Wall clock time and date at job start Tue Mar 31 2020 13:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86798 * 120.00465 * 2 1 4 4 H 1.48501 * 109.47590 * 270.00434 * 3 2 1 5 5 H 1.48504 * 109.46713 * 30.00340 * 3 2 1 6 6 H 1.48500 * 109.47436 * 149.99906 * 3 2 1 7 7 C 1.40053 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00331 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99871 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99936 * 5.81784 * 9 7 2 11 11 N 1.34772 * 119.99977 * 185.81438 * 9 7 2 12 12 C 1.46493 * 120.00358 * 357.10414 * 11 9 7 13 13 C 1.50695 * 109.47587 * 89.99841 * 12 11 9 14 14 C 1.38337 * 119.94012 * 90.00047 * 13 12 11 15 15 C 1.38306 * 120.24410 * 180.02562 * 14 13 12 16 16 C 1.38038 * 120.12002 * 359.97438 * 15 14 13 17 17 C 1.39313 * 119.87709 * 0.02562 * 16 15 14 18 18 C 1.48396 * 120.11807 * 180.02562 * 17 16 15 19 19 C 1.39757 * 120.53773 * 359.97438 * 18 17 16 20 20 C 1.38420 * 118.31321 * 179.97438 * 19 18 17 21 21 C 1.38316 * 119.28192 * 0.25030 * 20 19 18 22 22 N 1.31891 * 121.02583 * 359.45343 * 21 20 19 23 23 C 1.31749 * 121.85174 * 0.58471 * 22 21 20 24 24 C 1.38003 * 119.93986 * 270.28248 * 13 12 11 25 25 C 1.46502 * 119.99873 * 177.10101 * 11 9 7 26 26 C 1.53009 * 117.49928 * 17.01580 * 25 11 9 27 27 C 1.53003 * 117.50121 * 308.35374 * 25 11 9 28 28 H 0.97005 * 120.00015 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46739 * 329.99836 * 12 11 9 30 30 H 1.09001 * 109.47210 * 210.00409 * 12 11 9 31 31 H 1.08003 * 119.87869 * 359.97438 * 14 13 12 32 32 H 1.07995 * 119.93713 * 179.97438 * 15 14 13 33 33 H 1.08001 * 120.05963 * 180.02562 * 16 15 14 34 34 H 1.07999 * 120.84693 * 0.02562 * 19 18 17 35 35 H 1.07999 * 120.35870 * 179.97438 * 20 19 18 36 36 H 1.08000 * 119.48643 * 179.75275 * 21 20 19 37 37 H 1.08001 * 119.69835 * 179.70693 * 23 22 21 38 38 H 1.08002 * 120.05936 * 0.02562 * 24 13 12 39 39 H 1.09002 * 115.55450 * 162.68124 * 25 11 9 40 40 H 1.09002 * 117.49490 * 359.97438 * 26 25 11 41 41 H 1.08992 * 117.49910 * 145.02069 * 26 25 11 42 42 H 1.08994 * 117.50231 * 214.97793 * 27 25 11 43 43 H 1.09004 * 117.49273 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0465 -1.4000 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0868 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0628 -2.4832 -0.1069 11 7 1.9437 -3.6447 0.1172 12 6 3.4072 -3.6457 0.1813 13 6 3.8472 -3.5384 1.6186 14 6 4.0441 -4.6846 2.3677 15 6 4.4474 -4.5934 3.6876 16 6 4.6562 -3.3568 4.2642 17 6 4.4594 -2.1993 3.5144 18 6 4.6829 -0.8671 4.1289 19 6 5.0910 -0.7590 5.4611 20 6 5.2863 0.5063 5.9873 21 6 5.0683 1.6130 5.1868 22 7 4.6887 1.4792 3.9308 23 6 4.4898 0.2959 3.3868 24 6 4.0474 -2.2968 2.1868 25 6 1.2069 -4.9094 0.1811 26 6 -0.2514 -4.9016 -0.2819 27 6 0.0783 -5.0184 1.2084 28 1 -0.4850 0.8401 0.0004 29 1 3.7961 -2.7973 -0.3820 30 1 3.7891 -4.5722 -0.2475 31 1 3.8815 -5.6541 1.9206 32 1 4.5992 -5.4914 4.2679 33 1 4.9715 -3.2868 5.2948 34 1 5.2507 -1.6403 6.0646 35 1 5.6012 0.6282 7.0132 36 1 5.2159 2.6018 5.5951 37 1 4.1745 0.2270 2.3561 38 1 3.8886 -1.4025 1.6025 39 1 1.7936 -5.8060 -0.0190 40 1 -0.6627 -3.9554 -0.6337 41 1 -0.6241 -5.7931 -0.7862 42 1 -0.0777 -5.9867 1.6839 43 1 -0.1157 -4.1492 1.8370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185097212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:44 Heat of formation + Delta-G solvation = 51.492458 kcal Electronic energy + Delta-G solvation = -27013.701257 eV Core-core repulsion = 23410.441374 eV Total energy + Delta-G solvation = -3603.259882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.34056 -40.54365 -39.48432 -36.76113 -35.54165 -34.52025 -34.02324 -33.02264 -31.61710 -30.08289 -28.46693 -26.80390 -25.00527 -24.62396 -23.83917 -23.10501 -22.47257 -21.57503 -20.72315 -18.68480 -18.34936 -17.60708 -17.24382 -17.10756 -16.77518 -16.61571 -16.07157 -15.56232 -15.35443 -15.00904 -14.99357 -14.74555 -14.59614 -14.44162 -14.08217 -13.85000 -13.57227 -13.37691 -13.07057 -12.96848 -12.82622 -12.74891 -12.49354 -12.27981 -12.12134 -11.95817 -11.72761 -11.52359 -11.16040 -11.03292 -10.90686 -10.44625 -10.39933 -9.65060 -9.37092 -9.03715 -8.84226 -8.25044 -6.78465 -0.34420 0.29068 0.55710 0.96812 1.30802 1.36305 1.45248 2.16141 2.43531 2.62330 2.89099 3.15603 3.24579 3.43657 3.66266 3.73232 3.81906 3.97235 4.04446 4.10731 4.15604 4.20057 4.25833 4.33928 4.41488 4.43276 4.51926 4.63193 4.77997 4.82094 4.85932 4.87360 4.92693 5.10548 5.14327 5.17503 5.25714 5.27616 5.37520 5.58837 5.68005 5.70262 5.76278 5.79033 5.86408 6.15519 6.22442 6.51987 6.90397 7.01334 7.44994 8.50834 8.70624 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.005964 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.471804 B = 4693.797259 C = 6794.563312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.044 3.956 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.551 4.551 8 H 0.090 0.910 9 C 0.546 3.454 10 O -0.606 6.606 11 N -0.611 5.611 12 C 0.164 3.836 13 C -0.104 4.104 14 C -0.102 4.102 15 C -0.122 4.122 16 C -0.110 4.110 17 C -0.072 4.072 18 C -0.098 4.098 19 C -0.072 4.072 20 C -0.157 4.157 21 C 0.077 3.923 22 N -0.516 5.516 23 C 0.077 3.923 24 C -0.106 4.106 25 C 0.093 3.907 26 C -0.215 4.215 27 C -0.191 4.191 28 H 0.270 0.730 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.143 0.857 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.179 0.821 36 H 0.183 0.817 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.152 0.848 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.753 -7.292 11.709 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.172 4.172 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.166 1.166 7 C -0.587 4.587 8 H 0.108 0.892 9 C 0.352 3.648 10 O -0.493 6.493 11 N -0.343 5.343 12 C 0.041 3.959 13 C -0.105 4.105 14 C -0.120 4.120 15 C -0.139 4.139 16 C -0.128 4.128 17 C -0.073 4.073 18 C -0.100 4.100 19 C -0.098 4.098 20 C -0.176 4.176 21 C -0.080 4.080 22 N -0.225 5.225 23 C -0.079 4.079 24 C -0.125 4.125 25 C -0.012 4.012 26 C -0.253 4.253 27 C -0.230 4.230 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.160 0.840 32 H 0.174 0.826 33 H 0.168 0.832 34 H 0.186 0.814 35 H 0.196 0.804 36 H 0.200 0.800 37 H 0.152 0.848 38 H 0.130 0.870 39 H 0.170 0.830 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.135 0.865 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.832 -6.439 11.105 18.870 hybrid contribution -0.305 0.606 0.066 0.681 sum 13.527 -5.833 11.170 18.487 Atomic orbital electron populations 1.70145 1.09012 1.28260 1.37232 1.26597 0.95160 1.03731 0.91691 0.85607 0.79834 0.77281 0.79348 1.18571 1.20804 1.16607 1.21395 0.94370 0.89533 1.53428 0.89227 1.18529 0.86586 0.83805 0.75866 1.90360 1.16103 1.86497 1.56365 1.47341 1.05569 1.04652 1.76710 1.20334 0.79982 1.03465 0.92122 1.20407 0.98857 0.93308 0.97932 1.21372 0.97933 0.98036 0.94677 1.21374 0.99453 0.98135 0.94984 1.21435 0.99783 0.91232 1.00352 1.18790 1.02332 0.92304 0.93892 1.19954 1.00897 0.93271 0.95834 1.22046 0.94823 0.99888 0.93002 1.22507 1.00184 0.92076 1.02875 1.23429 0.94506 1.01279 0.88746 1.67606 1.12701 1.27204 1.14972 1.22952 0.96687 0.88010 1.00297 1.21494 0.97520 0.98402 0.95036 1.21667 0.88233 0.88603 1.02724 1.23911 0.99645 1.04332 0.97404 1.23015 1.06426 1.01083 0.92439 0.92046 0.90798 0.87921 0.83966 0.82604 0.83197 0.81427 0.80370 0.80039 0.84822 0.86963 0.83044 0.87904 0.88052 0.86517 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.38 11.84 21.84 0.26 -50.12 16 2 C 0.04 2.47 5.50 85.31 0.47 2.94 16 3 Si 0.96 43.10 29.56 68.60 2.03 45.13 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.24 -10.31 6.16 99.48 0.61 -9.70 16 7 C -0.55 -30.22 7.66 24.83 0.19 -30.03 16 8 H 0.09 4.45 4.26 -2.92 -0.01 4.44 16 9 C 0.55 30.55 7.37 86.36 0.64 31.18 16 10 O -0.61 -38.77 10.90 -4.32 -0.05 -38.82 16 11 N -0.61 -26.61 2.82 -807.20 -2.28 -28.89 16 12 C 0.16 5.68 5.37 85.63 0.46 6.14 16 13 C -0.10 -3.42 5.46 -19.90 -0.11 -3.53 16 14 C -0.10 -2.63 9.69 22.31 0.22 -2.41 16 15 C -0.12 -2.69 10.03 22.24 0.22 -2.47 16 16 C -0.11 -2.65 9.44 22.48 0.21 -2.44 16 17 C -0.07 -2.28 5.88 -20.04 -0.12 -2.39 16 18 C -0.10 -3.00 5.89 -19.95 -0.12 -3.12 16 19 C -0.07 -1.59 9.54 22.68 0.22 -1.37 16 20 C -0.16 -2.98 10.10 22.33 0.23 -2.75 16 21 C 0.08 1.87 11.17 84.70 0.95 2.82 16 22 N -0.52 -17.65 10.35 -194.95 -2.02 -19.67 16 23 C 0.08 2.78 10.60 84.96 0.90 3.69 16 24 C -0.11 -3.88 8.62 22.48 0.19 -3.68 16 25 C 0.09 3.48 6.62 44.99 0.30 3.78 16 26 C -0.22 -8.96 9.64 30.62 0.30 -8.66 16 27 C -0.19 -7.50 9.90 30.62 0.30 -7.20 16 28 H 0.27 15.43 8.29 -92.70 -0.77 14.66 16 29 H 0.07 2.75 6.09 -2.39 -0.01 2.74 16 30 H 0.10 2.70 7.98 -2.39 -0.02 2.69 16 31 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 32 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.15 2.49 6.28 -2.91 -0.02 2.48 16 34 H 0.17 2.44 6.33 -2.91 -0.02 2.42 16 35 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.13 5.47 5.28 -2.91 -0.02 5.45 16 38 H 0.11 4.69 3.72 -2.91 -0.01 4.68 16 39 H 0.15 4.16 8.09 -2.39 -0.02 4.14 16 40 H 0.10 5.54 4.97 -25.02 -0.12 5.42 16 41 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 42 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 43 H 0.04 2.09 7.81 -2.38 -0.02 2.07 16 Total: -1.00 -80.39 351.95 4.24 -76.15 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: 0.85 Total: 35.74 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 5.44 Total: -19.51 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -4.04 Total: -98.68 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.05 Total: -38.82 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -80.39 4.24 -76.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185097212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.644 kcal (2) G-P(sol) polarization free energy of solvation -80.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds