Wall clock time and date at job start Tue Mar 31 2020 13:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47073 * 249.75088 * 3 2 1 5 5 C 1.37103 * 119.99918 * 264.23033 * 4 3 2 6 6 H 1.08003 * 119.99749 * 197.71807 * 5 4 3 7 7 C 1.38944 * 119.99861 * 17.72507 * 5 4 3 8 8 N 1.31410 * 120.00149 * 21.39482 * 7 5 4 9 9 Si 1.86803 * 119.99905 * 201.39378 * 7 5 4 10 10 H 1.48500 * 109.47100 * 89.99711 * 9 7 5 11 11 H 1.48495 * 109.47447 * 210.00007 * 9 7 5 12 12 H 1.48497 * 109.46941 * 330.00266 * 9 7 5 13 13 C 1.34771 * 119.99772 * 84.23434 * 4 3 2 14 14 O 1.21299 * 120.00040 * 179.97438 * 13 4 3 15 15 C 1.50696 * 120.00351 * 359.97438 * 13 4 3 16 16 C 1.53000 * 109.47539 * 179.97438 * 15 13 4 17 17 C 1.53001 * 109.47268 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47130 * 180.02562 * 17 16 15 19 19 C 1.39381 * 119.50505 * 270.29590 * 18 17 16 20 20 C 1.36092 * 120.98642 * 180.28177 * 19 18 17 21 21 C 1.40543 * 119.65578 * 359.70155 * 20 19 18 22 22 C 1.40539 * 121.28440 * 180.02562 * 21 20 19 23 23 C 1.36084 * 119.65444 * 180.02562 * 22 21 20 24 24 C 1.39379 * 120.99037 * 359.95321 * 23 22 21 25 25 C 1.36097 * 120.98803 * 0.02562 * 24 23 22 26 26 C 1.40539 * 119.65484 * 359.97438 * 25 24 23 27 27 C 1.36094 * 119.50731 * 89.99522 * 18 17 16 28 28 H 1.09007 * 109.46885 * 129.75051 * 3 2 1 29 29 H 1.09000 * 109.47401 * 9.75326 * 3 2 1 30 30 H 0.97008 * 119.99798 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46966 * 60.00167 * 15 13 4 32 32 H 1.09004 * 109.47356 * 300.00171 * 15 13 4 33 33 H 1.09001 * 109.46729 * 60.00176 * 16 15 13 34 34 H 1.08999 * 109.47183 * 300.00062 * 16 15 13 35 35 H 1.09001 * 109.47178 * 60.00358 * 17 16 15 36 36 H 1.08999 * 109.46993 * 300.00085 * 17 16 15 37 37 H 1.07989 * 119.50528 * 359.97438 * 19 18 17 38 38 H 1.07994 * 120.17378 * 179.72912 * 20 19 18 39 39 H 1.07999 * 120.16990 * 0.02579 * 22 21 20 40 40 H 1.08009 * 119.50751 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.50554 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.17017 * 180.02562 * 25 24 23 43 43 H 1.08006 * 120.16974 * 0.03097 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0960 0.4789 1.2959 5 6 3.4365 1.7973 1.4560 6 1 4.0526 2.0984 2.2904 7 6 2.9886 2.7460 0.5450 8 7 1.9354 2.4959 -0.1999 9 14 3.8838 4.3773 0.3793 10 1 4.9486 4.2553 -0.6485 11 1 2.9206 5.4313 -0.0285 12 1 4.4938 4.7418 1.6831 13 6 3.2105 -0.3771 2.3305 14 8 3.6150 0.0187 3.4033 15 6 2.8358 -1.8261 2.1546 16 6 3.0581 -2.5739 3.4708 17 6 2.6783 -4.0452 3.2919 18 6 2.8967 -4.7815 4.5885 19 6 4.1361 -5.3646 4.8465 20 6 4.3645 -6.0414 6.0049 21 6 3.3395 -6.1506 6.9602 22 6 3.5381 -6.8410 8.1681 23 6 2.5222 -6.9268 9.0695 24 6 1.2847 -6.3385 8.8143 25 6 1.0562 -5.6617 7.6558 26 6 2.0813 -5.5520 6.7007 27 6 1.8827 -4.8619 5.4927 28 1 2.9709 0.6580 -0.7902 29 1 2.9718 -1.0120 -0.1741 30 1 1.6226 3.1584 -0.8357 31 1 3.4562 -2.2698 1.3759 32 1 1.7865 -1.8980 1.8682 33 1 2.4380 -2.1303 4.2498 34 1 4.1075 -2.5021 3.7567 35 1 3.2987 -4.4885 2.5130 36 1 1.6290 -4.1173 3.0058 37 1 4.9253 -5.2823 4.1141 38 1 5.3285 -6.4919 6.1893 39 1 4.4919 -7.3012 8.3797 40 1 2.6774 -7.4583 9.9969 41 1 0.4954 -6.4210 9.5467 42 1 0.0923 -5.2107 7.4718 43 1 0.9289 -4.4014 5.2811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180148584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:17 Heat of formation + Delta-G solvation = 28.897616 kcal Electronic energy + Delta-G solvation = -25098.495207 eV Core-core repulsion = 21494.255539 eV Total energy + Delta-G solvation = -3604.239668 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.48161 -38.91072 -37.22013 -35.83245 -34.51031 -33.98345 -32.70232 -31.86160 -30.54553 -29.47565 -27.54111 -26.89541 -24.72372 -23.43311 -22.64674 -22.03419 -21.03124 -18.98950 -17.89804 -17.43711 -17.03392 -16.53916 -16.23169 -15.96493 -15.04797 -14.83308 -14.63489 -14.38214 -14.17667 -13.80623 -13.66326 -13.43710 -13.13236 -12.98295 -12.92621 -12.74025 -12.29791 -12.08197 -11.85501 -11.70583 -11.47802 -11.31977 -11.26019 -11.15500 -10.94464 -10.91397 -10.76158 -10.58083 -10.39750 -10.37425 -10.23590 -10.02702 -9.25471 -8.61331 -8.54056 -8.03506 -7.95438 -6.49854 -3.98993 0.44671 0.91531 1.97156 2.88545 3.10487 3.22487 3.26690 3.56930 3.81292 3.98257 4.01742 4.12697 4.46358 4.63599 4.71822 4.77975 4.84985 4.90920 4.94477 5.10592 5.14315 5.21687 5.26637 5.32069 5.38738 5.44395 5.56218 5.65746 5.74083 5.83277 5.91520 5.94070 5.98345 6.02891 6.14380 6.14939 6.22785 6.32848 6.43302 6.48133 6.51506 6.66601 6.67032 6.74299 6.93205 7.47942 7.92361 8.29652 8.73769 9.02111 9.21451 9.76433 10.56439 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.002286 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.980108 B =12245.771676 C =12541.669109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.246 3.754 3 C 0.222 3.778 4 N -0.447 5.447 5 C -0.313 4.313 6 H 0.108 0.892 7 C 0.031 3.969 8 N -0.879 5.879 9 Si 0.927 3.073 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.456 3.544 14 O -0.573 6.573 15 C -0.136 4.136 16 C -0.092 4.092 17 C -0.086 4.086 18 C -0.067 4.067 19 C -0.105 4.105 20 C -0.110 4.110 21 C -0.058 4.058 22 C -0.106 4.106 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.105 4.105 26 C -0.048 4.048 27 C -0.107 4.107 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.273 0.727 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 -18.992 8.233 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.072 4.072 3 C 0.094 3.906 4 N -0.167 5.167 5 C -0.440 4.440 6 H 0.126 0.874 7 C -0.173 4.173 8 N -0.518 5.518 9 Si 0.753 3.247 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.245 3.755 14 O -0.456 6.456 15 C -0.177 4.177 16 C -0.130 4.130 17 C -0.123 4.123 18 C -0.067 4.067 19 C -0.123 4.123 20 C -0.128 4.128 21 C -0.058 4.058 22 C -0.124 4.124 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.123 4.123 26 C -0.048 4.048 27 C -0.125 4.125 28 H 0.144 0.856 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.046 -18.662 8.628 20.662 hybrid contribution 0.591 1.057 -0.261 1.239 sum 2.637 -17.605 8.367 19.670 Atomic orbital electron populations 1.80890 1.13641 1.12338 1.08569 1.29341 0.95400 0.89935 0.92512 1.18729 0.81568 0.99808 0.90487 1.43679 1.56832 1.08998 1.07227 1.19726 1.29932 0.81439 1.12913 0.87450 1.25267 0.95021 0.99762 0.97224 1.69862 1.19908 1.36950 1.25056 0.85905 0.79013 0.80780 0.78955 1.20166 1.21159 1.19374 1.20207 0.83553 0.87669 0.84115 1.90547 1.50120 1.79136 1.25808 1.21639 1.02370 0.94544 0.99117 1.21240 1.02879 0.91740 0.97120 1.20766 1.02425 0.95444 0.93691 1.19683 0.93465 0.96946 0.96634 1.20826 0.96728 0.97283 0.97471 1.20992 0.98218 0.99765 0.93791 1.18101 0.93701 0.98828 0.95132 1.21011 0.99192 0.98878 0.93295 1.20812 0.93508 1.00302 0.99495 1.20826 0.97304 0.98391 0.97420 1.21067 0.98471 0.99004 0.93756 1.18104 0.93516 0.98167 0.94998 1.20943 0.99558 0.99139 0.92890 0.85592 0.89816 0.91679 0.90014 0.90391 0.91333 0.91158 0.90783 0.90919 0.85754 0.85673 0.85797 0.86239 0.86179 0.85622 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.15 18.54 42.15 0.78 -10.37 16 2 C 0.25 5.36 12.95 -20.76 -0.27 5.09 16 3 C 0.22 4.30 4.91 -6.83 -0.03 4.26 16 4 N -0.45 -10.30 2.60 -117.93 -0.31 -10.61 16 5 C -0.31 -8.05 9.32 -14.93 -0.14 -8.18 16 6 H 0.11 2.94 7.39 -52.48 -0.39 2.55 16 7 C 0.03 0.75 4.87 -17.47 -0.09 0.67 16 8 N -0.88 -22.14 9.48 55.50 0.53 -21.61 16 9 Si 0.93 19.66 29.60 -169.99 -5.03 14.62 16 10 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.46 10.12 7.57 -10.99 -0.08 10.04 16 14 O -0.57 -14.91 15.63 5.54 0.09 -14.82 16 15 C -0.14 -2.22 4.30 -27.89 -0.12 -2.34 16 16 C -0.09 -1.38 4.49 -26.73 -0.12 -1.50 16 17 C -0.09 -1.00 5.31 -27.88 -0.15 -1.15 16 18 C -0.07 -0.81 5.10 -104.97 -0.54 -1.35 16 19 C -0.11 -1.17 9.59 -39.93 -0.38 -1.55 16 20 C -0.11 -1.17 9.77 -39.48 -0.39 -1.55 16 21 C -0.06 -0.67 5.74 -106.83 -0.61 -1.28 16 22 C -0.11 -1.03 9.77 -39.49 -0.39 -1.41 16 23 C -0.12 -1.10 9.95 -39.93 -0.40 -1.50 16 24 C -0.12 -1.13 9.95 -39.93 -0.40 -1.53 16 25 C -0.11 -1.11 9.77 -39.48 -0.39 -1.50 16 26 C -0.05 -0.58 5.74 -106.83 -0.61 -1.20 16 27 C -0.11 -1.31 9.37 -39.49 -0.37 -1.68 16 28 H 0.13 2.51 6.46 -51.93 -0.34 2.18 16 29 H 0.08 1.21 6.68 -51.93 -0.35 0.86 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.08 1.08 7.41 -51.93 -0.39 0.69 16 32 H 0.08 1.25 7.51 -51.93 -0.39 0.86 16 33 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -31.95 368.14 -9.48 -41.44 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.62 Total: 3.46 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -5.46 Total: -7.66 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 1.00 Total: -42.59 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.09 Total: -14.82 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.95 -9.48 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180148584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.333 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds