Wall clock time and date at job start Tue Mar 31 2020 13:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99984 * 2 1 4 4 H 1.48492 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46712 * 299.99188 * 3 2 1 6 6 H 1.48498 * 109.47346 * 59.99312 * 3 2 1 7 7 C 1.37875 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99936 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00400 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47611 * 184.61226 * 9 7 2 11 11 C 1.46904 * 110.99825 * 299.14486 * 10 9 7 12 12 C 1.50696 * 109.47616 * 287.56441 * 11 10 9 13 13 C 1.33996 * 124.92746 * 94.20403 * 12 11 10 14 14 C 1.46777 * 106.18671 * 179.90208 * 13 12 11 15 15 C 1.39411 * 134.37309 * 180.11866 * 14 13 12 16 16 C 1.36732 * 119.71964 * 180.26435 * 15 14 13 17 17 C 1.38739 * 120.41670 * 0.02562 * 16 15 14 18 18 C 1.37852 * 120.68697 * 0.02562 * 17 16 15 19 19 C 1.38941 * 119.81507 * 359.97438 * 18 17 16 20 20 O 1.34452 * 124.92159 * 274.51948 * 12 11 10 21 21 C 1.46903 * 111.00133 * 63.09957 * 10 9 7 22 22 C 1.50696 * 109.47047 * 66.04829 * 21 10 9 23 23 C 1.38224 * 119.62029 * 94.97798 * 22 21 10 24 24 C 1.38628 * 119.16710 * 179.79326 * 23 22 21 25 25 C 1.38679 * 118.41429 * 0.47038 * 24 23 22 26 26 C 1.38179 * 119.16340 * 359.50999 * 25 24 23 27 27 N 1.31859 * 119.61917 * 275.00286 * 22 21 10 28 28 H 0.97000 * 120.00165 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46802 * 64.60553 * 9 7 2 30 30 H 1.09005 * 109.46953 * 304.61672 * 9 7 2 31 31 H 1.09006 * 109.46798 * 47.56540 * 11 10 9 32 32 H 1.09000 * 109.47041 * 167.55954 * 11 10 9 33 33 H 1.08003 * 126.90310 * 0.02911 * 13 12 11 34 34 H 1.08001 * 120.13420 * 0.28603 * 15 14 13 35 35 H 1.07997 * 119.79086 * 179.97438 * 16 15 14 36 36 H 1.08006 * 119.65911 * 179.97438 * 17 16 15 37 37 H 1.07997 * 120.09024 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.46876 * 306.04773 * 21 10 9 39 39 H 1.09000 * 109.46724 * 186.04796 * 21 10 9 40 40 H 1.08008 * 120.41871 * 359.97438 * 23 22 21 41 41 H 1.07996 * 120.79384 * 180.23294 * 24 23 22 42 42 H 1.07997 * 120.41521 * 179.78351 * 25 24 23 43 43 H 1.08002 * 119.61729 * 180.25224 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2017 -3.6134 0.1125 11 6 3.1333 -3.6268 -1.0233 12 6 2.4072 -4.0805 -2.2634 13 6 1.8436 -3.2643 -3.1643 14 6 1.2592 -4.1322 -4.1936 15 6 0.5516 -3.9056 -5.3732 16 6 0.1311 -4.9667 -6.1260 17 6 0.4038 -6.2659 -5.7228 18 6 1.1013 -6.5096 -4.5590 19 6 1.5377 -5.4455 -3.7794 20 8 2.2258 -5.3632 -2.6231 21 6 2.9278 -3.5598 1.3884 22 6 1.9655 -3.7941 2.5242 23 6 1.8138 -5.0677 3.0394 24 6 0.9292 -5.2717 4.0871 25 6 0.2197 -4.1838 4.5731 26 6 0.4242 -2.9396 4.0078 27 7 1.2776 -2.7818 3.0148 28 1 -0.4850 0.8400 -0.0004 29 1 0.6881 -2.5936 -0.9280 30 1 0.5635 -2.5217 0.8461 31 1 3.5289 -2.6233 -1.1805 32 1 3.9543 -4.3119 -0.8117 33 1 1.8251 -2.1847 -3.1392 34 1 0.3367 -2.8960 -5.6911 35 1 -0.4176 -4.7925 -7.0397 36 1 0.0655 -7.0951 -6.3266 37 1 1.3087 -7.5248 -4.2544 38 1 3.3918 -2.5800 1.5015 39 1 3.6986 -4.3304 1.4004 40 1 2.3795 -5.8930 2.6329 41 1 0.7930 -6.2551 4.5121 42 1 -0.4805 -4.3067 5.3861 43 1 -0.1215 -2.0865 4.3833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178540385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:37 Heat of formation + Delta-G solvation = 61.539429 kcal Electronic energy + Delta-G solvation = -26370.850245 eV Core-core repulsion = 22768.026032 eV Total energy + Delta-G solvation = -3602.824213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.34152 -41.02420 -38.92417 -38.28671 -34.55149 -33.94820 -33.20516 -32.66326 -31.31459 -30.83426 -29.09667 -27.61306 -26.10095 -24.25561 -24.03776 -23.57318 -22.57181 -22.01626 -21.42326 -18.68935 -18.23887 -17.71265 -17.42580 -17.33376 -16.98652 -16.68666 -16.37271 -16.15306 -16.04227 -15.54979 -15.05805 -14.80823 -14.44643 -14.28195 -14.11834 -13.99374 -13.87177 -13.45482 -13.20261 -13.10743 -12.91642 -12.81279 -12.72452 -12.40341 -12.31354 -12.22569 -11.95188 -11.77459 -11.64610 -10.99986 -10.65723 -10.48276 -10.04043 -9.84224 -9.53107 -9.14954 -8.96628 -8.06147 -6.19552 -0.00256 0.31819 0.45568 0.56967 1.35617 1.37850 1.41374 1.47206 1.81548 2.41930 2.81930 2.93078 3.23295 3.44073 3.56552 3.74629 3.79871 3.94380 4.12083 4.12769 4.22659 4.29357 4.32294 4.36018 4.40210 4.48374 4.56640 4.57494 4.72448 4.80624 4.88610 4.93538 5.00011 5.03993 5.27551 5.33642 5.37257 5.38283 5.39314 5.48263 5.53415 5.55888 5.82967 5.85254 5.96725 6.04461 6.23573 6.32273 6.40622 6.95664 7.37252 7.48396 8.99168 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009745 B = 0.004531 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.498526 B = 6178.127400 C = 8169.328816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.020 3.980 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.206 3.794 10 N -0.535 5.535 11 C 0.130 3.870 12 C 0.056 3.944 13 C -0.217 4.217 14 C -0.153 4.153 15 C -0.093 4.093 16 C -0.132 4.132 17 C -0.091 4.091 18 C -0.114 4.114 19 C 0.022 3.978 20 O -0.199 6.199 21 C 0.108 3.892 22 C 0.120 3.880 23 C -0.162 4.162 24 C -0.080 4.080 25 C -0.174 4.174 26 C 0.070 3.930 27 N -0.497 5.497 28 H 0.258 0.742 29 H -0.008 1.008 30 H 0.020 0.980 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.161 0.839 36 H 0.175 0.825 37 H 0.153 0.847 38 H 0.040 0.960 39 H 0.109 0.891 40 H 0.154 0.846 41 H 0.170 0.830 42 H 0.163 0.837 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -14.829 -2.511 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.080 3.920 10 N -0.259 5.259 11 C 0.003 3.997 12 C 0.008 3.992 13 C -0.237 4.237 14 C -0.154 4.154 15 C -0.111 4.111 16 C -0.150 4.150 17 C -0.108 4.108 18 C -0.132 4.132 19 C -0.026 4.026 20 O -0.101 6.101 21 C -0.019 4.019 22 C -0.017 4.017 23 C -0.182 4.182 24 C -0.106 4.106 25 C -0.193 4.193 26 C -0.088 4.088 27 N -0.207 5.207 28 H 0.067 0.933 29 H 0.010 0.990 30 H 0.038 0.962 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.179 0.821 36 H 0.192 0.808 37 H 0.171 0.829 38 H 0.059 0.941 39 H 0.127 0.873 40 H 0.172 0.828 41 H 0.187 0.813 42 H 0.181 0.819 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.716 -14.555 -2.723 15.055 hybrid contribution 0.241 1.913 0.509 1.995 sum 2.956 -12.642 -2.213 13.170 Atomic orbital electron populations 1.70094 1.07521 1.26927 1.52028 1.25585 0.95274 1.02054 0.95012 0.85712 0.79356 0.80579 0.77218 1.18852 1.20882 1.21256 1.21718 0.92821 0.92421 1.49645 0.92512 1.19394 0.91350 0.86077 0.95185 1.62407 1.17042 1.45929 1.00506 1.20577 0.93124 1.00799 0.85216 1.22357 1.00105 0.79933 0.96815 1.22364 1.04999 0.99933 0.96390 1.20274 1.03787 0.93141 0.98186 1.20602 0.96928 1.01063 0.92544 1.21172 1.00909 0.91919 1.00998 1.21398 0.96443 0.98240 0.94734 1.20367 1.01291 0.96811 0.94754 1.20225 0.98449 0.96483 0.87404 1.83894 1.62217 1.28496 1.35492 1.20921 0.93497 1.01377 0.86128 1.21259 0.95328 0.89787 0.95356 1.22201 1.00757 0.97282 0.97938 1.21955 0.93577 1.00441 0.94590 1.22414 1.01495 0.93147 1.02279 1.23041 0.95168 0.98310 0.92237 1.67604 1.06570 1.36330 1.10187 0.93317 0.98974 0.96166 0.90827 0.87308 0.84210 0.85234 0.82147 0.80763 0.82944 0.94139 0.87323 0.82793 0.81293 0.81942 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 2 C 0.02 1.12 5.46 84.65 0.46 1.59 16 3 Si 0.94 45.31 29.54 68.60 2.03 47.33 16 4 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.53 -29.09 7.33 25.60 0.19 -28.90 16 8 H 0.06 3.04 5.95 -2.91 -0.02 3.02 16 9 C 0.21 11.08 4.70 85.56 0.40 11.48 16 10 N -0.54 -23.09 4.64 -909.95 -4.23 -27.32 16 11 C 0.13 5.00 5.32 85.56 0.45 5.45 16 12 C 0.06 2.26 6.23 24.72 0.15 2.42 16 13 C -0.22 -9.16 9.98 23.54 0.23 -8.92 16 14 C -0.15 -5.72 6.40 -20.21 -0.13 -5.85 16 15 C -0.09 -2.82 10.05 22.20 0.22 -2.60 16 16 C -0.13 -2.97 9.98 22.04 0.22 -2.75 16 17 C -0.09 -1.84 10.01 22.30 0.22 -1.62 16 18 C -0.11 -2.95 10.07 22.35 0.23 -2.72 16 19 C 0.02 0.76 7.42 22.99 0.17 0.93 16 20 O -0.20 -7.69 10.58 -8.92 -0.09 -7.79 16 21 C 0.11 4.13 5.09 85.56 0.44 4.57 16 22 C 0.12 4.61 5.70 42.55 0.24 4.85 16 23 C -0.16 -4.74 9.72 22.36 0.22 -4.52 16 24 C -0.08 -1.95 10.18 22.47 0.23 -1.72 16 25 C -0.17 -4.59 10.11 22.36 0.23 -4.36 16 26 C 0.07 2.47 11.18 84.67 0.95 3.42 16 27 N -0.50 -21.60 8.77 -183.89 -1.61 -23.21 16 28 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 29 H -0.01 -0.47 6.70 -2.39 -0.02 -0.49 16 30 H 0.02 1.22 6.17 -2.38 -0.01 1.20 16 31 H 0.07 3.01 6.13 -2.38 -0.01 3.00 16 32 H 0.11 3.33 7.80 -2.39 -0.02 3.32 16 33 H 0.14 6.31 8.06 -2.91 -0.02 6.29 16 34 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.04 1.74 6.60 -2.39 -0.02 1.72 16 39 H 0.11 3.18 7.76 -2.39 -0.02 3.16 16 40 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 42 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 43 H 0.15 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -75.82 361.02 2.53 -73.29 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 1.02 Total: 23.55 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 5.13 Total: -29.27 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -5.55 Total: -107.12 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.09 Total: -7.79 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -75.82 2.53 -73.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178540385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.831 kcal (2) G-P(sol) polarization free energy of solvation -75.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds