Wall clock time and date at job start Tue Mar 31 2020 13:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86798 * 120.00465 * 2 1 4 4 H 1.48501 * 109.47590 * 270.00434 * 3 2 1 5 5 H 1.48504 * 109.46713 * 30.00340 * 3 2 1 6 6 H 1.48500 * 109.47436 * 149.99906 * 3 2 1 7 7 C 1.40053 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00331 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99871 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99936 * 5.81784 * 9 7 2 11 11 N 1.34772 * 119.99977 * 185.81438 * 9 7 2 12 12 C 1.46493 * 120.00358 * 357.10414 * 11 9 7 13 13 C 1.50695 * 109.47587 * 89.99841 * 12 11 9 14 14 C 1.38337 * 119.94012 * 90.00047 * 13 12 11 15 15 C 1.38306 * 120.24410 * 180.02562 * 14 13 12 16 16 C 1.38038 * 120.12002 * 359.97438 * 15 14 13 17 17 C 1.39313 * 119.87709 * 0.02562 * 16 15 14 18 18 C 1.48396 * 120.11807 * 180.02562 * 17 16 15 19 19 C 1.39757 * 120.53773 * 359.97438 * 18 17 16 20 20 C 1.38420 * 118.31321 * 179.97438 * 19 18 17 21 21 C 1.38316 * 119.28192 * 0.25030 * 20 19 18 22 22 N 1.31891 * 121.02583 * 359.45343 * 21 20 19 23 23 C 1.31749 * 121.85174 * 0.58471 * 22 21 20 24 24 C 1.38003 * 119.93986 * 270.28248 * 13 12 11 25 25 C 1.46502 * 119.99873 * 177.10101 * 11 9 7 26 26 C 1.53009 * 117.49928 * 17.01580 * 25 11 9 27 27 C 1.53003 * 117.50121 * 308.35374 * 25 11 9 28 28 H 0.97005 * 120.00015 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46739 * 329.99836 * 12 11 9 30 30 H 1.09001 * 109.47210 * 210.00409 * 12 11 9 31 31 H 1.08003 * 119.87869 * 359.97438 * 14 13 12 32 32 H 1.07995 * 119.93713 * 179.97438 * 15 14 13 33 33 H 1.08001 * 120.05963 * 180.02562 * 16 15 14 34 34 H 1.07999 * 120.84693 * 0.02562 * 19 18 17 35 35 H 1.07999 * 120.35870 * 179.97438 * 20 19 18 36 36 H 1.08000 * 119.48643 * 179.75275 * 21 20 19 37 37 H 1.08001 * 119.69835 * 179.70693 * 23 22 21 38 38 H 1.08002 * 120.05936 * 0.02562 * 24 13 12 39 39 H 1.09002 * 115.55450 * 162.68124 * 25 11 9 40 40 H 1.09002 * 117.49490 * 359.97438 * 26 25 11 41 41 H 1.08992 * 117.49910 * 145.02069 * 26 25 11 42 42 H 1.08994 * 117.50231 * 214.97793 * 27 25 11 43 43 H 1.09004 * 117.49273 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0465 -1.4000 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0868 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0628 -2.4832 -0.1069 11 7 1.9437 -3.6447 0.1172 12 6 3.4072 -3.6457 0.1813 13 6 3.8472 -3.5384 1.6186 14 6 4.0441 -4.6846 2.3677 15 6 4.4474 -4.5934 3.6876 16 6 4.6562 -3.3568 4.2642 17 6 4.4594 -2.1993 3.5144 18 6 4.6829 -0.8671 4.1289 19 6 5.0910 -0.7590 5.4611 20 6 5.2863 0.5063 5.9873 21 6 5.0683 1.6130 5.1868 22 7 4.6887 1.4792 3.9308 23 6 4.4898 0.2959 3.3868 24 6 4.0474 -2.2968 2.1868 25 6 1.2069 -4.9094 0.1811 26 6 -0.2514 -4.9016 -0.2819 27 6 0.0783 -5.0184 1.2084 28 1 -0.4850 0.8401 0.0004 29 1 3.7961 -2.7973 -0.3820 30 1 3.7891 -4.5722 -0.2475 31 1 3.8815 -5.6541 1.9206 32 1 4.5992 -5.4914 4.2679 33 1 4.9715 -3.2868 5.2948 34 1 5.2507 -1.6403 6.0646 35 1 5.6012 0.6282 7.0132 36 1 5.2159 2.6018 5.5951 37 1 4.1745 0.2270 2.3561 38 1 3.8886 -1.4025 1.6025 39 1 1.7936 -5.8060 -0.0190 40 1 -0.6627 -3.9554 -0.6337 41 1 -0.6241 -5.7931 -0.7862 42 1 -0.0777 -5.9867 1.6839 43 1 -0.1157 -4.1492 1.8370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185097212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:44 Heat of formation + Delta-G solvation = 70.156709 kcal Electronic energy + Delta-G solvation = -27012.891914 eV Core-core repulsion = 23410.441374 eV Total energy + Delta-G solvation = -3602.450540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23820 -39.05907 -38.07606 -34.90599 -34.11997 -32.81261 -32.46161 -31.98924 -30.28390 -28.95748 -26.47625 -25.43609 -23.89781 -23.50240 -22.10859 -21.48868 -21.32609 -20.38749 -18.88736 -17.57022 -16.57162 -16.16993 -16.04719 -15.72676 -15.51029 -15.13235 -14.46616 -14.22393 -13.93131 -13.88692 -13.55844 -13.44932 -13.33053 -12.97883 -12.67697 -12.44960 -12.00939 -11.86960 -11.82781 -11.46488 -11.19467 -11.03336 -10.98343 -10.84575 -10.47933 -10.26629 -10.10564 -10.02283 -9.98725 -9.50379 -9.41750 -9.30595 -8.87626 -8.45653 -7.91354 -7.35891 -7.08242 -6.21819 -4.71047 0.73757 1.32049 1.71607 2.06199 3.13038 3.21467 3.23999 3.79084 4.03007 4.21138 4.43778 4.49118 4.57553 4.75434 4.82882 4.83012 4.95986 5.05939 5.18916 5.20869 5.38924 5.50165 5.59097 5.66013 5.70985 5.76701 5.83571 5.85640 5.94185 6.00687 6.10658 6.17660 6.25121 6.33572 6.35764 6.43680 6.46918 6.66936 6.78009 6.86082 6.93259 7.03608 7.27316 7.36768 7.45990 7.56795 8.09596 8.13371 8.28711 8.95616 9.35117 10.51721 10.70455 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.005964 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.471804 B = 4693.797259 C = 6794.563312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.092 3.908 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.562 3.438 10 O -0.563 6.563 11 N -0.609 5.609 12 C 0.167 3.833 13 C -0.085 4.085 14 C -0.101 4.101 15 C -0.128 4.128 16 C -0.114 4.114 17 C -0.059 4.059 18 C -0.082 4.082 19 C -0.075 4.075 20 C -0.174 4.174 21 C 0.087 3.913 22 N -0.480 5.480 23 C 0.111 3.889 24 C -0.076 4.076 25 C 0.087 3.913 26 C -0.202 4.202 27 C -0.197 4.197 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.143 0.857 39 H 0.101 0.899 40 H 0.155 0.845 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.832 -4.825 8.780 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.129 4.129 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.179 1.179 7 C -0.578 4.578 8 H 0.091 0.909 9 C 0.369 3.631 10 O -0.446 6.446 11 N -0.343 5.343 12 C 0.042 3.958 13 C -0.087 4.087 14 C -0.120 4.120 15 C -0.146 4.146 16 C -0.132 4.132 17 C -0.059 4.059 18 C -0.084 4.084 19 C -0.101 4.101 20 C -0.194 4.194 21 C -0.069 4.069 22 N -0.188 5.188 23 C -0.047 4.047 24 C -0.094 4.094 25 C -0.019 4.019 26 C -0.240 4.240 27 C -0.237 4.237 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.182 0.818 38 H 0.160 0.840 39 H 0.119 0.881 40 H 0.172 0.828 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.859 -3.936 8.187 14.158 hybrid contribution 0.550 -0.121 0.872 1.038 sum 11.409 -4.057 9.060 15.123 Atomic orbital electron populations 1.69978 1.07008 1.27402 1.34631 1.25664 0.94593 1.00069 0.92581 0.86638 0.80825 0.81972 0.78987 1.19700 1.20289 1.17946 1.20964 0.93383 0.89115 1.54346 0.90935 1.18236 0.86855 0.81955 0.76083 1.90335 1.14291 1.85130 1.54843 1.47497 1.03758 1.05071 1.77937 1.20158 0.82568 1.02161 0.90908 1.20484 0.97295 0.92619 0.98291 1.21077 0.98752 0.98064 0.94088 1.20913 1.01382 0.96943 0.95363 1.21030 1.01139 0.92004 0.99074 1.18596 1.02050 0.90974 0.94315 1.19858 1.00045 0.94156 0.94383 1.21620 0.96237 0.97916 0.94309 1.22026 1.02719 0.93381 1.01295 1.22797 0.95430 0.98932 0.89774 1.67697 1.11238 1.27148 1.12699 1.23253 0.94061 0.86584 1.00756 1.21577 0.95221 0.98852 0.93790 1.21233 0.88441 0.88192 1.03989 1.24185 0.98013 1.05318 0.96441 1.23116 1.05970 1.01151 0.93431 0.92011 0.89161 0.91832 0.86529 0.86455 0.86579 0.84834 0.84948 0.83031 0.81814 0.83979 0.88118 0.82799 0.91649 0.90697 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.90 11.84 55.55 0.66 -21.24 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 3 Si 0.89 19.55 29.56 -169.99 -5.02 14.53 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.26 -5.26 6.16 56.52 0.35 -4.91 16 7 C -0.54 -13.95 7.66 -35.63 -0.27 -14.22 16 8 H 0.07 1.68 4.26 -52.49 -0.22 1.45 16 9 C 0.56 14.85 7.37 -12.99 -0.10 14.76 16 10 O -0.56 -16.76 10.90 5.20 0.06 -16.70 16 11 N -0.61 -13.09 2.82 -169.12 -0.48 -13.57 16 12 C 0.17 2.92 5.37 -5.20 -0.03 2.89 16 13 C -0.09 -1.43 5.46 -104.67 -0.57 -2.00 16 14 C -0.10 -1.47 9.69 -39.52 -0.38 -1.85 16 15 C -0.13 -1.69 10.03 -39.63 -0.40 -2.09 16 16 C -0.11 -1.56 9.44 -39.26 -0.37 -1.94 16 17 C -0.06 -0.93 5.88 -104.90 -0.62 -1.55 16 18 C -0.08 -1.28 5.89 -104.75 -0.62 -1.90 16 19 C -0.08 -0.94 9.54 -38.95 -0.37 -1.32 16 20 C -0.17 -1.98 10.10 -39.49 -0.40 -2.38 16 21 C 0.09 1.14 11.17 -17.50 -0.20 0.95 16 22 N -0.48 -8.08 10.35 -12.97 -0.13 -8.21 16 23 C 0.11 1.91 10.60 -17.19 -0.18 1.73 16 24 C -0.08 -1.34 8.62 -39.25 -0.34 -1.68 16 25 C 0.09 1.70 6.62 -67.92 -0.45 1.25 16 26 C -0.20 -4.19 9.64 -26.68 -0.26 -4.45 16 27 C -0.20 -3.95 9.90 -26.69 -0.26 -4.21 16 28 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 29 H 0.09 1.61 6.09 -51.93 -0.32 1.30 16 30 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 31 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.27 6.28 -52.49 -0.33 0.94 16 34 H 0.13 1.32 6.33 -52.49 -0.33 0.99 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.16 3.01 5.28 -52.49 -0.28 2.73 16 38 H 0.14 2.70 3.72 -52.49 -0.20 2.51 16 39 H 0.10 1.62 8.09 -51.93 -0.42 1.20 16 40 H 0.15 3.90 4.97 -53.36 -0.27 3.64 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.09 2.16 7.81 -51.93 -0.41 1.75 16 LS Contribution 351.95 15.07 5.30 5.30 Total: -1.00 -32.36 351.95 -10.43 -42.78 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -4.90 Total: 12.78 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -5.91 Total: -15.68 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.05 Total: -43.02 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.06 Total: -16.70 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.36 -10.43 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185097212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.942 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds