Wall clock time and date at job start Tue Mar 31 2020 13:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86800 * 119.99810 * 2 1 4 4 H 1.48497 * 109.47186 * 240.00189 * 3 2 1 5 5 H 1.48496 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46908 * 120.00303 * 3 2 1 7 7 C 1.39890 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99546 * 196.81807 * 7 2 1 9 9 C 1.41151 * 120.00557 * 16.81691 * 7 2 1 10 10 C 1.40868 * 120.16660 * 205.35942 * 9 7 2 11 11 C 1.36377 * 119.82909 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.16772 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83077 * 179.97438 * 12 11 10 14 14 C 1.34769 * 119.99879 * 34.47565 * 13 12 11 15 15 O 1.21580 * 120.00221 * 5.14037 * 14 13 12 16 16 N 1.34779 * 120.00008 * 185.14594 * 14 13 12 17 17 C 1.46501 * 120.00242 * 180.02562 * 16 14 13 18 18 C 1.54349 * 110.82016 * 267.96655 * 17 16 14 19 19 C 1.51364 * 105.17018 * 215.42472 * 18 17 16 20 20 C 1.38497 * 130.39003 * 197.18976 * 19 18 17 21 21 C 1.38110 * 120.21485 * 180.02562 * 20 19 18 22 22 C 1.38254 * 119.93231 * 359.97438 * 21 20 19 23 23 C 1.38100 * 119.93565 * 359.97438 * 22 21 20 24 24 C 1.38217 * 109.75982 * 17.19100 * 19 18 17 25 25 C 1.51366 * 109.75561 * 359.97438 * 24 19 18 26 26 C 1.39480 * 120.33306 * 0.27445 * 12 11 10 27 27 C 1.36377 * 120.16779 * 359.44078 * 26 12 11 28 28 H 0.97002 * 120.00366 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.08171 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.91708 * 179.97438 * 11 10 9 31 31 H 0.96996 * 120.00063 * 214.47098 * 13 12 11 32 32 H 0.96996 * 119.99649 * 359.97438 * 16 14 13 33 33 H 1.09005 * 110.72892 * 31.58508 * 17 16 14 34 34 H 1.08999 * 110.30102 * 334.34827 * 18 17 16 35 35 H 1.08999 * 110.30311 * 96.50262 * 18 17 16 36 36 H 1.08005 * 119.89460 * 0.02562 * 20 19 18 37 37 H 1.07994 * 120.02902 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.02928 * 179.97438 * 22 21 20 39 39 H 1.08007 * 119.88864 * 180.02562 * 23 22 21 40 40 H 1.09000 * 110.30136 * 223.88353 * 25 24 19 41 41 H 1.09004 * 110.38921 * 101.78338 * 25 24 19 42 42 H 1.07998 * 119.91245 * 179.70324 * 26 12 11 43 43 H 1.07995 * 120.08635 * 180.27870 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0536 -1.2316 0.2701 9 6 1.3478 -2.4077 -0.3547 10 6 1.8186 -3.6453 0.1259 11 6 1.1756 -4.7968 -0.2210 12 6 0.0547 -4.7513 -1.0500 13 7 -0.5961 -5.9313 -1.4003 14 6 -0.6676 -6.9486 -0.5191 15 8 -0.2469 -6.8034 0.6123 16 7 -1.2052 -8.1268 -0.8922 17 6 -1.2834 -9.2324 0.0658 18 6 -0.0351 -10.1347 -0.0347 19 6 -0.5397 -11.5388 0.2206 20 6 0.1480 -12.6911 0.5632 21 6 -0.5333 -13.8782 0.7478 22 6 -1.9064 -13.9171 0.5908 23 6 -2.5939 -12.7689 0.2503 24 6 -1.9124 -11.5778 0.0637 25 6 -2.4242 -10.2024 -0.3072 26 6 -0.4136 -3.5302 -1.5349 27 6 0.2155 -2.3698 -1.1919 28 1 -0.4851 0.8400 0.0004 29 1 2.6871 -3.6821 0.7668 30 1 1.5356 -5.7464 0.1463 31 1 -0.9981 -6.0212 -2.2784 32 1 -1.5411 -8.2425 -1.7948 33 1 -1.4120 -8.8554 1.0805 34 1 0.4025 -10.0653 -1.0306 35 1 0.6973 -9.8527 0.7217 36 1 1.2206 -12.6613 0.6864 37 1 0.0060 -14.7750 1.0145 38 1 -2.4407 -14.8447 0.7344 39 1 -3.6666 -12.8001 0.1282 40 1 -3.3230 -9.9670 0.2627 41 1 -2.6305 -10.1495 -1.3763 42 1 -1.2792 -3.5033 -2.1802 43 1 -0.1510 -1.4247 -1.5644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184173153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:42 Heat of formation + Delta-G solvation = 0.015892 kcal Electronic energy + Delta-G solvation = -25060.647864 eV Core-core repulsion = 21455.155790 eV Total energy + Delta-G solvation = -3605.492074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65910 -40.80009 -39.22497 -37.26069 -36.08264 -34.86636 -33.91143 -32.34094 -31.45811 -30.75269 -29.02275 -28.28439 -26.68811 -23.96203 -23.15888 -22.61957 -21.96447 -21.79965 -21.53697 -19.53031 -19.13281 -18.22550 -17.26662 -17.05006 -16.77835 -16.52002 -16.22666 -15.79872 -15.65223 -15.41218 -14.89900 -14.56337 -14.26938 -14.19671 -13.96344 -13.85467 -13.80992 -13.65774 -13.40778 -13.18841 -12.90272 -12.74805 -12.56807 -12.45909 -12.14163 -12.10798 -11.80656 -11.68285 -11.42979 -11.21956 -11.01324 -10.69147 -10.13953 -9.71472 -9.44952 -9.43403 -8.80248 -8.57272 -6.24927 0.43217 0.48063 0.87499 1.16143 1.40073 1.49440 1.53249 1.74283 2.19511 2.24000 2.77950 2.84554 3.32153 3.41102 3.65398 3.75224 4.05202 4.08326 4.14985 4.19948 4.29521 4.40985 4.51518 4.63065 4.69258 4.71002 4.85926 4.87230 4.90660 4.96567 5.12527 5.17371 5.18305 5.21791 5.32278 5.46105 5.48880 5.60327 5.62757 5.66391 5.70936 5.82074 6.05611 6.11523 6.12827 6.26424 6.40317 6.67701 6.95237 7.02336 7.18371 7.68223 8.35722 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.042657 B = 0.002011 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.234641 B =13923.048152 C =14300.162436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.497 4.497 8 H 0.074 0.926 9 C 0.072 3.928 10 C -0.233 4.233 11 C -0.088 4.088 12 C 0.030 3.970 13 N -0.657 5.657 14 C 0.694 3.306 15 O -0.624 6.624 16 N -0.718 5.718 17 C 0.165 3.835 18 C -0.093 4.093 19 C -0.109 4.109 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.112 4.112 24 C -0.106 4.106 25 C -0.076 4.076 26 C -0.113 4.113 27 C -0.170 4.170 28 H 0.289 0.711 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.415 0.585 32 H 0.414 0.586 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.125 0.875 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.249 -22.955 -5.161 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.527 4.527 8 H 0.092 0.908 9 C 0.070 3.930 10 C -0.253 4.253 11 C -0.108 4.108 12 C -0.064 4.064 13 N -0.305 5.305 14 C 0.395 3.605 15 O -0.504 6.504 16 N -0.375 5.375 17 C 0.059 3.941 18 C -0.131 4.131 19 C -0.110 4.110 20 C -0.141 4.141 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.129 4.129 24 C -0.107 4.107 25 C -0.113 4.113 26 C -0.133 4.133 27 C -0.190 4.190 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.252 0.748 32 H 0.252 0.748 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.143 0.857 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.100 -22.706 -4.148 24.149 hybrid contribution 0.338 0.776 -0.360 0.920 sum -6.762 -21.930 -4.508 23.387 Atomic orbital electron populations 1.69883 1.08893 1.30635 1.35763 1.26758 0.95564 1.04454 0.91292 0.85222 0.78738 0.75552 0.79983 1.18284 1.19037 1.18759 1.19739 0.97952 0.92420 1.42552 0.90830 1.17980 0.92557 0.92731 0.89780 1.20770 1.04290 0.93135 1.07095 1.20341 0.94612 0.97059 0.98798 1.16969 0.96417 0.84828 1.08193 1.41864 1.58703 1.12645 1.17278 1.16178 0.79131 0.81168 0.84064 1.90910 1.55431 1.83046 1.21061 1.44819 1.66027 1.10111 1.16505 1.21314 0.94841 0.84924 0.93003 1.21430 0.98340 0.90832 1.02509 1.20593 0.95132 0.94868 1.00389 1.20891 1.00528 0.92190 1.00479 1.21360 0.95076 0.97869 0.99951 1.21402 0.94486 0.98912 0.99439 1.20914 1.00928 0.91313 0.99782 1.20593 0.94101 0.95533 1.00425 1.21204 0.97440 0.88988 1.03659 1.20459 0.99721 0.90814 1.02324 1.20898 0.99711 0.96983 1.01376 0.90055 0.88962 0.88267 0.74848 0.74815 0.90487 0.89449 0.92139 0.85743 0.83852 0.83420 0.84124 0.88873 0.87402 0.85729 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.65 10.95 21.82 0.24 -43.41 16 2 C 0.03 1.74 5.15 85.23 0.44 2.18 16 3 Si 0.98 38.73 29.59 68.60 2.03 40.76 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.50 -27.63 9.04 23.39 0.21 -27.42 16 8 H 0.07 3.96 7.90 -2.91 -0.02 3.94 16 9 C 0.07 4.05 5.57 -21.28 -0.12 3.93 16 10 C -0.23 -12.51 9.74 22.48 0.22 -12.30 16 11 C -0.09 -4.38 8.57 22.14 0.19 -4.19 16 12 C 0.03 1.34 6.27 38.56 0.24 1.58 16 13 N -0.66 -22.05 5.31 -316.79 -1.68 -23.73 16 14 C 0.69 23.87 8.28 179.06 1.48 25.35 16 15 O -0.62 -28.22 13.71 -3.97 -0.05 -28.27 16 16 N -0.72 -16.35 5.14 -453.48 -2.33 -18.68 16 17 C 0.17 3.70 3.45 45.90 0.16 3.85 16 18 C -0.09 -2.08 6.49 30.52 0.20 -1.89 16 19 C -0.11 -2.23 6.14 -19.60 -0.12 -2.35 16 20 C -0.12 -2.25 10.04 22.30 0.22 -2.03 16 21 C -0.12 -1.83 10.05 22.24 0.22 -1.61 16 22 C -0.12 -1.66 10.05 22.24 0.22 -1.43 16 23 C -0.11 -1.62 10.04 22.30 0.22 -1.40 16 24 C -0.11 -1.87 6.14 -19.60 -0.12 -1.99 16 25 C -0.08 -1.16 6.48 30.51 0.20 -0.96 16 26 C -0.11 -5.11 9.89 22.13 0.22 -4.89 16 27 C -0.17 -8.94 8.63 22.48 0.19 -8.74 16 28 H 0.29 13.75 8.30 -92.71 -0.77 12.99 16 29 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 30 H 0.10 4.94 6.47 -2.91 -0.02 4.93 16 31 H 0.41 10.00 8.83 -92.71 -0.82 9.18 16 32 H 0.41 6.08 8.44 -92.71 -0.78 5.30 16 33 H 0.08 2.19 7.54 -2.38 -0.02 2.17 16 34 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.12 2.04 8.06 -2.91 -0.02 2.01 16 37 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 39 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.11 1.18 7.80 -2.38 -0.02 1.16 16 42 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.11 5.99 6.18 -2.91 -0.02 5.97 16 Total: -1.00 -71.65 360.21 1.94 -69.71 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.55 Total: 37.93 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 4.29 Total: -34.30 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -3.78 Total: -85.83 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.05 Total: -28.27 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -71.65 1.94 -69.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184173153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.724 kcal (2) G-P(sol) polarization free energy of solvation -71.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds