Wall clock time and date at job start Tue Mar 31 2020 13:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00505 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47554 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47321 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00065 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99923 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27942 * 15 13 12 17 17 H 1.08999 * 109.43786 * 34.62964 * 16 15 13 18 18 C 1.53069 * 109.43327 * 154.50001 * 16 15 13 19 19 C 1.53420 * 108.29696 * 168.23585 * 18 16 15 20 20 O 1.42826 * 108.35638 * 295.24085 * 19 18 16 21 21 C 1.35903 * 117.84637 * 49.21449 * 20 19 18 22 22 C 1.39129 * 118.46545 * 162.92198 * 21 20 19 23 23 C 1.37963 * 120.25186 * 179.74353 * 22 21 20 24 24 C 1.38476 * 119.93281 * 0.02562 * 23 22 21 25 25 F 1.35099 * 120.03983 * 180.02562 * 24 23 22 26 26 C 1.38290 * 119.92858 * 0.09233 * 24 23 22 27 27 C 1.38359 * 121.79826 * 342.83477 * 21 20 19 28 28 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46940 * 59.99282 * 9 7 2 30 30 H 1.08998 * 109.46562 * 300.00246 * 9 7 2 31 31 H 1.09000 * 109.47686 * 59.99613 * 10 9 7 32 32 H 1.09007 * 109.47129 * 299.99403 * 10 9 7 33 33 H 1.09000 * 109.47211 * 59.99132 * 11 10 9 34 34 H 1.09006 * 109.46815 * 299.99368 * 11 10 9 35 35 H 0.97000 * 120.00386 * 359.97438 * 12 11 10 36 36 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 37 37 H 1.09003 * 109.69673 * 287.92512 * 18 16 15 38 38 H 1.08991 * 109.69924 * 48.52660 * 18 16 15 39 39 H 1.08995 * 109.68619 * 175.52605 * 19 18 16 40 40 H 1.09000 * 109.71795 * 54.97529 * 19 18 16 41 41 H 1.08006 * 119.87006 * 359.77137 * 22 21 20 42 42 H 1.08007 * 120.03659 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.84992 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0001 12 7 6.0400 -4.0176 -0.0009 13 6 7.3651 -4.2639 -0.0005 14 8 8.1552 -3.3397 0.0009 15 7 7.8144 -5.5346 -0.0017 16 6 9.2547 -5.8022 0.0048 17 1 9.7628 -5.0385 0.5936 18 6 9.5142 -7.1779 0.6238 19 6 10.9753 -7.5598 0.3534 20 8 11.1479 -7.7081 -1.0566 21 6 10.6865 -6.7144 -1.8606 22 6 11.1490 -6.6532 -3.1714 23 6 10.7010 -5.6629 -4.0210 24 6 9.7879 -4.7253 -3.5687 25 9 9.3473 -3.7550 -4.3991 26 6 9.3284 -4.7824 -2.2656 27 6 9.7764 -5.7749 -1.4095 28 1 -0.4850 0.8400 0.0004 29 1 3.8745 -0.6807 0.8905 30 1 3.8752 -0.6796 -0.8894 31 1 3.6586 -3.1494 -0.8920 32 1 3.6580 -3.1513 0.8880 33 1 5.9143 -2.1236 0.8907 34 1 5.9156 -2.1215 -0.8893 35 1 5.4097 -4.7550 -0.0016 36 1 7.1840 -6.2719 -0.0025 37 1 9.3385 -7.1361 1.6988 38 1 8.8518 -7.9154 0.1710 39 1 11.2074 -8.5005 0.8527 40 1 11.6351 -6.7751 0.7236 41 1 11.8612 -7.3841 -3.5251 42 1 11.0627 -5.6185 -5.0378 43 1 8.6166 -4.0502 -1.9140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171741201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:06 Heat of formation + Delta-G solvation = -119.862967 kcal Electronic energy + Delta-G solvation = -26594.910814 eV Core-core repulsion = 22553.451178 eV Total energy + Delta-G solvation = -4041.459636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.90121 -42.10834 -40.80830 -38.33429 -37.38976 -36.44462 -35.18020 -33.66150 -32.55384 -31.71332 -30.87416 -28.90864 -26.34974 -24.81130 -24.57586 -23.63741 -22.28677 -21.86217 -21.35564 -19.51753 -18.93758 -18.87861 -18.35693 -18.10168 -17.45481 -16.84687 -16.69717 -16.38264 -16.23718 -15.98781 -15.67156 -15.55501 -15.38651 -15.12608 -14.77590 -14.55952 -14.30315 -14.07275 -13.92262 -13.81200 -13.64692 -12.96488 -12.77021 -12.73372 -12.63487 -12.32697 -11.95401 -11.80922 -11.76524 -11.67426 -11.60600 -11.35191 -11.30493 -10.77051 -10.46704 -10.08419 -9.89001 -9.14564 -8.30307 -6.34046 0.02499 0.12829 1.36359 1.37549 1.49450 1.60404 2.05164 2.24350 2.35519 2.51500 3.05542 3.16572 3.24636 3.51907 3.54752 3.66354 3.93102 4.05951 4.07519 4.14275 4.20400 4.29960 4.40189 4.49007 4.50609 4.65997 4.81353 4.87461 4.88520 4.88861 4.98504 5.02861 5.08995 5.11365 5.19015 5.38612 5.42554 5.49978 5.55085 5.63714 5.64314 5.94021 6.26582 6.34480 6.73892 7.02990 7.30845 7.50415 8.86093 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002498 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.663685 B =11207.995088 C =12174.868567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.012 4.012 10 C -0.099 4.099 11 C 0.147 3.853 12 N -0.731 5.731 13 C 0.699 3.301 14 O -0.629 6.629 15 N -0.724 5.724 16 C 0.206 3.794 17 H 0.088 0.912 18 C -0.156 4.156 19 C 0.059 3.941 20 O -0.316 6.316 21 C 0.132 3.868 22 C -0.123 4.123 23 C -0.109 4.109 24 C 0.032 3.968 25 F -0.156 7.156 26 C -0.120 4.120 27 C -0.157 4.157 28 H 0.266 0.734 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.411 0.589 36 H 0.414 0.586 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.149 0.851 40 H 0.074 0.926 41 H 0.169 0.831 42 H 0.165 0.835 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.156 -21.464 -0.915 34.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.050 4.050 10 C -0.137 4.137 11 C 0.022 3.978 12 N -0.387 5.387 13 C 0.399 3.601 14 O -0.510 6.510 15 N -0.380 5.380 16 C 0.101 3.899 17 H 0.105 0.895 18 C -0.194 4.194 19 C -0.016 4.016 20 O -0.230 6.230 21 C 0.086 3.914 22 C -0.141 4.141 23 C -0.128 4.128 24 C 0.013 3.987 25 F -0.135 7.135 26 C -0.140 4.140 27 C -0.159 4.159 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.248 0.752 36 H 0.251 0.749 37 H 0.136 0.864 38 H 0.114 0.886 39 H 0.166 0.834 40 H 0.092 0.908 41 H 0.187 0.813 42 H 0.182 0.818 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 27.772 -20.655 -0.963 34.624 hybrid contribution -1.331 1.066 -0.207 1.718 sum 26.441 -19.589 -1.169 32.927 Atomic orbital electron populations 1.70052 1.08183 1.28132 1.52721 1.25969 0.95585 1.03387 0.94242 0.85717 0.79569 0.78611 0.79137 1.19413 1.20937 1.17097 1.21457 0.91858 0.93272 1.50197 0.94338 1.19461 0.94102 0.94682 0.96778 1.21467 0.91921 0.98088 1.02182 1.21144 0.94071 0.81455 1.01111 1.45063 1.05055 1.09586 1.78957 1.16136 0.82744 0.83810 0.77402 1.90913 1.55903 1.44706 1.59521 1.44960 1.07644 1.05702 1.79671 1.19616 0.80084 0.99432 0.90810 0.89456 1.22523 0.98658 0.93974 1.04202 1.23328 0.95113 1.05696 0.77446 1.86026 1.76810 1.40667 1.19457 1.18790 0.93002 0.87968 0.91627 1.20745 1.02238 1.00160 0.90971 1.21211 0.96051 0.93396 1.02106 1.17925 1.01163 0.90647 0.88961 1.91458 1.88777 1.61867 1.71421 1.21222 1.01085 0.99273 0.92379 1.20201 1.00580 0.97039 0.98114 0.92496 0.95979 0.96426 0.91886 0.91470 0.92444 0.93059 0.75238 0.74853 0.86445 0.88576 0.83373 0.90769 0.81308 0.81752 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.01 0.30 5.47 84.65 0.46 0.76 16 3 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 7 C -0.53 -30.23 9.66 25.60 0.25 -29.98 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 9 C -0.01 -0.56 4.04 29.84 0.12 -0.44 16 10 C -0.10 -3.57 5.27 30.59 0.16 -3.40 16 11 C 0.15 4.72 5.67 86.38 0.49 5.21 16 12 N -0.73 -18.69 5.56 -478.52 -2.66 -21.35 16 13 C 0.70 18.88 7.14 179.05 1.28 20.16 16 14 O -0.63 -22.51 14.28 -4.01 -0.06 -22.56 16 15 N -0.72 -13.03 4.86 -461.18 -2.24 -15.27 16 16 C 0.21 3.47 2.70 44.29 0.12 3.59 16 17 H 0.09 1.81 7.57 -2.39 -0.02 1.79 16 18 C -0.16 -1.18 5.67 30.76 0.17 -1.00 16 19 C 0.06 0.40 7.03 72.12 0.51 0.90 16 20 O -0.32 -4.15 10.27 -92.46 -0.95 -5.10 16 21 C 0.13 2.27 6.47 22.51 0.15 2.42 16 22 C -0.12 -1.88 9.93 22.42 0.22 -1.66 16 23 C -0.11 -1.96 10.02 22.26 0.22 -1.74 16 24 C 0.03 0.82 7.30 22.34 0.16 0.98 16 25 F -0.16 -4.60 17.27 44.97 0.78 -3.83 16 26 C -0.12 -3.23 9.06 22.35 0.20 -3.03 16 27 C -0.16 -3.24 5.56 -19.75 -0.11 -3.35 16 28 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 30 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.41 7.94 8.49 -92.71 -0.79 7.15 16 36 H 0.41 4.78 8.59 -92.71 -0.80 3.98 16 37 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.10 0.60 8.11 -2.39 -0.02 0.58 16 39 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 43 H 0.12 3.94 4.72 -2.91 -0.01 3.93 16 Total: -1.00 -77.47 357.06 0.88 -76.60 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -0.58 Total: 14.72 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 4.41 Total: -10.58 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -4.60 Total: -95.98 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -1.01 Total: -27.66 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.78 Total: -3.83 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -77.47 0.88 -76.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171741201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.267 kcal (2) G-P(sol) polarization free energy of solvation -77.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds