Wall clock time and date at job start Tue Mar 31 2020 13:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86805 * 120.00251 * 2 1 4 4 H 1.48501 * 109.47118 * 270.00303 * 3 2 1 5 5 H 1.48502 * 109.46832 * 30.00059 * 3 2 1 6 6 H 1.48499 * 109.47192 * 149.99624 * 3 2 1 7 7 C 1.40122 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00207 * 180.02562 * 7 2 1 9 9 C 1.46171 * 119.99599 * 0.02562 * 7 2 1 10 10 O 1.21743 * 120.00639 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99768 * 179.97438 * 9 7 2 12 12 C 1.39535 * 120.00066 * 185.27472 * 11 9 7 13 13 C 1.39038 * 120.08078 * 33.38582 * 12 11 9 14 14 C 1.38056 * 119.91331 * 180.02562 * 13 12 11 15 15 C 1.38331 * 120.08534 * 0.03022 * 14 13 12 16 16 C 1.50702 * 119.91837 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47108 * 89.99399 * 16 15 14 18 18 C 1.47911 * 111.00246 * 309.93844 * 17 16 15 19 19 C 1.54603 * 102.62316 * 149.18170 * 18 17 16 20 20 C 1.51570 * 102.84879 * 334.52831 * 19 18 17 21 21 C 1.37921 * 131.55938 * 196.07855 * 20 19 18 22 22 C 1.38306 * 120.08257 * 179.33676 * 21 20 19 23 23 C 1.38304 * 119.88333 * 359.97438 * 22 21 20 24 24 C 1.37912 * 120.26237 * 0.14619 * 23 22 21 25 25 C 1.38956 * 107.95943 * 15.73923 * 20 19 18 26 26 C 1.38329 * 120.16918 * 0.22523 * 15 14 13 27 27 C 1.38072 * 120.08052 * 359.49412 * 26 15 14 28 28 H 0.97001 * 119.99724 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00399 * 5.27271 * 11 9 7 30 30 H 1.07996 * 120.03913 * 0.02562 * 13 12 11 31 31 H 1.07998 * 119.96018 * 180.02562 * 14 13 12 32 32 H 1.08999 * 109.46821 * 330.00062 * 16 15 14 33 33 H 1.08994 * 109.47253 * 209.99561 * 16 15 14 34 34 H 1.08998 * 110.78017 * 30.89646 * 18 17 16 35 35 H 1.09001 * 110.94392 * 267.53935 * 18 17 16 36 36 H 1.08996 * 110.73761 * 216.18350 * 19 18 17 37 37 H 1.09000 * 110.73364 * 92.86591 * 19 18 17 38 38 H 1.08001 * 119.96251 * 359.36417 * 21 20 19 39 39 H 1.07996 * 120.06091 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.87158 * 180.16365 * 23 22 21 41 41 H 1.07998 * 119.90169 * 180.02562 * 24 23 22 42 42 H 1.07994 * 119.96434 * 179.72746 * 26 15 14 43 43 H 1.08000 * 120.04160 * 180.25493 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4379 2.6527 0.7001 6 1 3.5380 1.4402 0.7001 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2135 0.0010 9 6 1.2761 -2.4793 0.0005 10 8 0.0587 -2.4794 0.0005 11 7 1.9500 -3.6465 0.0005 12 6 1.2568 -4.8524 -0.1105 13 6 0.0951 -4.9209 -0.8714 14 6 -0.5884 -6.1156 -0.9786 15 6 -0.1191 -7.2435 -0.3296 16 6 -0.8685 -8.5456 -0.4486 17 7 -0.3614 -9.2986 -1.6035 18 6 -0.3200 -8.4490 -2.8136 19 6 0.8756 -9.0364 -3.5981 20 6 1.7214 -9.6604 -2.5061 21 6 3.0339 -10.0841 -2.4949 22 6 3.5805 -10.6170 -1.3416 23 6 2.8087 -10.7240 -0.1989 24 6 1.4951 -10.3041 -0.2056 25 6 0.9357 -9.7696 -1.3653 26 6 1.0334 -7.1781 0.4327 27 6 1.7255 -5.9882 0.5399 28 1 -0.4850 0.8401 0.0004 29 1 2.9169 -3.6484 0.0777 30 1 -0.2721 -4.0406 -1.3780 31 1 -1.4905 -6.1697 -1.5697 32 1 -1.9306 -8.3423 -0.5854 33 1 -0.7246 -9.1319 0.4589 34 1 -0.1350 -7.4079 -2.5490 35 1 -1.2423 -8.5425 -3.3870 36 1 1.4266 -8.2473 -4.1097 37 1 0.5383 -9.7940 -4.3055 38 1 3.6358 -9.9992 -3.3876 39 1 4.6081 -10.9490 -1.3332 40 1 3.2365 -11.1377 0.7023 41 1 0.8978 -10.3900 0.6901 42 1 1.3943 -8.0596 0.9415 43 1 2.6275 -5.9388 1.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184899277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:43 Heat of formation + Delta-G solvation = 31.404019 kcal Electronic energy + Delta-G solvation = -26349.478641 eV Core-core repulsion = 22745.347658 eV Total energy + Delta-G solvation = -3604.130982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02175 -39.15534 -37.43901 -36.34681 -33.85620 -32.77336 -32.40303 -30.62772 -30.20550 -28.91603 -28.59445 -26.54174 -24.81494 -23.11928 -22.44171 -21.69420 -21.22339 -20.46400 -19.62716 -17.59069 -16.83556 -16.35153 -16.13317 -15.74655 -15.57461 -15.47905 -14.75047 -14.67833 -14.10647 -13.87168 -13.58509 -13.45857 -13.13944 -12.87498 -12.74328 -12.65758 -12.41245 -12.28309 -11.78389 -11.72427 -11.60274 -11.38692 -11.34188 -11.19661 -11.11079 -10.88074 -10.70827 -10.53374 -10.37432 -9.87999 -9.30468 -8.92100 -8.80146 -8.40757 -7.81700 -7.69265 -7.09440 -6.39295 -4.86819 1.35561 1.38146 1.85352 1.97360 3.04045 3.11272 3.14615 3.59748 3.92854 3.95565 4.17769 4.48163 4.54696 4.59678 4.65194 4.92144 4.99168 5.06024 5.12570 5.26311 5.33126 5.39405 5.44965 5.49116 5.52794 5.61829 5.71495 5.78264 5.83088 5.86810 5.93517 5.98242 6.18351 6.26973 6.32046 6.43424 6.52237 6.53646 6.66543 6.80920 6.95392 7.02739 7.07134 7.23733 7.24702 7.37086 7.69208 8.01110 8.13112 8.80508 9.16419 10.33485 10.51900 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021570 B = 0.002909 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.792966 B = 9623.379308 C = 9986.577331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.542 3.458 10 O -0.559 6.559 11 N -0.700 5.700 12 C 0.202 3.798 13 C -0.132 4.132 14 C -0.087 4.087 15 C -0.178 4.178 16 C 0.094 3.906 17 N -0.470 5.470 18 C 0.028 3.972 19 C -0.083 4.083 20 C -0.140 4.140 21 C -0.082 4.082 22 C -0.149 4.149 23 C -0.096 4.096 24 C -0.139 4.139 25 C 0.112 3.888 26 C -0.078 4.078 27 C -0.178 4.178 28 H 0.272 0.728 29 H 0.393 0.607 30 H 0.138 0.862 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 -18.363 -3.643 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.349 3.651 10 O -0.441 6.441 11 N -0.343 5.343 12 C 0.103 3.897 13 C -0.153 4.153 14 C -0.106 4.106 15 C -0.181 4.181 16 C -0.031 4.031 17 N -0.182 5.182 18 C -0.097 4.097 19 C -0.121 4.121 20 C -0.142 4.142 21 C -0.100 4.100 22 C -0.168 4.168 23 C -0.115 4.115 24 C -0.160 4.160 25 C 0.014 3.986 26 C -0.097 4.097 27 C -0.200 4.200 28 H 0.083 0.917 29 H 0.226 0.774 30 H 0.156 0.844 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.419 -18.508 -3.735 19.035 hybrid contribution 1.412 1.390 0.297 2.003 sum 3.831 -17.118 -3.438 17.875 Atomic orbital electron populations 1.69982 1.07168 1.27844 1.33673 1.25747 0.94713 1.00544 0.92491 0.86277 0.80134 0.80854 0.79022 1.19536 1.20259 1.18753 1.20864 0.93833 0.89024 1.53731 0.90995 1.18394 0.87497 0.82089 0.77133 1.90641 1.13642 1.86065 1.53711 1.44215 1.09690 1.04464 1.75930 1.18029 0.93206 0.86417 0.92098 1.21308 0.96398 0.98012 0.99544 1.20811 0.98997 0.91956 0.98875 1.20018 0.98727 0.95724 1.03601 1.21201 0.98813 0.90399 0.92710 1.60993 1.18410 1.33576 1.05231 1.23564 0.98922 0.97928 0.89324 1.21271 0.94786 0.99671 0.96324 1.20509 0.94181 1.03559 0.95993 1.20360 0.93489 0.97975 0.98225 1.20922 0.99864 1.02847 0.93202 1.20828 0.93443 0.99056 0.98175 1.20426 0.95616 1.03577 0.96380 1.19610 0.88341 0.96575 0.94123 1.20663 0.94366 0.96724 0.97943 1.20861 1.02738 0.93273 1.03135 0.91694 0.77373 0.84405 0.86697 0.89552 0.90004 0.89603 0.89150 0.90223 0.89993 0.86458 0.86187 0.86027 0.86351 0.86884 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.79 11.82 55.55 0.66 -21.13 16 2 C 0.09 2.31 5.50 -17.35 -0.10 2.21 16 3 Si 0.91 19.30 29.56 -169.99 -5.02 14.27 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.54 -14.56 9.54 -35.69 -0.34 -14.90 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 9 C 0.54 14.87 7.47 -13.08 -0.10 14.77 16 10 O -0.56 -17.20 12.70 5.15 0.07 -17.14 16 11 N -0.70 -15.65 5.32 -11.19 -0.06 -15.71 16 12 C 0.20 4.19 6.28 -83.76 -0.53 3.67 16 13 C -0.13 -2.74 8.65 -39.35 -0.34 -3.08 16 14 C -0.09 -1.47 7.37 -39.61 -0.29 -1.76 16 15 C -0.18 -2.70 4.14 -104.55 -0.43 -3.13 16 16 C 0.09 1.18 5.54 -4.97 -0.03 1.15 16 17 N -0.47 -5.93 5.29 -170.38 -0.90 -6.83 16 18 C 0.03 0.34 6.61 -2.43 -0.02 0.32 16 19 C -0.08 -0.93 7.04 -26.61 -0.19 -1.11 16 20 C -0.14 -1.75 6.23 -104.04 -0.65 -2.40 16 21 C -0.08 -0.93 10.03 -39.67 -0.40 -1.33 16 22 C -0.15 -1.56 10.06 -39.53 -0.40 -1.96 16 23 C -0.10 -1.01 10.02 -39.68 -0.40 -1.41 16 24 C -0.14 -1.63 7.76 -39.27 -0.30 -1.93 16 25 C 0.11 1.44 4.97 -83.41 -0.41 1.03 16 26 C -0.08 -1.22 8.86 -39.61 -0.35 -1.57 16 27 C -0.18 -3.13 9.97 -39.35 -0.39 -3.52 16 28 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 29 H 0.39 7.56 8.79 -40.82 -0.36 7.20 16 30 H 0.14 3.30 6.42 -52.49 -0.34 2.96 16 31 H 0.12 1.70 7.95 -52.49 -0.42 1.28 16 32 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.08 0.95 6.80 -51.93 -0.35 0.59 16 34 H 0.09 1.16 4.31 -51.93 -0.22 0.93 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.12 1.23 7.16 -52.49 -0.38 0.85 16 42 H 0.11 1.56 6.52 -52.49 -0.34 1.21 16 43 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -32.56 350.88 -10.97 -43.53 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.33 Total: 12.67 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -5.66 Total: -14.96 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.30 Total: -43.67 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.07 Total: -17.14 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.56 -10.97 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184899277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.937 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds