Wall clock time and date at job start Tue Mar 31 2020 12:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47473 * 2 1 4 4 C 1.35662 * 117.00293 * 180.02562 * 3 2 1 5 5 C 1.39083 * 119.88071 * 0.02562 * 4 3 2 6 6 C 1.36587 * 120.23872 * 179.97438 * 5 4 3 7 7 C 1.40031 * 120.01027 * 0.02562 * 6 5 4 8 8 C 1.46860 * 120.11250 * 179.97438 * 7 6 5 9 9 C 1.50695 * 120.00039 * 0.02562 * 8 7 6 10 10 O 1.21294 * 119.99720 * 180.02562 * 8 7 6 11 11 C 1.40033 * 119.77326 * 359.73014 * 7 6 5 12 12 C 1.37656 * 119.75742 * 0.51862 * 11 7 6 13 13 C 1.50703 * 120.00645 * 179.77746 * 12 11 7 14 14 S 1.81401 * 109.47002 * 269.72212 * 13 12 11 15 15 C 1.81397 * 102.99785 * 179.97438 * 14 13 12 16 16 C 1.53007 * 109.47166 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47087 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.46753 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00366 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99543 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00075 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99632 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47243 * 90.00000 * 22 20 18 24 24 H 1.48505 * 109.47175 * 209.99913 * 22 20 18 25 25 H 1.48496 * 109.47465 * 329.99915 * 22 20 18 26 26 H 1.09001 * 109.46496 * 300.00208 * 1 2 3 27 27 H 1.08999 * 109.47141 * 59.99384 * 1 2 3 28 28 H 1.08999 * 109.47209 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46496 * 239.99792 * 2 1 3 30 30 H 1.08999 * 109.47141 * 120.00616 * 2 1 3 31 31 H 1.07998 * 119.88261 * 0.02716 * 5 4 3 32 32 H 1.08002 * 119.99057 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.47203 * 90.00484 * 9 8 7 34 34 H 1.09002 * 109.47234 * 209.99297 * 9 8 7 35 35 H 1.09000 * 109.47668 * 329.99998 * 9 8 7 36 36 H 1.08006 * 120.12548 * 180.27400 * 11 7 6 37 37 H 1.09002 * 109.47152 * 149.72313 * 13 12 11 38 38 H 1.09001 * 109.46980 * 29.72413 * 13 12 11 39 39 H 1.09004 * 109.47371 * 299.99984 * 15 14 13 40 40 H 1.09000 * 109.47527 * 60.00229 * 15 14 13 41 41 H 1.08991 * 109.47137 * 300.00517 * 16 15 14 42 42 H 1.09000 * 109.46480 * 60.00238 * 16 15 14 43 43 H 1.09004 * 109.47426 * 299.99978 * 17 16 15 44 44 H 1.09000 * 109.47550 * 60.00271 * 17 16 15 45 45 H 0.97001 * 119.99667 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3514 1.5249 -0.0005 5 6 4.1963 0.4202 -0.0016 6 6 5.5515 0.5907 -0.0027 7 6 6.0950 1.8812 -0.0022 8 6 7.5518 2.0671 -0.0028 9 6 8.4645 0.8679 -0.0045 10 8 8.0204 3.1859 -0.0019 11 6 5.2448 2.9938 -0.0063 12 6 3.8804 2.8111 0.0000 13 6 2.9602 4.0046 0.0007 14 16 2.5917 4.4829 1.7112 15 6 1.4917 5.9109 1.5076 16 6 1.0830 6.4403 2.8838 17 6 0.1557 7.6450 2.7120 18 6 -0.2462 8.1668 4.0675 19 1 0.1232 7.6874 4.9619 20 6 -1.0855 9.2563 4.1656 21 7 -1.5349 9.8404 3.0763 22 14 -1.5843 9.9026 5.8458 23 1 -0.6073 10.9283 6.2916 24 1 -2.9364 10.5108 5.7608 25 1 -1.6057 8.7827 6.8206 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7794 -0.5761 -0.0024 32 1 6.2039 -0.2701 -0.0039 33 1 8.6840 0.5799 -1.0326 34 1 9.3931 1.1173 0.5090 35 1 7.9766 0.0392 0.5087 36 1 5.6579 3.9917 -0.0104 37 1 2.0333 3.7490 -0.5128 38 1 3.4429 4.8358 -0.5132 39 1 2.0115 6.6944 0.9562 40 1 0.6014 5.6081 0.9563 41 1 0.5631 5.6567 3.4348 42 1 1.9731 6.7430 3.4354 43 1 0.6762 8.4285 2.1611 44 1 -0.7343 7.3427 2.1601 45 1 -2.1251 10.6071 3.1455 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178385744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:29 Heat of formation + Delta-G solvation = -77.819693 kcal Electronic energy + Delta-G solvation = -23491.641492 eV Core-core repulsion = 19985.925414 eV Total energy + Delta-G solvation = -3505.716078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.84670 -39.49055 -37.53422 -34.40728 -33.66511 -32.00437 -31.98436 -31.11767 -29.66569 -27.58258 -26.90068 -24.53834 -23.54855 -23.20781 -21.67673 -20.28247 -19.71565 -18.56902 -16.82966 -16.65736 -16.54959 -16.36909 -15.61555 -15.22582 -15.17429 -14.68310 -14.61303 -14.52816 -14.14343 -14.09462 -13.64518 -13.21249 -13.14300 -12.92854 -12.67969 -12.59117 -12.51466 -12.38371 -12.11252 -12.02991 -11.67031 -11.62963 -11.11642 -11.08347 -10.86780 -10.84947 -10.52642 -10.01317 -9.86952 -9.74912 -9.28528 -9.19742 -9.05669 -8.45088 -8.34305 -7.32736 -5.99413 -4.01647 0.40715 0.86737 1.91887 2.30969 2.78977 2.95692 3.33784 3.39624 3.43754 3.51344 3.78397 4.20909 4.36029 4.47511 4.55921 4.61139 4.70311 4.76805 4.83571 4.85979 4.96750 5.04056 5.08858 5.22906 5.32614 5.36488 5.47725 5.50334 5.53160 5.57658 5.69245 5.71270 5.76501 5.86533 5.89321 6.08820 6.19187 6.34465 6.60619 6.76906 7.00477 7.06276 7.29380 7.66586 7.79241 7.99918 8.42076 9.04838 9.62309 11.11964 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.002412 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.164073 B =11606.635143 C =13159.366534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 O -0.298 6.298 4 C 0.183 3.817 5 C -0.225 4.225 6 C -0.030 4.030 7 C -0.217 4.217 8 C 0.398 3.602 9 C -0.200 4.200 10 O -0.462 6.462 11 C -0.002 4.002 12 C -0.113 4.113 13 C -0.041 4.041 14 S -0.268 6.268 15 C -0.074 4.074 16 C -0.094 4.094 17 C 0.027 3.973 18 C -0.519 4.519 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.376 -26.106 -11.267 31.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.022 4.022 3 O -0.210 6.210 4 C 0.134 3.866 5 C -0.243 4.243 6 C -0.049 4.049 7 C -0.218 4.218 8 C 0.277 3.723 9 C -0.257 4.257 10 O -0.338 6.338 11 C -0.022 4.022 12 C -0.115 4.115 13 C -0.188 4.188 14 S -0.038 6.038 15 C -0.222 4.222 16 C -0.133 4.133 17 C -0.011 4.011 18 C -0.558 4.558 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.161 0.839 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.667 -25.689 -10.389 30.897 hybrid contribution -0.806 0.607 -0.267 1.044 sum 12.861 -25.082 -10.656 30.134 Atomic orbital electron populations 1.21791 0.92276 1.02923 1.04137 1.22896 0.96415 0.81503 1.01428 1.86134 1.18411 1.29715 1.86733 1.19125 0.82830 0.93303 0.91306 1.20931 0.94259 0.98184 1.10968 1.20968 0.94566 0.96275 0.93059 1.20330 0.95134 0.93920 1.12438 1.22303 0.88692 0.90359 0.70984 1.22228 1.00676 0.98162 1.04615 1.90569 1.78676 1.27696 1.36860 1.21186 0.90953 0.99497 0.90582 1.18613 0.93424 0.91318 1.08115 1.22025 1.01386 0.97572 0.97822 1.87026 1.64762 1.41819 1.10190 1.23630 0.99094 0.95437 1.04045 1.21453 1.00436 0.99665 0.91735 1.19104 0.93629 0.91067 0.97347 1.21230 1.28502 1.13429 0.92618 0.92560 1.25027 0.96127 0.96707 0.96629 1.69967 1.33947 1.22165 1.27475 0.86572 0.77805 0.79115 0.84396 1.20621 1.21226 1.19835 0.90933 0.91403 0.90297 0.91911 0.91653 0.84697 0.84712 0.88573 0.89424 0.89652 0.83912 0.88883 0.89336 0.90588 0.90593 0.92456 0.92433 0.96437 0.96447 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.38 5.45 37.16 0.20 0.58 16 3 O -0.30 -3.26 9.16 -18.69 -0.17 -3.43 16 4 C 0.18 2.00 6.67 -38.96 -0.26 1.74 16 5 C -0.22 -1.85 8.96 -39.86 -0.36 -2.21 16 6 C -0.03 -0.22 9.30 -39.51 -0.37 -0.59 16 7 C -0.22 -2.16 5.87 -105.06 -0.62 -2.78 16 8 C 0.40 3.92 7.22 -30.82 -0.22 3.70 16 9 C -0.20 -1.09 9.75 36.00 0.35 -0.74 16 10 O -0.46 -6.34 17.09 5.55 0.09 -6.25 16 11 C 0.00 -0.03 9.24 -39.12 -0.36 -0.39 16 12 C -0.11 -1.38 5.15 -104.52 -0.54 -1.92 16 13 C -0.04 -0.54 5.85 36.01 0.21 -0.33 16 14 S -0.27 -4.44 21.72 -107.50 -2.33 -6.78 16 15 C -0.07 -1.34 5.94 37.16 0.22 -1.12 16 16 C -0.09 -2.03 5.16 -26.73 -0.14 -2.17 16 17 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 18 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 22 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 30 H 0.07 0.41 7.65 -51.93 -0.40 0.01 16 31 H 0.14 0.75 6.27 -52.49 -0.33 0.42 16 32 H 0.14 0.55 6.34 -52.49 -0.33 0.21 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.29 6.46 -51.93 -0.34 -0.05 16 36 H 0.14 1.76 7.65 -52.48 -0.40 1.35 16 37 H 0.09 1.21 7.53 -51.92 -0.39 0.82 16 38 H 0.09 1.08 8.08 -51.92 -0.42 0.66 16 39 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 40 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -33.86 389.73 -10.06 -43.92 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -7.19 Total: -3.78 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -2.04 Total: -20.05 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.08 Total: -9.68 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -2.33 Total: -6.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.86 -10.06 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178385744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.900 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds