Wall clock time and date at job start Tue Mar 31 2020 13:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99984 * 2 1 4 4 H 1.48492 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46712 * 299.99188 * 3 2 1 6 6 H 1.48498 * 109.47346 * 59.99312 * 3 2 1 7 7 C 1.37875 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99936 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00400 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47611 * 184.61226 * 9 7 2 11 11 C 1.46904 * 110.99825 * 299.14486 * 10 9 7 12 12 C 1.50696 * 109.47616 * 287.56441 * 11 10 9 13 13 C 1.33996 * 124.92746 * 94.20403 * 12 11 10 14 14 C 1.46777 * 106.18671 * 179.90208 * 13 12 11 15 15 C 1.39411 * 134.37309 * 180.11866 * 14 13 12 16 16 C 1.36732 * 119.71964 * 180.26435 * 15 14 13 17 17 C 1.38739 * 120.41670 * 0.02562 * 16 15 14 18 18 C 1.37852 * 120.68697 * 0.02562 * 17 16 15 19 19 C 1.38941 * 119.81507 * 359.97438 * 18 17 16 20 20 O 1.34452 * 124.92159 * 274.51948 * 12 11 10 21 21 C 1.46903 * 111.00133 * 63.09957 * 10 9 7 22 22 C 1.50696 * 109.47047 * 66.04829 * 21 10 9 23 23 C 1.38224 * 119.62029 * 94.97798 * 22 21 10 24 24 C 1.38628 * 119.16710 * 179.79326 * 23 22 21 25 25 C 1.38679 * 118.41429 * 0.47038 * 24 23 22 26 26 C 1.38179 * 119.16340 * 359.50999 * 25 24 23 27 27 N 1.31859 * 119.61917 * 275.00286 * 22 21 10 28 28 H 0.97000 * 120.00165 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46802 * 64.60553 * 9 7 2 30 30 H 1.09005 * 109.46953 * 304.61672 * 9 7 2 31 31 H 1.09006 * 109.46798 * 47.56540 * 11 10 9 32 32 H 1.09000 * 109.47041 * 167.55954 * 11 10 9 33 33 H 1.08003 * 126.90310 * 0.02911 * 13 12 11 34 34 H 1.08001 * 120.13420 * 0.28603 * 15 14 13 35 35 H 1.07997 * 119.79086 * 179.97438 * 16 15 14 36 36 H 1.08006 * 119.65911 * 179.97438 * 17 16 15 37 37 H 1.07997 * 120.09024 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.46876 * 306.04773 * 21 10 9 39 39 H 1.09000 * 109.46724 * 186.04796 * 21 10 9 40 40 H 1.08008 * 120.41871 * 359.97438 * 23 22 21 41 41 H 1.07996 * 120.79384 * 180.23294 * 24 23 22 42 42 H 1.07997 * 120.41521 * 179.78351 * 25 24 23 43 43 H 1.08002 * 119.61729 * 180.25224 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2017 -3.6134 0.1125 11 6 3.1333 -3.6268 -1.0233 12 6 2.4072 -4.0805 -2.2634 13 6 1.8436 -3.2643 -3.1643 14 6 1.2592 -4.1322 -4.1936 15 6 0.5516 -3.9056 -5.3732 16 6 0.1311 -4.9667 -6.1260 17 6 0.4038 -6.2659 -5.7228 18 6 1.1013 -6.5096 -4.5590 19 6 1.5377 -5.4455 -3.7794 20 8 2.2258 -5.3632 -2.6231 21 6 2.9278 -3.5598 1.3884 22 6 1.9655 -3.7941 2.5242 23 6 1.8138 -5.0677 3.0394 24 6 0.9292 -5.2717 4.0871 25 6 0.2197 -4.1838 4.5731 26 6 0.4242 -2.9396 4.0078 27 7 1.2776 -2.7818 3.0148 28 1 -0.4850 0.8400 -0.0004 29 1 0.6881 -2.5936 -0.9280 30 1 0.5635 -2.5217 0.8461 31 1 3.5289 -2.6233 -1.1805 32 1 3.9543 -4.3119 -0.8117 33 1 1.8251 -2.1847 -3.1392 34 1 0.3367 -2.8960 -5.6911 35 1 -0.4176 -4.7925 -7.0397 36 1 0.0655 -7.0951 -6.3266 37 1 1.3087 -7.5248 -4.2544 38 1 3.3918 -2.5800 1.5015 39 1 3.6986 -4.3304 1.4004 40 1 2.3795 -5.8930 2.6329 41 1 0.7930 -6.2551 4.5121 42 1 -0.4805 -4.3067 5.3861 43 1 -0.1215 -2.0865 4.3833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178540385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:38 Heat of formation + Delta-G solvation = 80.360984 kcal Electronic energy + Delta-G solvation = -26370.034081 eV Core-core repulsion = 22768.026032 eV Total energy + Delta-G solvation = -3602.008049 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.00456 -39.73326 -37.69384 -36.73505 -32.61846 -32.48115 -31.96302 -31.35163 -30.14042 -29.45061 -27.21915 -26.27078 -24.29895 -23.01460 -22.66696 -22.21987 -21.32386 -20.63613 -19.81297 -16.98697 -16.83384 -16.28255 -16.20780 -15.90800 -15.65665 -15.21853 -14.86692 -14.76851 -14.55117 -13.94888 -13.70857 -13.48609 -13.06159 -12.94026 -12.79016 -12.55769 -12.29836 -12.04193 -12.00148 -11.81647 -11.45613 -11.03945 -11.01710 -10.86531 -10.83260 -10.54570 -10.31092 -10.02816 -9.75557 -9.57291 -9.36670 -8.73681 -8.57618 -8.35169 -8.30739 -7.74799 -7.29313 -5.94487 -4.00768 1.20090 1.55773 1.62706 1.75261 2.81933 3.14734 3.30613 3.39169 3.40475 3.98046 4.24823 4.46650 4.76327 4.84407 4.98327 5.09528 5.10279 5.21945 5.29739 5.38496 5.42562 5.45382 5.51326 5.56094 5.58686 5.75015 5.80187 5.88429 6.04566 6.13464 6.13979 6.24062 6.26415 6.40279 6.48624 6.54387 6.56423 6.65544 6.68409 6.92108 6.98553 7.12921 7.21843 7.60563 7.64477 7.92398 8.00004 8.17787 8.31867 8.65192 9.04692 9.63781 11.12219 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009745 B = 0.004531 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.498526 B = 6178.127400 C = 8169.328816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.181 3.819 10 N -0.535 5.535 11 C 0.127 3.873 12 C 0.067 3.933 13 C -0.194 4.194 14 C -0.123 4.123 15 C -0.072 4.072 16 C -0.144 4.144 17 C -0.107 4.107 18 C -0.109 4.109 19 C 0.047 3.953 20 O -0.191 6.191 21 C 0.106 3.894 22 C 0.154 3.846 23 C -0.164 4.164 24 C -0.086 4.086 25 C -0.188 4.188 26 C 0.099 3.901 27 N -0.442 5.442 28 H 0.259 0.741 29 H 0.029 0.971 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.162 0.838 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.701 -11.734 -1.967 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.129 4.129 3 Si 0.711 3.289 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.056 3.944 10 N -0.259 5.259 11 C 0.000 4.000 12 C 0.019 3.981 13 C -0.214 4.214 14 C -0.123 4.123 15 C -0.090 4.090 16 C -0.162 4.162 17 C -0.125 4.125 18 C -0.127 4.127 19 C -0.001 4.001 20 O -0.092 6.092 21 C -0.022 4.022 22 C 0.016 3.984 23 C -0.185 4.185 24 C -0.112 4.112 25 C -0.208 4.208 26 C -0.058 4.058 27 N -0.150 5.150 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.180 0.820 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.501 -11.449 -2.175 11.919 hybrid contribution 0.381 1.085 0.413 1.222 sum 2.882 -10.364 -1.762 10.901 Atomic orbital electron populations 1.69955 1.05939 1.26305 1.50193 1.24814 0.94565 0.98631 0.94935 0.86704 0.80127 0.84614 0.77472 1.19977 1.21264 1.21088 1.21499 0.92689 0.91861 1.51488 0.92822 1.19946 0.91100 0.84766 0.98586 1.62541 1.16366 1.48335 0.98695 1.20564 0.92772 1.00615 0.86088 1.22373 0.99547 0.79495 0.96675 1.22390 1.03765 1.00620 0.94655 1.20075 1.02105 0.93075 0.97093 1.20307 0.96419 0.99487 0.92786 1.20673 1.02495 0.92428 1.00619 1.20793 0.98893 0.97099 0.95684 1.19855 1.01679 0.96488 0.94693 1.19651 0.97558 0.95533 0.87330 1.83954 1.61561 1.29176 1.34547 1.20828 0.92787 1.01495 0.87073 1.21160 0.94286 0.88460 0.94504 1.21919 1.00532 0.98161 0.97850 1.21434 0.95227 0.98770 0.95775 1.22054 1.01840 0.94513 1.02401 1.22800 0.94803 0.96345 0.91899 1.67773 1.04757 1.34217 1.08293 0.93136 0.95342 0.93090 0.89366 0.90827 0.82019 0.85771 0.85892 0.85395 0.85579 0.91388 0.91250 0.85376 0.85668 0.85661 0.83392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 3 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.54 -14.03 7.33 -34.44 -0.25 -14.28 16 8 H 0.05 1.37 5.95 -52.49 -0.31 1.06 16 9 C 0.18 4.56 4.70 -4.98 -0.02 4.54 16 10 N -0.53 -11.12 4.64 -238.96 -1.11 -12.23 16 11 C 0.13 2.36 5.32 -4.98 -0.03 2.33 16 12 C 0.07 1.29 6.23 -35.80 -0.22 1.07 16 13 C -0.19 -3.80 9.98 -37.62 -0.38 -4.17 16 14 C -0.12 -2.21 6.40 -105.16 -0.67 -2.88 16 15 C -0.07 -1.10 10.05 -39.69 -0.40 -1.49 16 16 C -0.14 -1.84 9.98 -39.94 -0.40 -2.24 16 17 C -0.11 -1.30 10.01 -39.54 -0.40 -1.70 16 18 C -0.11 -1.54 10.07 -39.46 -0.40 -1.94 16 19 C 0.05 0.83 7.42 -38.47 -0.29 0.54 16 20 O -0.19 -3.62 10.58 3.91 0.04 -3.57 16 21 C 0.11 1.99 5.09 -4.98 -0.03 1.96 16 22 C 0.15 2.91 5.70 -82.59 -0.47 2.44 16 23 C -0.16 -2.56 9.72 -39.44 -0.38 -2.94 16 24 C -0.09 -1.18 10.18 -39.27 -0.40 -1.58 16 25 C -0.19 -2.67 10.11 -39.44 -0.40 -3.07 16 26 C 0.10 1.72 11.18 -17.55 -0.20 1.53 16 27 N -0.44 -9.18 8.77 -9.48 -0.08 -9.27 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.79 6.70 -51.93 -0.35 0.44 16 30 H 0.05 1.43 6.17 -51.93 -0.32 1.11 16 31 H 0.09 1.71 6.13 -51.93 -0.32 1.39 16 32 H 0.07 1.15 7.80 -51.93 -0.41 0.74 16 33 H 0.16 3.25 8.06 -52.48 -0.42 2.83 16 34 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.07 1.40 6.60 -51.93 -0.34 1.06 16 39 H 0.07 1.06 7.76 -51.93 -0.40 0.65 16 40 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -31.76 361.02 -10.81 -42.56 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.39 Total: 5.91 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -5.42 Total: -19.97 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.46 Total: -46.57 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: 0.04 Total: -3.57 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.76 -10.81 -42.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178540385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.924 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds