Wall clock time and date at job start Tue Mar 31 2020 13:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86803 * 119.99758 * 2 1 4 4 H 1.48495 * 109.47398 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47032 * 299.99914 * 3 2 1 6 6 H 1.48503 * 109.47210 * 59.99750 * 3 2 1 7 7 C 1.38945 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99967 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00028 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00119 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00125 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47361 * 179.97438 * 12 10 9 14 14 C 1.47901 * 110.99879 * 290.12096 * 13 12 10 15 15 C 1.54598 * 102.60597 * 265.40388 * 14 13 12 16 16 C 1.51565 * 102.81340 * 334.47088 * 15 14 13 17 17 C 1.38796 * 108.00723 * 16.01821 * 16 15 14 18 18 C 1.39460 * 119.15644 * 180.49215 * 17 16 15 19 19 C 1.38019 * 120.45891 * 359.74491 * 18 17 16 20 20 C 1.38041 * 120.40277 * 359.79107 * 19 18 17 21 21 C 1.38964 * 131.58691 * 196.23613 * 16 15 14 22 22 C 1.48403 * 120.08769 * 359.59090 * 21 16 15 23 23 C 1.39331 * 120.12040 * 309.96115 * 22 21 16 24 24 C 1.38023 * 119.87751 * 180.02562 * 23 22 21 25 25 C 1.38325 * 120.11867 * 359.97374 * 24 23 22 26 26 C 1.38316 * 120.24405 * 0.02562 * 25 24 23 27 27 C 1.38015 * 120.12267 * 0.02562 * 26 25 24 28 28 H 0.96992 * 120.00455 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00022 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47493 * 59.99337 * 12 10 9 31 31 H 1.09004 * 109.46614 * 299.99720 * 12 10 9 32 32 H 1.08998 * 110.78119 * 147.12140 * 14 13 12 33 33 H 1.09005 * 110.78171 * 23.68504 * 14 13 12 34 34 H 1.09001 * 110.74706 * 216.14490 * 15 14 13 35 35 H 1.08993 * 110.74818 * 92.79860 * 15 14 13 36 36 H 1.08001 * 119.76963 * 179.77060 * 18 17 16 37 37 H 1.08001 * 119.79776 * 180.02562 * 19 18 17 38 38 H 1.08007 * 120.13048 * 180.40521 * 20 19 18 39 39 H 1.07993 * 120.06321 * 0.03594 * 23 22 21 40 40 H 1.07999 * 119.94158 * 180.25070 * 24 23 22 41 41 H 1.08006 * 119.87452 * 180.02562 * 25 24 23 42 42 H 1.08005 * 119.93725 * 179.97438 * 26 25 24 43 43 H 1.08008 * 120.06402 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3466 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3236 -2.3906 0.0016 10 6 1.9975 -3.5578 0.0026 11 8 3.2104 -3.5577 0.0031 12 6 1.2441 -4.8629 0.0032 13 7 2.1988 -5.9794 0.0037 14 6 2.9042 -6.0742 -1.2927 15 6 2.0539 -7.1091 -2.0647 16 6 1.4153 -7.9164 -0.9522 17 6 1.5457 -7.1982 0.2283 18 6 1.0420 -7.7382 1.4113 19 6 0.4169 -8.9687 1.4082 20 6 0.2785 -9.6790 0.2327 21 6 0.7852 -9.1549 -0.9560 22 6 0.6463 -9.9151 -2.2230 23 6 0.1338 -9.2927 -3.3593 24 6 0.0064 -10.0046 -4.5348 25 6 0.3869 -11.3335 -4.5862 26 6 0.8963 -11.9563 -3.4612 27 6 1.0271 -11.2542 -2.2802 28 1 -0.4850 0.8399 0.0004 29 1 0.3535 -2.3907 0.0016 30 1 0.6177 -4.9213 -0.8869 31 1 0.6172 -4.9200 0.8931 32 1 3.9226 -6.4370 -1.1533 33 1 2.9021 -5.1122 -1.8054 34 1 2.6870 -7.7422 -2.6865 35 1 1.2932 -6.6120 -2.6665 36 1 1.1413 -7.1895 2.3363 37 1 0.0303 -9.3767 2.3305 38 1 -0.2172 -10.6386 0.2342 39 1 -0.1630 -8.2551 -3.3204 40 1 -0.3870 -9.5220 -5.4173 41 1 0.2858 -11.8867 -5.5083 42 1 1.1915 -12.9943 -3.5068 43 1 1.4246 -11.7417 -1.4021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184519903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:43 Heat of formation + Delta-G solvation = 14.556132 kcal Electronic energy + Delta-G solvation = -25795.147492 eV Core-core repulsion = 22190.285930 eV Total energy + Delta-G solvation = -3604.861562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.01796 -40.24482 -39.59157 -37.56532 -35.94055 -34.07008 -33.32815 -32.26954 -31.72666 -30.30342 -29.38045 -28.27745 -26.22143 -24.54859 -23.50021 -23.14087 -22.03976 -21.56961 -20.78627 -19.88581 -18.15894 -17.70846 -17.36643 -17.12911 -16.66400 -16.34528 -16.25962 -15.91063 -15.66843 -15.54100 -15.45848 -14.70089 -14.46623 -14.30621 -14.20469 -13.88062 -13.66428 -13.54687 -13.45965 -13.25013 -13.07816 -12.80356 -12.56856 -12.47324 -12.42045 -12.17322 -12.12372 -11.91435 -11.66075 -11.51971 -10.78651 -10.24924 -10.05126 -10.02722 -9.83133 -9.19897 -8.86932 -8.48613 -5.97662 -0.03541 0.34002 0.51593 0.75568 1.35214 1.41003 1.55277 1.99224 2.25344 2.51391 2.73305 2.95268 3.17106 3.20551 3.55221 3.70387 3.78324 3.97991 4.04559 4.14218 4.16500 4.21288 4.26578 4.30540 4.40598 4.45814 4.51807 4.54178 4.59231 4.67391 4.77072 4.81992 4.92777 5.03799 5.11280 5.16419 5.38818 5.39251 5.41406 5.50759 5.55463 5.63150 5.71541 5.81622 5.83068 5.99512 6.11124 6.30827 6.56721 7.09838 7.51449 8.06573 8.69095 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.002656 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.231711 B =10539.215735 C =11162.033859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.331 4.331 8 H 0.080 0.920 9 N -0.571 5.571 10 C 0.443 3.557 11 O -0.613 6.613 12 C 0.066 3.934 13 N -0.489 5.489 14 C 0.063 3.937 15 C -0.097 4.097 16 C -0.133 4.133 17 C 0.073 3.927 18 C -0.122 4.122 19 C -0.095 4.095 20 C -0.119 4.119 21 C -0.026 4.026 22 C -0.058 4.058 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.114 4.114 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.115 0.885 40 H 0.138 0.862 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.480 -24.511 -5.713 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.209 5.209 10 C 0.230 3.770 11 O -0.499 6.499 12 C -0.063 4.063 13 N -0.206 5.206 14 C -0.064 4.064 15 C -0.135 4.135 16 C -0.136 4.136 17 C -0.023 4.023 18 C -0.142 4.142 19 C -0.113 4.113 20 C -0.138 4.138 21 C -0.027 4.027 22 C -0.058 4.058 23 C -0.137 4.137 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.132 4.132 28 H 0.088 0.912 29 H 0.230 0.770 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.144 0.856 37 H 0.177 0.823 38 H 0.167 0.833 39 H 0.133 0.867 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.425 -24.165 -5.309 24.977 hybrid contribution -0.464 1.250 -0.418 1.398 sum -3.889 -22.914 -5.727 23.937 Atomic orbital electron populations 1.69679 1.06854 1.29309 1.50267 1.26054 0.96546 1.02426 0.96212 0.84864 0.78019 0.77034 0.78376 1.19796 1.19490 1.19581 1.19690 0.92683 0.83801 1.49876 0.90241 1.41908 1.09311 1.04622 1.65014 1.20527 0.88225 0.85638 0.82640 1.90501 1.15459 1.87740 1.56208 1.21773 0.93072 0.87995 1.03507 1.59630 1.25760 1.01164 1.34084 1.22986 0.97967 0.98887 0.86564 1.21640 0.99005 0.96401 0.96496 1.21072 1.01289 0.96255 0.94956 1.19761 0.96515 0.91228 0.94790 1.20816 1.00267 0.97059 0.96073 1.21150 0.97655 0.93114 0.99373 1.21392 1.00474 1.00974 0.90917 1.18298 0.98431 0.92256 0.93690 1.18868 1.00333 0.94113 0.92446 1.21324 0.99632 0.99946 0.92843 1.21362 1.00074 0.95172 0.97825 1.21546 0.98223 0.94867 0.99468 1.21413 0.99111 1.01011 0.92462 1.21415 0.99658 0.92874 0.99254 0.91240 0.77031 0.91143 0.87647 0.90019 0.91280 0.88748 0.89813 0.85585 0.82337 0.83252 0.86712 0.84451 0.83771 0.83568 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.95 13.05 21.66 0.28 -49.66 16 2 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 3 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 8 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 9 N -0.57 -29.86 5.29 -306.98 -1.62 -31.48 16 10 C 0.44 21.74 7.23 87.66 0.63 22.37 16 11 O -0.61 -34.65 14.79 -3.07 -0.05 -34.70 16 12 C 0.07 2.48 5.24 85.56 0.45 2.93 16 13 N -0.49 -17.91 4.73 -693.03 -3.28 -21.19 16 14 C 0.06 2.16 6.16 86.65 0.53 2.69 16 15 C -0.10 -2.66 5.79 30.67 0.18 -2.48 16 16 C -0.13 -3.68 5.94 -19.28 -0.11 -3.80 16 17 C 0.07 2.25 5.53 38.25 0.21 2.46 16 18 C -0.12 -3.19 10.06 22.51 0.23 -2.97 16 19 C -0.09 -1.88 10.01 22.17 0.22 -1.66 16 20 C -0.12 -2.35 9.53 22.51 0.21 -2.13 16 21 C -0.03 -0.61 5.47 -20.10 -0.11 -0.72 16 22 C -0.06 -1.20 5.37 -20.04 -0.11 -1.31 16 23 C -0.12 -2.43 8.91 22.48 0.20 -2.23 16 24 C -0.13 -2.09 10.03 22.24 0.22 -1.87 16 25 C -0.12 -1.73 10.04 22.31 0.22 -1.50 16 26 C -0.12 -1.72 10.03 22.24 0.22 -1.50 16 27 C -0.11 -1.96 9.52 22.48 0.21 -1.75 16 28 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 29 H 0.40 19.71 7.90 -92.71 -0.73 18.97 16 30 H 0.07 2.43 8.03 -2.38 -0.02 2.41 16 31 H 0.11 3.65 8.06 -2.38 -0.02 3.63 16 32 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.07 2.66 6.72 -2.38 -0.02 2.65 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 2.17 7.79 -2.39 -0.02 2.16 16 36 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 37 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.15 2.13 8.05 -2.91 -0.02 2.11 16 39 H 0.11 2.41 7.44 -2.91 -0.02 2.39 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 43 H 0.13 1.91 8.05 -2.91 -0.02 1.89 16 Total: -1.00 -69.44 362.87 2.36 -67.08 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: 0.30 Total: 36.56 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 4.70 Total: -11.82 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -4.62 Total: -102.34 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.05 Total: -34.70 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -69.44 2.36 -67.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184519903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.639 kcal (2) G-P(sol) polarization free energy of solvation -69.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds