69919 1.09196 1.31243 1.31912 1.26786 0.95273 1.04568 0.90697 0.85288 0.79426 0.75949 0.79668 1.18333 1.18430 1.18709 1.19764 1.03869 0.94628 1.34048 0.90780 1.17940 0.91727 0.92325 0.90742 1.20663 1.05088 0.92772 1.08027 1.20318 0.96385 0.97384 0.95793 1.16929 1.01581 0.85543 1.04181 1.42035 1.10245 1.15239 1.63142 1.15965 0.84855 0.80695 0.78353 1.90873 1.14296 1.82188 1.62791 1.47212 1.08754 1.11967 1.68521 1.21580 0.96423 0.86038 0.95530 1.20812 0.93153 1.03616 0.95342 1.19667 0.95078 0.98105 0.95572 1.21417 0.97853 1.00123 0.95322 1.21419 0.92847 0.99255 1.00635 1.21398 1.00504 0.97733 0.94881 1.21293 0.95520 0.99978 0.96943 1.19868 0.94443 1.00165 0.96640 1.20602 0.80045 1.01652 0.94958 1.20395 1.00682 0.90881 1.00651 1.20929 1.00501 0.97756 1.01941 0.89511 0.88991 0.88345 0.75379 0.88875 0.90219 0.87144 0.91880 0.84641 0.83955 0.83763 0.84007 0.88238 0.88876 0.86217 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.63 11.05 21.82 0.24 -40.39 16 2 C 0.05 2.28 4.97 85.24 0.42 2.70 16 3 Si 0.98 37.81 29.65 68.60 2.03 39.84 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.50 -27.44 8.99 23.39 0.21 -27.23 16 8 H 0.07 4.02 7.99 -2.91 -0.02 4.00 16 9 C 0.08 4.26 5.65 -21.27 -0.12 4.14 16 10 C -0.25 -13.37 9.74 22.48 0.22 -13.15 16 11 C -0.08 -4.02 8.57 22.13 0.19 -3.83 16 12 C 0.01 0.53 6.28 38.56 0.24 0.77 16 13 N -0.66 -24.19 5.21 -316.79 -1.65 -25.85 16 14 C 0.70 26.17 8.05 179.06 1.44 27.61 16 15 O -0.62 -28.91 13.52 -3.98 -0.05 -28.97 16 16 N -0.63 -17.07 2.93 -842.07 -2.47 -19.54 16 17 C 0.13 2.91 6.43 86.17 0.55 3.46 16 18 C -0.09 -1.76 5.86 29.74 0.17 -1.59 16 19 C -0.08 -1.62 5.76 -19.85 -0.11 -1.74 16 20 C -0.13 -2.08 9.59 22.37 0.21 -1.86 16 21 C -0.12 -1.72 10.04 22.20 0.22 -1.50 16 22 C -0.13 -1.75 10.05 22.21 0.22 -1.53 16 23 C -0.12 -1.84 9.62 22.35 0.21 -1.63 16 24 C -0.11 -2.10 5.82 -19.82 -0.12 -2.21 16 25 C 0.15 2.95 6.08 85.63 0.52 3.48 16 26 C -0.11 -4.95 9.89 22.14 0.22 -4.73 16 27 C -0.19 -10.20 8.77 22.48 0.20 -10.00 16 28 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 29 H 0.09 4.83 8.06 -2.91 -0.02 4.81 16 30 H 0.10 5.04 6.42 -2.91 -0.02 5.02 16 31 H 0.41 11.69 6.46 -92.71 -0.60 11.09 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 2.17 7.09 -2.39 -0.02 2.16 16 34 H 0.11 1.50 8.11 -2.38 -0.02 1.48 16 35 H 0.06 1.45 8.14 -2.38 -0.02 1.44 16 36 H 0.14 1.66 8.05 -2.91 -0.02 1.64 16 37 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.14 1.58 8.05 -2.91 -0.02 1.56 16 40 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.09 1.70 5.95 -2.39 -0.01 1.68 16 42 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 43 H 0.11 6.16 5.87 -2.91 -0.02 6.14 16 Total: -1.00 -70.41 352.81 3.46 -66.95 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.44 Total: 36.78 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 4.92 Total: -28.83 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -3.88 Total: -85.78 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.05 Total: -28.97 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -70.41 3.46 -66.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166851615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.246 kcal (2) G-P(sol) polarization free energy of solvation -70.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds