Wall clock time and date at job start Tue Mar 31 2020 13:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86800 * 120.00276 * 2 1 4 4 H 1.48508 * 109.46885 * 269.99563 * 3 2 1 5 5 H 1.48498 * 109.47425 * 29.99534 * 3 2 1 6 6 H 1.48497 * 109.47200 * 149.99867 * 3 2 1 7 7 C 1.38661 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00046 * 180.02562 * 7 2 1 9 9 O 1.34832 * 119.99360 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99610 * 185.05884 * 9 7 2 11 11 C 1.38877 * 120.06839 * 354.46935 * 10 9 7 12 12 C 1.38105 * 119.93265 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.06466 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.93008 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.46970 * 89.99730 * 14 13 12 16 16 C 1.46901 * 110.99852 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47259 * 180.02562 * 16 15 14 18 18 C 1.36666 * 120.11288 * 260.02103 * 17 16 15 19 19 C 1.38786 * 120.52374 * 179.97438 * 18 17 16 20 20 C 1.37798 * 120.66861 * 359.62912 * 19 18 17 21 21 C 1.39078 * 119.77405 * 0.56382 * 20 19 18 22 22 N 1.37692 * 133.51335 * 179.31028 * 21 20 19 23 23 H 0.97003 * 125.05769 * 359.97438 * 22 21 20 24 24 C 1.36828 * 109.87638 * 180.02562 * 22 21 20 25 25 C 1.34236 * 109.94225 * 0.02562 * 24 22 21 26 26 C 1.39590 * 120.11868 * 79.99583 * 17 16 15 27 27 C 1.38299 * 120.13827 * 0.24535 * 13 12 11 28 28 C 1.38105 * 120.07035 * 359.46115 * 27 13 12 29 29 H 0.97002 * 119.99914 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.03706 * 359.97438 * 11 10 9 31 31 H 1.07993 * 119.96828 * 180.02562 * 12 11 10 32 32 H 1.08997 * 109.47311 * 330.00037 * 14 13 12 33 33 H 1.08993 * 109.46994 * 209.99472 * 14 13 12 34 34 H 1.00896 * 111.00253 * 56.05094 * 15 14 13 35 35 H 1.08998 * 109.47532 * 59.99332 * 16 15 14 36 36 H 1.09011 * 109.46933 * 300.00139 * 16 15 14 37 37 H 1.08001 * 119.73728 * 359.97438 * 18 17 16 38 38 H 1.08007 * 119.66553 * 180.02562 * 19 18 17 39 39 H 1.07999 * 120.11041 * 179.89507 * 20 19 18 40 40 H 1.08007 * 125.03137 * 179.97438 * 24 22 21 41 41 H 1.07998 * 126.50626 * 179.97438 * 25 24 22 42 42 H 1.08000 * 119.96310 * 179.70200 * 27 13 12 43 43 H 1.07997 * 120.03439 * 180.27067 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4002 5 1 1.4471 2.6527 0.6999 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0016 10 6 2.0699 -3.5045 0.1087 11 6 3.4570 -3.4395 0.0953 12 6 4.2023 -4.5971 0.2040 13 6 3.5685 -5.8203 0.3255 14 6 4.3847 -7.0817 0.4433 15 7 4.6571 -7.3581 1.8601 16 6 5.4532 -8.5831 2.0139 17 6 5.7114 -8.8341 3.4772 18 6 6.9128 -8.4896 4.0303 19 6 7.1596 -8.7164 5.3771 20 6 6.1966 -9.2852 6.1821 21 6 4.9684 -9.6472 5.6393 22 7 3.8361 -10.2310 6.1617 23 1 3.7250 -10.5022 7.0864 24 6 2.8914 -10.3727 5.1821 25 6 3.3640 -9.8989 4.0184 26 6 4.7244 -9.4186 4.2725 27 6 2.1873 -5.8890 0.3335 28 6 1.4364 -4.7343 0.2313 29 1 -0.4850 0.8401 -0.0004 30 1 3.9525 -2.4847 -0.0008 31 1 5.2810 -4.5471 0.1940 32 1 5.3270 -6.9558 -0.0899 33 1 3.8308 -7.9146 0.0105 34 1 3.7996 -7.4151 2.3887 35 1 6.4028 -8.4674 1.4915 36 1 4.9069 -9.4268 1.5918 37 1 7.6761 -8.0375 3.4145 38 1 8.1138 -8.4384 5.7999 39 1 6.3989 -9.4591 7.2286 40 1 1.9109 -10.8029 5.3238 41 1 2.8419 -9.8793 3.0732 42 1 1.6953 -6.8461 0.4237 43 1 0.3579 -4.7882 0.2421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171769023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:57 Heat of formation + Delta-G solvation = 36.381678 kcal Electronic energy + Delta-G solvation = -24907.410426 eV Core-core repulsion = 21303.495291 eV Total energy + Delta-G solvation = -3603.915135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.07197 -40.76400 -38.79448 -38.08861 -36.38838 -34.31598 -33.19402 -31.76651 -31.24273 -30.24853 -29.61217 -27.59353 -26.46407 -24.51405 -23.59046 -22.83609 -22.62022 -21.94800 -21.23765 -19.81671 -18.83297 -18.47216 -17.32759 -16.76129 -16.43991 -16.23373 -16.03152 -15.83770 -15.82488 -15.46341 -15.23935 -15.07917 -14.71928 -14.69904 -14.28641 -14.05640 -13.88524 -13.57330 -13.37923 -13.13605 -12.91981 -12.81328 -12.51675 -12.40468 -12.30637 -12.23518 -12.12687 -12.02074 -11.58269 -11.15211 -10.79049 -10.56085 -9.74540 -9.29061 -9.08148 -8.87776 -8.53159 -8.46329 -6.14215 0.22218 0.63408 0.70520 0.78105 1.35307 1.44628 1.53019 1.87672 2.18755 2.34111 2.78762 2.95989 3.17709 3.54305 3.68131 3.83574 4.04048 4.06740 4.11173 4.15932 4.24031 4.34176 4.42692 4.48527 4.54523 4.63467 4.66970 4.74058 4.78257 4.83315 4.87079 5.02194 5.11796 5.12334 5.18040 5.24625 5.33528 5.59178 5.61948 5.74286 5.79755 5.83213 5.85639 5.90740 6.04518 6.13881 6.27692 6.31761 6.48477 6.77569 6.98642 7.79972 8.77121 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017025 B = 0.002271 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.283877 B =12325.352334 C =12448.409133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.245 4.245 12 C -0.050 4.050 13 C -0.157 4.157 14 C 0.122 3.878 15 N -0.687 5.687 16 C 0.106 3.894 17 C -0.051 4.051 18 C -0.141 4.141 19 C -0.108 4.108 20 C -0.138 4.138 21 C 0.071 3.929 22 N -0.591 5.591 23 H 0.428 0.572 24 C 0.062 3.938 25 C -0.235 4.235 26 C -0.124 4.124 27 C -0.059 4.059 28 C -0.205 4.205 29 H 0.272 0.728 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.340 0.660 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.204 0.796 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.570 -23.414 10.960 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.264 4.264 12 C -0.069 4.069 13 C -0.158 4.158 14 C -0.006 4.006 15 N -0.318 5.318 16 C -0.022 4.022 17 C -0.052 4.052 18 C -0.161 4.161 19 C -0.127 4.127 20 C -0.159 4.159 21 C -0.037 4.037 22 N -0.195 5.195 23 H 0.267 0.733 24 C -0.065 4.065 25 C -0.260 4.260 26 C -0.129 4.129 27 C -0.078 4.078 28 C -0.224 4.224 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.153 0.847 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.158 0.842 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.149 0.851 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.221 0.779 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.667 -22.891 11.069 28.408 hybrid contribution -0.855 0.359 0.137 0.937 sum 11.812 -22.532 11.207 27.800 Atomic orbital electron populations 1.70182 1.08015 1.28765 1.49055 1.26585 0.96859 1.02716 0.95897 0.84595 0.77786 0.74580 0.79304 1.18680 1.19526 1.17773 1.21817 0.92484 0.81517 1.53124 0.88247 1.83938 1.35935 1.12593 1.81531 1.19949 0.91597 0.87992 0.94190 1.21257 0.93125 1.00009 1.12001 1.20913 0.99661 0.90953 0.95359 1.19633 0.93260 0.95134 1.07768 1.20641 0.98471 0.92545 0.88952 1.60560 1.24785 1.36528 1.09951 1.20806 0.98823 0.90576 0.92017 1.19123 0.93245 0.97578 0.95302 1.20783 0.97308 1.02067 0.95938 1.21107 0.99508 0.98689 0.93424 1.20323 0.91040 1.03723 1.00782 1.18523 0.90260 1.01318 0.93572 1.41843 1.11597 1.53836 1.12223 0.73290 1.22359 0.95479 1.01360 0.87294 1.21877 0.94561 1.09980 0.99535 1.19379 0.95770 1.04420 0.93304 1.20892 0.93376 0.96846 0.96676 1.20434 0.99881 0.90579 1.11522 0.91850 0.86591 0.84689 0.89700 0.93348 0.84216 0.89579 0.93986 0.85127 0.83659 0.84356 0.77942 0.83541 0.83591 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.60 13.67 21.61 0.30 -57.31 16 2 C -0.02 -1.36 5.49 84.84 0.47 -0.89 16 3 Si 1.02 43.80 29.55 68.60 2.03 45.83 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.41 -24.71 9.49 67.92 0.64 -24.06 16 8 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 9 O -0.23 -14.41 9.76 -22.79 -0.22 -14.64 16 10 C 0.11 5.80 6.65 22.58 0.15 5.95 16 11 C -0.24 -11.09 9.17 22.39 0.21 -10.89 16 12 C -0.05 -1.82 9.69 22.25 0.22 -1.61 16 13 C -0.16 -5.00 5.40 -19.83 -0.11 -5.11 16 14 C 0.12 2.89 5.81 85.56 0.50 3.39 16 15 N -0.69 -16.58 6.48 -521.97 -3.38 -19.96 16 16 C 0.11 2.16 5.72 85.56 0.49 2.65 16 17 C -0.05 -1.15 5.39 -19.91 -0.11 -1.26 16 18 C -0.14 -2.89 9.60 22.03 0.21 -2.68 16 19 C -0.11 -1.94 10.01 22.30 0.22 -1.72 16 20 C -0.14 -2.45 10.08 22.37 0.23 -2.22 16 21 C 0.07 1.41 7.28 39.03 0.28 1.70 16 22 N -0.59 -8.39 6.07 -187.61 -1.14 -9.53 16 23 H 0.43 3.27 8.96 -92.71 -0.83 2.44 16 24 C 0.06 0.86 11.81 83.00 0.98 1.84 16 25 C -0.23 -4.45 10.94 23.51 0.26 -4.20 16 26 C -0.12 -2.78 6.16 -20.20 -0.12 -2.90 16 27 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 28 C -0.20 -8.92 9.99 22.39 0.22 -8.70 16 29 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.12 5.37 5.64 -2.91 -0.02 5.36 16 31 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 32 H 0.08 1.84 8.08 -2.39 -0.02 1.82 16 33 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 34 H 0.34 8.76 8.71 -89.70 -0.78 7.98 16 35 H 0.09 1.58 7.99 -2.39 -0.02 1.56 16 36 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.13 2.32 8.02 -2.91 -0.02 2.29 16 38 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 39 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 40 H 0.20 1.22 8.06 -2.91 -0.02 1.19 16 41 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 42 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 43 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -76.66 368.77 1.97 -74.69 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.56 Total: 33.42 kcal Atomic # 6 Polarization: -57.46 SS G_CDS: 4.95 Total: -52.51 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -4.22 Total: -86.79 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.22 Total: -14.64 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -76.66 1.97 -74.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171769023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.068 kcal (2) G-P(sol) polarization free energy of solvation -76.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds