Wall clock time and date at job start Tue Mar 31 2020 13:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86803 * 119.99995 * 2 1 4 4 H 1.48497 * 109.47057 * 269.99976 * 3 2 1 5 5 H 1.48496 * 109.47159 * 29.99907 * 3 2 1 6 6 H 1.48508 * 109.46871 * 149.99883 * 3 2 1 7 7 C 1.40145 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.41718 * 120.00041 * 359.97438 * 7 2 1 10 10 O 1.21791 * 119.99629 * 351.93054 * 9 7 2 11 11 N 1.34777 * 120.00295 * 171.92278 * 9 7 2 12 12 C 1.47266 * 121.17468 * 353.90122 * 11 9 7 13 13 C 1.53496 * 107.23044 * 221.20466 * 12 11 9 14 14 N 1.46565 * 109.10708 * 298.31998 * 13 12 11 15 15 C 1.46897 * 110.99788 * 287.91402 * 14 13 12 16 16 C 1.50698 * 109.47209 * 192.63625 * 15 14 13 17 17 C 1.38230 * 120.00179 * 90.00047 * 16 15 14 18 18 C 1.38239 * 119.99991 * 179.97438 * 17 16 15 19 19 C 1.38238 * 120.00087 * 0.08872 * 18 17 16 20 20 C 1.38239 * 119.99907 * 359.86313 * 19 18 17 21 21 C 1.38237 * 119.99800 * 0.09719 * 20 19 18 22 22 C 1.39332 * 113.02214 * 53.37849 * 14 13 12 23 23 C 1.39186 * 118.88653 * 157.09404 * 22 14 13 24 24 C 1.38027 * 120.21566 * 179.75337 * 23 22 14 25 25 C 1.38464 * 120.36046 * 359.94474 * 24 23 22 26 26 C 1.38085 * 120.03272 * 0.16062 * 25 24 23 27 27 C 1.38899 * 119.98583 * 359.97375 * 26 25 24 28 28 H 0.97001 * 120.00270 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.90535 * 340.63213 * 12 11 9 30 30 H 1.09005 * 109.90469 * 101.68727 * 12 11 9 31 31 H 1.08996 * 109.53565 * 178.42980 * 13 12 11 32 32 H 1.09002 * 109.53188 * 58.20435 * 13 12 11 33 33 H 1.09007 * 109.47384 * 72.63667 * 15 14 13 34 34 H 1.08996 * 109.47543 * 312.63683 * 15 14 13 35 35 H 1.07998 * 119.99732 * 359.70108 * 17 16 15 36 36 H 1.08002 * 120.00217 * 179.97438 * 18 17 16 37 37 H 1.07999 * 120.00186 * 179.97438 * 19 18 17 38 38 H 1.07994 * 119.99799 * 180.02562 * 20 19 18 39 39 H 1.08004 * 119.99977 * 179.97438 * 21 20 19 40 40 H 1.07996 * 119.88869 * 359.69468 * 23 22 14 41 41 H 1.07995 * 119.81751 * 179.97438 * 24 23 22 42 42 H 1.08007 * 119.98047 * 180.14084 * 25 24 23 43 43 H 1.08001 * 120.00392 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4877 2.0464 -1.4000 5 1 1.4377 2.6527 0.7000 6 1 3.5378 1.4401 0.7001 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2136 -0.0001 9 6 1.2984 -2.4410 -0.0005 10 8 0.0896 -2.4462 0.1480 11 7 1.9622 -3.6024 -0.1651 12 6 3.4009 -3.6203 -0.4789 13 6 3.6224 -4.7125 -1.5345 14 7 3.2320 -6.0087 -0.9728 15 6 4.2048 -6.4625 0.0299 16 6 3.9511 -7.9117 0.3563 17 6 4.5833 -8.9044 -0.3687 18 6 4.3509 -10.2337 -0.0690 19 6 3.4849 -10.5703 0.9546 20 6 2.8534 -9.5775 1.6803 21 6 3.0865 -8.2482 1.3811 22 6 1.9399 -6.0097 -0.4512 23 6 1.2634 -7.2203 -0.3333 24 6 -0.0157 -7.2537 0.1845 25 6 -0.6365 -6.0849 0.5919 26 6 0.0223 -4.8767 0.4785 27 6 1.3086 -4.8337 -0.0440 28 1 -0.4850 0.8400 0.0004 29 1 3.7060 -2.6525 -0.8768 30 1 3.9740 -3.8491 0.4196 31 1 4.6751 -4.7394 -1.8157 32 1 3.0146 -4.4984 -2.4136 33 1 4.1011 -5.8628 0.9343 34 1 5.2141 -6.3506 -0.3662 35 1 5.2553 -8.6414 -1.1722 36 1 4.8445 -11.0094 -0.6357 37 1 3.3030 -11.6089 1.1885 38 1 2.1772 -9.8405 2.4802 39 1 2.5928 -7.4725 1.9477 40 1 1.7404 -8.1364 -0.6488 41 1 -0.5349 -8.1965 0.2727 42 1 -1.6366 -6.1184 0.9983 43 1 -0.4625 -3.9653 0.7960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185843991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:43 Heat of formation + Delta-G solvation = 48.687491 kcal Electronic energy + Delta-G solvation = -27330.972606 eV Core-core repulsion = 23727.591091 eV Total energy + Delta-G solvation = -3603.381515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.64194 -39.02246 -37.26181 -36.47317 -34.06149 -32.79150 -31.46291 -30.89044 -30.02402 -29.56043 -27.51794 -26.36928 -24.77465 -23.09152 -22.48482 -22.26115 -21.42343 -20.22752 -18.95254 -16.91320 -16.87372 -16.30718 -16.09874 -15.77873 -15.39065 -15.00792 -14.72896 -14.43058 -14.06673 -13.91226 -13.78072 -13.33661 -13.04141 -12.94922 -12.71345 -12.53424 -12.31169 -12.25002 -11.86614 -11.69156 -11.40700 -11.26024 -11.10744 -10.92495 -10.79873 -10.76501 -10.69161 -10.47853 -10.28852 -9.41706 -9.02510 -8.89536 -8.74497 -8.51322 -7.78600 -7.36699 -6.78867 -6.44169 -4.99508 1.37420 1.46283 2.04324 2.26249 2.98952 3.06590 3.09762 3.72813 3.86843 4.14781 4.22367 4.32705 4.56285 4.82787 4.90762 5.04820 5.16710 5.22888 5.30108 5.41267 5.54410 5.57103 5.60991 5.68717 5.71601 5.73140 5.75246 5.98133 6.03449 6.04905 6.10762 6.19123 6.25107 6.42756 6.50549 6.56549 6.69486 6.74629 6.87426 6.98879 7.06007 7.15299 7.20161 7.37091 7.49604 7.63659 7.80995 7.97050 8.29500 8.71383 9.11076 10.27019 10.46635 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.003781 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.898646 B = 7403.079558 C = 8271.805737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.089 3.911 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.551 3.449 10 O -0.557 6.557 11 N -0.572 5.572 12 C 0.078 3.922 13 C 0.043 3.957 14 N -0.485 5.485 15 C 0.094 3.906 16 C -0.075 4.075 17 C -0.101 4.101 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.091 4.091 22 C 0.024 3.976 23 C -0.081 4.081 24 C -0.169 4.169 25 C -0.110 4.110 26 C -0.156 4.156 27 C 0.165 3.835 28 H 0.274 0.726 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.084 -14.234 0.376 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.362 3.638 10 O -0.441 6.441 11 N -0.295 5.295 12 C -0.047 4.047 13 C -0.086 4.086 14 N -0.202 5.202 15 C -0.031 4.031 16 C -0.075 4.075 17 C -0.120 4.120 18 C -0.147 4.147 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.109 4.109 22 C -0.075 4.075 23 C -0.101 4.101 24 C -0.189 4.189 25 C -0.129 4.129 26 C -0.177 4.177 27 C 0.063 3.937 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 8.359 -14.266 0.053 16.535 hybrid contribution 0.473 1.257 0.466 1.421 sum 8.832 -13.010 0.519 15.733 Atomic orbital electron populations 1.69975 1.07318 1.28133 1.31901 1.25778 0.94668 1.00722 0.92317 0.86282 0.80241 0.80728 0.79134 1.19412 1.20118 1.18631 1.20103 0.94375 0.89812 1.52821 0.90811 1.17045 0.86980 0.81606 0.78123 1.90421 1.14293 1.84584 1.54813 1.46334 1.08506 1.04558 1.70139 1.22330 0.82938 1.01419 0.98002 1.22596 1.01651 0.86376 0.97935 1.58793 1.00385 1.27997 1.32983 1.21166 0.95611 0.91849 0.94474 1.19708 0.97167 0.94896 0.95736 1.20974 0.99814 0.92363 0.98817 1.21070 0.99263 0.96138 0.98227 1.21094 0.97542 0.99017 0.96449 1.21079 1.00148 0.92819 1.00153 1.21119 0.96424 0.96425 0.96961 1.18205 0.91572 0.92706 1.05048 1.20641 0.93912 0.95804 0.99772 1.20719 0.95549 0.97648 1.05029 1.21064 0.99276 0.92408 1.00135 1.22394 0.94192 1.00554 1.00534 1.18465 0.93942 0.85951 0.95335 0.91461 0.88030 0.92721 0.89478 0.89651 0.93428 0.89837 0.86222 0.86466 0.86564 0.86342 0.86284 0.86625 0.87462 0.87048 0.80935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.97 11.76 55.56 0.65 -20.32 16 2 C 0.09 2.31 5.49 -17.35 -0.10 2.22 16 3 Si 0.91 18.80 29.56 -169.99 -5.02 13.77 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.54 -14.19 8.50 -37.54 -0.32 -14.51 16 8 H 0.07 1.76 6.12 -52.49 -0.32 1.44 16 9 C 0.55 15.13 7.35 -14.93 -0.11 15.02 16 10 O -0.56 -17.01 11.66 5.11 0.06 -16.95 16 11 N -0.57 -13.22 3.00 -115.53 -0.35 -13.57 16 12 C 0.08 1.42 6.00 -3.37 -0.02 1.40 16 13 C 0.04 0.66 5.94 -3.75 -0.02 0.64 16 14 N -0.48 -7.75 4.57 -172.26 -0.79 -8.54 16 15 C 0.09 1.28 4.68 -4.98 -0.02 1.26 16 16 C -0.07 -0.97 3.89 -104.63 -0.41 -1.38 16 17 C -0.10 -1.16 9.70 -39.58 -0.38 -1.55 16 18 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 19 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 20 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 21 C -0.09 -1.20 6.56 -39.58 -0.26 -1.46 16 22 C 0.02 0.44 4.88 -83.61 -0.41 0.04 16 23 C -0.08 -1.40 6.70 -39.31 -0.26 -1.66 16 24 C -0.17 -2.86 10.03 -39.58 -0.40 -3.26 16 25 C -0.11 -2.07 10.05 -39.55 -0.40 -2.46 16 26 C -0.16 -3.54 8.94 -39.39 -0.35 -3.89 16 27 C 0.16 3.63 6.33 -83.43 -0.53 3.10 16 28 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 29 H 0.10 1.83 6.09 -51.93 -0.32 1.51 16 30 H 0.05 0.93 6.97 -51.93 -0.36 0.57 16 31 H 0.09 1.04 7.85 -51.93 -0.41 0.63 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.05 0.71 7.10 -51.93 -0.37 0.34 16 34 H 0.08 0.94 7.79 -51.93 -0.40 0.54 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.73 7.85 -52.48 -0.41 1.32 16 40 H 0.12 1.89 6.50 -52.49 -0.34 1.55 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 43 H 0.17 4.53 4.96 -53.46 -0.26 4.26 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -31.50 343.04 -10.75 -42.25 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.29 Total: 9.92 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -5.18 Total: -11.73 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.48 Total: -42.43 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.06 Total: -16.95 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.50 -10.75 -42.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185843991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.934 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds