Wall clock time and date at job start Tue Mar 31 2020 12:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46927 * 59.99717 * 9 7 5 11 11 H 1.48496 * 109.47287 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47040 * 299.99940 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 N 1.46491 * 109.46957 * 179.72354 * 15 13 3 17 17 C 1.34946 * 126.04078 * 125.00015 * 16 15 13 18 18 C 1.35314 * 107.75232 * 179.97438 * 17 16 15 19 19 N 1.48024 * 126.04548 * 179.97438 * 18 17 16 20 20 O 1.21801 * 119.99479 * 0.02920 * 19 18 17 21 21 O 1.21795 * 120.00044 * 180.02562 * 19 18 17 22 22 C 1.39879 * 107.91736 * 0.02562 * 18 17 16 23 23 C 1.50695 * 125.89675 * 180.02562 * 22 18 17 24 24 C 1.53005 * 117.49683 * 188.61760 * 23 22 18 25 25 C 1.52999 * 117.49885 * 119.99745 * 23 22 18 26 26 N 1.30832 * 108.20099 * 359.73744 * 22 18 17 27 27 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 29 29 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 30 30 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 31 31 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 32 32 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 33 33 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 34 34 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 36 36 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 37 37 H 1.07999 * 126.12566 * 359.97438 * 17 16 15 38 38 H 1.09002 * 115.55256 * 334.32442 * 23 22 18 39 39 H 1.08996 * 117.49747 * 359.97438 * 24 23 22 40 40 H 1.09003 * 117.49558 * 145.02285 * 24 23 22 41 41 H 1.09000 * 117.50118 * 214.98067 * 25 23 22 42 42 H 1.09000 * 117.49902 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 6.1403 0.6395 -3.5952 11 1 6.1611 2.7961 -4.7030 12 1 6.8414 2.6186 -2.3819 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 7 2.3200 2.2001 3.5857 17 6 1.4952 2.5344 4.6001 18 6 2.1670 3.3784 5.4169 19 7 1.6409 3.9945 6.6558 20 8 0.5042 3.7532 7.0207 21 8 2.3448 4.7426 7.3103 22 6 3.4461 3.5669 4.8831 23 6 4.5302 4.4327 5.4713 24 6 5.7862 4.6623 4.6282 25 6 5.8455 3.7530 5.8572 26 7 3.5407 2.8569 3.7883 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0285 33 1 2.0956 3.1410 -1.1385 34 1 3.6759 3.5175 -4.4431 35 1 0.9499 1.0100 2.5343 36 1 2.6281 0.4167 2.5258 37 1 0.4806 2.1899 4.7357 38 1 4.1865 5.2561 6.0974 39 1 5.8284 4.1868 3.6483 40 1 6.2690 5.6370 4.6995 41 1 6.3673 4.1294 6.7371 42 1 5.9265 2.6796 5.6861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185176942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:18 Heat of formation + Delta-G solvation = 49.384924 kcal Electronic energy + Delta-G solvation = -27270.490757 eV Core-core repulsion = 23256.290222 eV Total energy + Delta-G solvation = -4014.200535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.53219 -42.46463 -40.75169 -38.31577 -37.46898 -37.09054 -35.10716 -34.45305 -32.29449 -31.67815 -30.32454 -28.60253 -26.92356 -25.44264 -24.51063 -23.82130 -23.38897 -22.71026 -21.22625 -20.60190 -19.63136 -19.27859 -18.77430 -18.59924 -18.29041 -17.85509 -17.06805 -16.65397 -16.44580 -16.16287 -15.96442 -15.59727 -14.80607 -14.72523 -14.56217 -14.43514 -13.77125 -13.57921 -13.29196 -13.24625 -13.11177 -12.83608 -12.69471 -12.56293 -12.52038 -12.45301 -12.24515 -12.19890 -12.18442 -12.03178 -11.90249 -11.78684 -11.34301 -10.98060 -10.74577 -10.68855 -10.29496 -9.55410 -8.27808 -6.42145 -0.78097 0.14866 0.37899 1.09187 1.13075 1.32647 1.36749 1.43502 1.59581 2.12358 2.35148 2.81014 2.99516 3.02843 3.04861 3.31394 3.53625 3.76246 3.80237 3.88010 3.95406 4.06617 4.14849 4.18623 4.39750 4.60976 4.63504 4.69578 4.86573 4.91981 4.97648 5.03149 5.04623 5.15150 5.17415 5.22938 5.40529 5.41874 5.50779 5.76395 5.99836 6.01913 6.59068 6.67370 6.68816 7.19532 7.33686 8.79128 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.003586 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.081223 B = 7805.866244 C = 9301.827222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.092 3.908 3 N -0.595 5.595 4 C 0.266 3.734 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.963 3.037 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.482 3.518 14 O -0.578 6.578 15 C 0.115 3.885 16 N -0.332 5.332 17 C 0.178 3.822 18 C -0.212 4.212 19 N 0.079 4.921 20 O -0.178 6.178 21 O -0.190 6.190 22 C 0.152 3.848 23 C -0.116 4.116 24 C -0.166 4.166 25 C -0.132 4.132 26 N -0.277 5.277 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.026 0.974 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.189 0.811 36 H 0.155 0.845 37 H 0.255 0.745 38 H 0.145 0.855 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.133 0.867 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.431 -8.974 17.487 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.030 4.030 3 N -0.326 5.326 4 C 0.145 3.855 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.787 3.213 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.268 3.732 14 O -0.457 6.457 15 C -0.007 4.007 16 N -0.109 5.109 17 C 0.024 3.976 18 C -0.311 4.311 19 N 0.592 4.408 20 O -0.390 6.390 21 O -0.398 6.398 22 C -0.018 4.018 23 C -0.136 4.136 24 C -0.203 4.203 25 C -0.170 4.170 26 N -0.097 5.097 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.044 0.956 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.206 0.794 36 H 0.173 0.827 37 H 0.271 0.729 38 H 0.162 0.838 39 H 0.096 0.904 40 H 0.141 0.859 41 H 0.151 0.849 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.285 -9.046 15.583 18.315 hybrid contribution 0.159 0.850 -0.164 0.880 sum -3.125 -8.196 15.419 17.740 Atomic orbital electron populations 1.22202 0.94019 1.03917 1.02104 1.21937 0.95667 0.80636 1.04771 1.48238 1.63409 1.15339 1.05626 1.18677 0.95242 0.91364 0.80261 1.21674 0.97971 1.32075 1.06476 0.92797 1.25814 1.02132 0.94482 0.96544 1.70031 1.37782 1.34086 1.14841 0.85540 0.79267 0.79175 0.77299 1.18176 1.20441 1.20687 1.21026 0.78690 0.86989 0.86484 1.90774 1.46897 1.20538 1.87510 1.22350 1.08439 0.90595 0.79311 1.48348 1.09060 1.34858 1.18628 1.23033 0.98625 0.91164 0.84826 1.20970 0.98332 1.15820 0.95971 1.42429 0.99836 0.98229 1.00351 1.94491 1.03902 1.66568 1.74047 1.94495 1.57715 1.33480 1.54156 1.21780 0.93352 0.95703 0.90947 1.20774 0.86449 1.01331 1.05069 1.23035 0.98569 1.02846 0.95879 1.23095 0.95397 0.98882 0.99667 1.77888 1.03449 1.12451 1.15875 0.88287 0.91119 0.94632 0.90844 0.87047 0.95556 0.98918 0.92416 0.79415 0.82750 0.72869 0.83764 0.90427 0.85937 0.84856 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.24 71.98 0.74 -2.06 16 2 C 0.09 2.09 5.94 86.38 0.51 2.61 16 3 N -0.59 -21.71 2.46 -826.15 -2.03 -23.74 16 4 C 0.27 13.53 5.16 85.63 0.44 13.97 16 5 C -0.54 -30.26 9.39 25.60 0.24 -30.02 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.54 5.46 84.66 0.46 1.00 16 8 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 9 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 10 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 C 0.48 17.25 7.70 87.66 0.68 17.93 16 14 O -0.58 -28.52 15.30 -3.04 -0.05 -28.57 16 15 C 0.12 2.25 5.54 85.64 0.47 2.73 16 16 N -0.33 -8.26 3.39 -351.82 -1.19 -9.46 16 17 C 0.18 3.54 11.13 83.54 0.93 4.47 16 18 C -0.21 -5.66 7.11 36.10 0.26 -5.41 16 19 N 0.08 2.23 4.45 -47.12 -0.21 2.02 16 20 O -0.18 -4.82 19.02 18.89 0.36 -4.46 16 21 O -0.19 -5.64 17.03 18.89 0.32 -5.32 16 22 C 0.15 4.55 6.75 43.10 0.29 4.84 16 23 C -0.12 -3.03 5.62 -11.54 -0.06 -3.10 16 24 C -0.17 -4.15 10.14 30.60 0.31 -3.84 16 25 C -0.13 -2.75 10.23 30.59 0.31 -2.44 16 26 N -0.28 -9.12 11.24 -47.38 -0.53 -9.65 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 0.91 7.24 -2.39 -0.02 0.89 16 29 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 31 H 0.11 1.50 6.43 -2.39 -0.02 1.48 16 32 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 33 H -0.01 -0.44 7.42 -2.38 -0.02 -0.46 16 34 H 0.27 15.04 8.31 -92.72 -0.77 14.27 16 35 H 0.19 1.43 7.14 -2.38 -0.02 1.41 16 36 H 0.16 2.12 7.40 -2.39 -0.02 2.11 16 37 H 0.26 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.14 3.60 6.64 -2.39 -0.02 3.58 16 39 H 0.08 2.43 7.90 -2.39 -0.02 2.41 16 40 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -85.09 368.65 5.61 -79.48 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.05 Total: 7.77 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 5.58 Total: 0.68 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -3.68 Total: -95.90 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: 0.63 Total: -38.35 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -85.09 5.61 -79.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185176942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.865 kcal (2) G-P(sol) polarization free energy of solvation -85.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds