Wall clock time and date at job start Tue Mar 31 2020 13:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00505 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47554 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47321 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00065 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99923 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27942 * 15 13 12 17 17 H 1.08999 * 109.43786 * 34.62964 * 16 15 13 18 18 C 1.53069 * 109.43327 * 154.50001 * 16 15 13 19 19 C 1.53420 * 108.29696 * 168.23585 * 18 16 15 20 20 O 1.42826 * 108.35638 * 295.24085 * 19 18 16 21 21 C 1.35903 * 117.84637 * 49.21449 * 20 19 18 22 22 C 1.39129 * 118.46545 * 162.92198 * 21 20 19 23 23 C 1.37963 * 120.25186 * 179.74353 * 22 21 20 24 24 C 1.38476 * 119.93281 * 0.02562 * 23 22 21 25 25 F 1.35099 * 120.03983 * 180.02562 * 24 23 22 26 26 C 1.38290 * 119.92858 * 0.09233 * 24 23 22 27 27 C 1.38359 * 121.79826 * 342.83477 * 21 20 19 28 28 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46940 * 59.99282 * 9 7 2 30 30 H 1.08998 * 109.46562 * 300.00246 * 9 7 2 31 31 H 1.09000 * 109.47686 * 59.99613 * 10 9 7 32 32 H 1.09007 * 109.47129 * 299.99403 * 10 9 7 33 33 H 1.09000 * 109.47211 * 59.99132 * 11 10 9 34 34 H 1.09006 * 109.46815 * 299.99368 * 11 10 9 35 35 H 0.97000 * 120.00386 * 359.97438 * 12 11 10 36 36 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 37 37 H 1.09003 * 109.69673 * 287.92512 * 18 16 15 38 38 H 1.08991 * 109.69924 * 48.52660 * 18 16 15 39 39 H 1.08995 * 109.68619 * 175.52605 * 19 18 16 40 40 H 1.09000 * 109.71795 * 54.97529 * 19 18 16 41 41 H 1.08006 * 119.87006 * 359.77137 * 22 21 20 42 42 H 1.08007 * 120.03659 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.84992 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0001 12 7 6.0400 -4.0176 -0.0009 13 6 7.3651 -4.2639 -0.0005 14 8 8.1552 -3.3397 0.0009 15 7 7.8144 -5.5346 -0.0017 16 6 9.2547 -5.8022 0.0048 17 1 9.7628 -5.0385 0.5936 18 6 9.5142 -7.1779 0.6238 19 6 10.9753 -7.5598 0.3534 20 8 11.1479 -7.7081 -1.0566 21 6 10.6865 -6.7144 -1.8606 22 6 11.1490 -6.6532 -3.1714 23 6 10.7010 -5.6629 -4.0210 24 6 9.7879 -4.7253 -3.5687 25 9 9.3473 -3.7550 -4.3991 26 6 9.3284 -4.7824 -2.2656 27 6 9.7764 -5.7749 -1.4095 28 1 -0.4850 0.8400 0.0004 29 1 3.8745 -0.6807 0.8905 30 1 3.8752 -0.6796 -0.8894 31 1 3.6586 -3.1494 -0.8920 32 1 3.6580 -3.1513 0.8880 33 1 5.9143 -2.1236 0.8907 34 1 5.9156 -2.1215 -0.8893 35 1 5.4097 -4.7550 -0.0016 36 1 7.1840 -6.2719 -0.0025 37 1 9.3385 -7.1361 1.6988 38 1 8.8518 -7.9154 0.1710 39 1 11.2074 -8.5005 0.8527 40 1 11.6351 -6.7751 0.7236 41 1 11.8612 -7.3841 -3.5251 42 1 11.0627 -5.6185 -5.0378 43 1 8.6166 -4.0502 -1.9140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171741201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:07 Heat of formation + Delta-G solvation = -95.570679 kcal Electronic energy + Delta-G solvation = -26593.857422 eV Core-core repulsion = 22553.451178 eV Total energy + Delta-G solvation = -4040.406243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.91937 -41.35845 -39.82396 -37.63039 -36.31432 -35.24718 -33.43538 -32.35013 -31.23137 -30.98610 -30.07389 -27.26763 -25.51250 -24.15852 -23.17362 -22.60520 -21.04380 -20.68043 -20.34846 -18.51420 -18.08558 -17.60661 -17.34710 -16.85026 -16.42652 -15.78861 -15.70501 -15.50405 -15.14187 -14.75521 -14.63008 -14.42561 -14.23332 -13.95272 -13.72990 -13.55500 -13.33286 -13.17152 -12.70343 -12.36577 -12.18539 -11.94561 -11.88436 -11.59248 -11.27000 -11.09280 -10.98613 -10.89995 -10.38515 -10.04006 -9.85391 -9.70510 -9.48832 -9.26209 -9.23743 -8.81104 -8.56008 -8.37047 -6.06927 -4.05768 0.79859 0.95401 2.53845 2.83974 3.11722 3.30283 3.31576 3.39023 3.43276 3.92227 4.11022 4.15456 4.25020 4.28140 4.44169 4.54295 4.63439 4.81294 4.89438 5.00114 5.07052 5.15614 5.27264 5.39006 5.43411 5.52594 5.57930 5.65549 5.82960 5.90452 5.98956 6.00355 6.23049 6.32241 6.43764 6.43860 6.62182 6.78193 6.87773 6.99504 7.22058 7.35387 7.74854 7.95489 8.48925 8.54182 8.96712 9.55337 11.06291 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002498 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.663685 B =11207.995088 C =12174.868567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.132 3.868 12 N -0.738 5.738 13 C 0.700 3.300 14 O -0.588 6.588 15 N -0.742 5.742 16 C 0.210 3.790 17 H 0.106 0.894 18 C -0.167 4.167 19 C 0.066 3.934 20 O -0.313 6.313 21 C 0.127 3.873 22 C -0.127 4.127 23 C -0.117 4.117 24 C 0.063 3.937 25 F -0.139 7.139 26 C -0.099 4.099 27 C -0.150 4.150 28 H 0.263 0.737 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.398 0.602 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.070 0.930 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.635 -19.473 -1.404 31.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.008 3.992 12 N -0.392 5.392 13 C 0.400 3.600 14 O -0.467 6.467 15 N -0.398 5.398 16 C 0.104 3.896 17 H 0.123 0.877 18 C -0.205 4.205 19 C -0.010 4.010 20 O -0.228 6.228 21 C 0.081 3.919 22 C -0.146 4.146 23 C -0.136 4.136 24 C 0.043 3.957 25 F -0.117 7.117 26 C -0.117 4.117 27 C -0.152 4.152 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.230 0.770 36 H 0.233 0.767 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 25.249 -18.587 -1.462 31.387 hybrid contribution -0.561 0.584 -0.078 0.813 sum 24.687 -18.004 -1.539 30.594 Atomic orbital electron populations 1.69910 1.06324 1.26977 1.51000 1.25027 0.94749 0.99251 0.94446 0.86777 0.80401 0.83502 0.78634 1.20210 1.21378 1.18866 1.21088 0.89299 0.94500 1.51125 0.91029 1.19497 0.97262 0.91412 0.96710 1.21708 0.90583 1.01072 1.01720 1.21560 0.95820 0.79828 1.01946 1.45361 1.04656 1.10311 1.78897 1.16022 0.83202 0.83011 0.77735 1.90940 1.54923 1.43028 1.57792 1.45136 1.06781 1.06737 1.81143 1.19448 0.81072 0.97550 0.91538 0.87669 1.22527 0.98206 0.96574 1.03183 1.22980 0.95331 1.03697 0.78972 1.86013 1.77225 1.41508 1.18011 1.18671 0.93827 0.88356 0.91006 1.20368 1.02511 1.00270 0.91424 1.20956 0.97388 0.94381 1.00860 1.17588 0.99413 0.89696 0.88962 1.91514 1.88313 1.60937 1.70980 1.21338 1.00324 0.98652 0.91426 1.20083 1.00100 0.97269 0.97755 0.92686 0.96279 0.96696 0.92119 0.92117 0.91819 0.91854 0.77010 0.76732 0.88585 0.89554 0.86694 0.91148 0.84185 0.84128 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 10 C -0.11 -2.07 5.27 -26.73 -0.14 -2.21 16 11 C 0.13 2.14 5.67 -4.04 -0.02 2.12 16 12 N -0.74 -9.66 5.56 -65.22 -0.36 -10.03 16 13 C 0.70 9.50 7.14 -86.92 -0.62 8.88 16 14 O -0.59 -10.26 14.28 5.28 0.08 -10.18 16 15 N -0.74 -7.07 4.86 -59.74 -0.29 -7.36 16 16 C 0.21 1.89 2.70 -69.01 -0.19 1.70 16 17 H 0.11 1.10 7.57 -51.93 -0.39 0.71 16 18 C -0.17 -0.89 5.67 -26.48 -0.15 -1.04 16 19 C 0.07 0.34 7.03 37.38 0.26 0.60 16 20 O -0.31 -2.57 10.27 -19.43 -0.20 -2.77 16 21 C 0.13 1.22 6.47 -39.21 -0.25 0.97 16 22 C -0.13 -1.13 9.93 -39.35 -0.39 -1.52 16 23 C -0.12 -1.13 10.02 -39.59 -0.40 -1.52 16 24 C 0.06 0.78 7.30 -39.47 -0.29 0.49 16 25 F -0.14 -1.94 17.27 2.25 0.04 -1.91 16 26 C -0.10 -1.28 9.06 -39.46 -0.36 -1.64 16 27 C -0.15 -1.60 5.56 -104.44 -0.58 -2.18 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 30 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 4.09 8.49 -40.82 -0.35 3.74 16 36 H 0.40 2.69 8.59 -40.82 -0.35 2.34 16 37 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.43 8.11 -51.93 -0.42 0.01 16 39 H 0.12 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 42 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.15 2.29 4.72 -52.49 -0.25 2.04 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -34.36 357.06 -8.84 -43.20 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.92 Total: 2.41 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.67 Total: -8.87 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.12 Total: -44.37 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.12 Total: -12.95 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.36 -8.84 -43.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171741201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.371 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds