Wall clock time and date at job start Tue Mar 31 2020 13:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86805 * 120.00251 * 2 1 4 4 H 1.48501 * 109.47118 * 270.00303 * 3 2 1 5 5 H 1.48502 * 109.46832 * 30.00059 * 3 2 1 6 6 H 1.48499 * 109.47192 * 149.99624 * 3 2 1 7 7 C 1.40122 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00207 * 180.02562 * 7 2 1 9 9 C 1.46171 * 119.99599 * 0.02562 * 7 2 1 10 10 O 1.21743 * 120.00639 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99768 * 179.97438 * 9 7 2 12 12 C 1.39535 * 120.00066 * 185.27472 * 11 9 7 13 13 C 1.39038 * 120.08078 * 33.38582 * 12 11 9 14 14 C 1.38056 * 119.91331 * 180.02562 * 13 12 11 15 15 C 1.38331 * 120.08534 * 0.03022 * 14 13 12 16 16 C 1.50702 * 119.91837 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47108 * 89.99399 * 16 15 14 18 18 C 1.47911 * 111.00246 * 309.93844 * 17 16 15 19 19 C 1.54603 * 102.62316 * 149.18170 * 18 17 16 20 20 C 1.51570 * 102.84879 * 334.52831 * 19 18 17 21 21 C 1.37921 * 131.55938 * 196.07855 * 20 19 18 22 22 C 1.38306 * 120.08257 * 179.33676 * 21 20 19 23 23 C 1.38304 * 119.88333 * 359.97438 * 22 21 20 24 24 C 1.37912 * 120.26237 * 0.14619 * 23 22 21 25 25 C 1.38956 * 107.95943 * 15.73923 * 20 19 18 26 26 C 1.38329 * 120.16918 * 0.22523 * 15 14 13 27 27 C 1.38072 * 120.08052 * 359.49412 * 26 15 14 28 28 H 0.97001 * 119.99724 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00399 * 5.27271 * 11 9 7 30 30 H 1.07996 * 120.03913 * 0.02562 * 13 12 11 31 31 H 1.07998 * 119.96018 * 180.02562 * 14 13 12 32 32 H 1.08999 * 109.46821 * 330.00062 * 16 15 14 33 33 H 1.08994 * 109.47253 * 209.99561 * 16 15 14 34 34 H 1.08998 * 110.78017 * 30.89646 * 18 17 16 35 35 H 1.09001 * 110.94392 * 267.53935 * 18 17 16 36 36 H 1.08996 * 110.73761 * 216.18350 * 19 18 17 37 37 H 1.09000 * 110.73364 * 92.86591 * 19 18 17 38 38 H 1.08001 * 119.96251 * 359.36417 * 21 20 19 39 39 H 1.07996 * 120.06091 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.87158 * 180.16365 * 23 22 21 41 41 H 1.07998 * 119.90169 * 180.02562 * 24 23 22 42 42 H 1.07994 * 119.96434 * 179.72746 * 26 15 14 43 43 H 1.08000 * 120.04160 * 180.25493 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4379 2.6527 0.7001 6 1 3.5380 1.4402 0.7001 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2135 0.0010 9 6 1.2761 -2.4793 0.0005 10 8 0.0587 -2.4794 0.0005 11 7 1.9500 -3.6465 0.0005 12 6 1.2568 -4.8524 -0.1105 13 6 0.0951 -4.9209 -0.8714 14 6 -0.5884 -6.1156 -0.9786 15 6 -0.1191 -7.2435 -0.3296 16 6 -0.8685 -8.5456 -0.4486 17 7 -0.3614 -9.2986 -1.6035 18 6 -0.3200 -8.4490 -2.8136 19 6 0.8756 -9.0364 -3.5981 20 6 1.7214 -9.6604 -2.5061 21 6 3.0339 -10.0841 -2.4949 22 6 3.5805 -10.6170 -1.3416 23 6 2.8087 -10.7240 -0.1989 24 6 1.4951 -10.3041 -0.2056 25 6 0.9357 -9.7696 -1.3653 26 6 1.0334 -7.1781 0.4327 27 6 1.7255 -5.9882 0.5399 28 1 -0.4850 0.8401 0.0004 29 1 2.9169 -3.6484 0.0777 30 1 -0.2721 -4.0406 -1.3780 31 1 -1.4905 -6.1697 -1.5697 32 1 -1.9306 -8.3423 -0.5854 33 1 -0.7246 -9.1319 0.4589 34 1 -0.1350 -7.4079 -2.5490 35 1 -1.2423 -8.5425 -3.3870 36 1 1.4266 -8.2473 -4.1097 37 1 0.5383 -9.7940 -4.3055 38 1 3.6358 -9.9992 -3.3876 39 1 4.6081 -10.9490 -1.3332 40 1 3.2365 -11.1377 0.7023 41 1 0.8978 -10.3900 0.6901 42 1 1.3943 -8.0596 0.9415 43 1 2.6275 -5.9388 1.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184899277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:42 Heat of formation + Delta-G solvation = 11.501190 kcal Electronic energy + Delta-G solvation = -26350.341692 eV Core-core repulsion = 22745.347658 eV Total energy + Delta-G solvation = -3604.994034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00347 -40.68058 -38.97467 -37.49095 -35.46534 -34.60163 -33.75320 -31.95937 -31.40939 -29.94074 -29.71271 -28.36486 -26.06775 -24.19622 -23.68492 -23.09307 -22.11838 -21.78959 -21.08728 -19.48773 -18.12953 -17.59713 -17.54078 -17.12475 -16.71282 -16.48667 -16.20766 -15.79914 -15.73448 -15.04649 -14.89557 -14.70243 -14.47208 -14.36307 -14.19962 -13.81654 -13.54361 -13.32499 -13.26593 -13.06531 -12.83150 -12.78212 -12.68744 -12.61534 -12.35124 -12.20636 -12.06109 -11.90460 -11.68200 -11.07687 -10.84202 -10.77268 -10.01250 -9.72965 -9.61664 -8.77882 -8.58548 -8.39591 -6.97891 0.35346 0.50022 0.54689 0.60466 1.38130 1.39159 1.55048 2.18897 2.33364 2.68496 2.88063 2.95891 3.05508 3.54935 3.66952 3.74160 3.90922 3.92207 4.09113 4.16162 4.24485 4.30895 4.37105 4.49631 4.50502 4.59123 4.69733 4.73015 4.82351 4.83279 4.89687 4.98915 5.03045 5.10566 5.14870 5.22514 5.38603 5.44500 5.49420 5.58701 5.63757 5.70666 5.77905 5.84917 5.91357 6.04612 6.13514 6.35742 6.38196 6.74915 7.29824 8.31929 8.53816 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021570 B = 0.002909 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.792966 B = 9623.379308 C = 9986.577331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.030 3.970 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.567 4.567 8 H 0.092 0.908 9 C 0.529 3.471 10 O -0.605 6.605 11 N -0.695 5.695 12 C 0.165 3.835 13 C -0.158 4.158 14 C -0.083 4.083 15 C -0.157 4.157 16 C 0.095 3.905 17 N -0.468 5.468 18 C 0.025 3.975 19 C -0.082 4.082 20 C -0.161 4.161 21 C -0.095 4.095 22 C -0.151 4.151 23 C -0.099 4.099 24 C -0.148 4.148 25 C 0.088 3.912 26 C -0.073 4.073 27 C -0.171 4.171 28 H 0.278 0.722 29 H 0.406 0.594 30 H 0.094 0.906 31 H 0.132 0.868 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.131 0.869 42 H 0.142 0.858 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.661 -20.198 -2.998 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.602 4.602 8 H 0.110 0.890 9 C 0.336 3.664 10 O -0.491 6.491 11 N -0.339 5.339 12 C 0.068 3.932 13 C -0.180 4.180 14 C -0.102 4.102 15 C -0.160 4.160 16 C -0.030 4.030 17 N -0.181 5.181 18 C -0.100 4.100 19 C -0.119 4.119 20 C -0.163 4.163 21 C -0.113 4.113 22 C -0.170 4.170 23 C -0.118 4.118 24 C -0.169 4.169 25 C -0.010 4.010 26 C -0.092 4.092 27 C -0.192 4.192 28 H 0.088 0.912 29 H 0.241 0.759 30 H 0.112 0.888 31 H 0.150 0.850 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.148 0.852 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.192 -20.413 -3.095 21.067 hybrid contribution 0.881 1.716 0.055 1.930 sum 5.073 -18.696 -3.040 19.610 Atomic orbital electron populations 1.70144 1.09566 1.29395 1.35028 1.27011 0.95575 1.05011 0.91072 0.84958 0.78780 0.74709 0.79525 1.18533 1.19658 1.17091 1.21412 0.94993 0.89637 1.54185 0.89004 1.18735 0.87206 0.83774 0.76697 1.90596 1.15552 1.87195 1.55754 1.43748 1.10180 1.04077 1.75874 1.18265 0.93980 0.86787 0.94216 1.21105 0.97771 0.98064 1.01015 1.20948 0.99153 0.91160 0.98913 1.20362 0.98168 0.96207 1.01225 1.21301 0.99026 0.88896 0.93771 1.61067 1.18743 1.33230 1.05010 1.23597 1.00066 0.96707 0.89664 1.21290 0.94405 0.99905 0.96336 1.20792 0.94928 1.04211 0.96413 1.20659 0.93351 0.97992 0.99328 1.21287 1.01002 1.01873 0.92831 1.21188 0.93062 0.98345 0.99161 1.20693 0.96312 1.03390 0.96458 1.19845 0.88523 0.97735 0.94903 1.21015 0.93944 0.96831 0.97418 1.21072 1.03308 0.92559 1.02300 0.91202 0.75893 0.88826 0.85044 0.88392 0.88286 0.91591 0.87609 0.90310 0.88734 0.85156 0.83933 0.83508 0.85087 0.84041 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.62 11.82 21.85 0.26 -48.37 16 2 C 0.03 1.62 5.50 85.33 0.47 2.09 16 3 Si 1.00 39.79 29.56 68.60 2.03 41.82 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 7 C -0.57 -31.48 9.54 24.79 0.24 -31.24 16 8 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 9 C 0.53 30.52 7.47 86.30 0.65 31.16 16 10 O -0.61 -39.77 12.70 -4.49 -0.06 -39.83 16 11 N -0.69 -32.33 5.32 -307.52 -1.64 -33.97 16 12 C 0.17 7.08 6.28 38.30 0.24 7.32 16 13 C -0.16 -7.00 8.65 22.42 0.19 -6.80 16 14 C -0.08 -2.83 7.37 22.25 0.16 -2.67 16 15 C -0.16 -4.53 4.14 -19.82 -0.08 -4.61 16 16 C 0.10 2.16 5.54 85.56 0.47 2.63 16 17 N -0.47 -10.82 5.29 -692.96 -3.67 -14.49 16 18 C 0.03 0.57 6.61 86.65 0.57 1.15 16 19 C -0.08 -1.74 7.04 30.67 0.22 -1.53 16 20 C -0.16 -3.77 6.23 -19.49 -0.12 -3.89 16 21 C -0.09 -1.95 10.03 22.21 0.22 -1.73 16 22 C -0.15 -2.71 10.06 22.30 0.22 -2.49 16 23 C -0.10 -1.74 10.02 22.21 0.22 -1.52 16 24 C -0.15 -2.99 7.76 22.47 0.17 -2.82 16 25 C 0.09 2.07 4.97 38.28 0.19 2.26 16 26 C -0.07 -2.13 8.86 22.25 0.20 -1.94 16 27 C -0.17 -5.86 9.97 22.42 0.22 -5.63 16 28 H 0.28 15.02 8.29 -92.71 -0.77 14.25 16 29 H 0.41 16.01 8.79 -92.71 -0.82 15.19 16 30 H 0.09 4.94 6.42 -2.91 -0.02 4.92 16 31 H 0.13 3.95 7.95 -2.91 -0.02 3.93 16 32 H 0.10 2.02 8.08 -2.39 -0.02 2.00 16 33 H 0.10 1.94 6.80 -2.39 -0.02 1.92 16 34 H 0.07 1.76 4.31 -2.39 -0.01 1.75 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 40 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.13 2.23 7.16 -2.91 -0.02 2.21 16 42 H 0.14 3.37 6.52 -2.91 -0.02 3.35 16 43 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -74.96 350.88 1.62 -73.34 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: 0.23 Total: 41.76 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 4.46 Total: -20.26 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -5.05 Total: -96.83 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.06 Total: -39.83 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -74.96 1.62 -73.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184899277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.844 kcal (2) G-P(sol) polarization free energy of solvation -74.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds