Wall clock time and date at job start Tue Mar 31 2020 13:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86803 * 119.99995 * 2 1 4 4 H 1.48497 * 109.47057 * 269.99976 * 3 2 1 5 5 H 1.48496 * 109.47159 * 29.99907 * 3 2 1 6 6 H 1.48508 * 109.46871 * 149.99883 * 3 2 1 7 7 C 1.40145 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.41718 * 120.00041 * 359.97438 * 7 2 1 10 10 O 1.21791 * 119.99629 * 351.93054 * 9 7 2 11 11 N 1.34777 * 120.00295 * 171.92278 * 9 7 2 12 12 C 1.47266 * 121.17468 * 353.90122 * 11 9 7 13 13 C 1.53496 * 107.23044 * 221.20466 * 12 11 9 14 14 N 1.46565 * 109.10708 * 298.31998 * 13 12 11 15 15 C 1.46897 * 110.99788 * 287.91402 * 14 13 12 16 16 C 1.50698 * 109.47209 * 192.63625 * 15 14 13 17 17 C 1.38230 * 120.00179 * 90.00047 * 16 15 14 18 18 C 1.38239 * 119.99991 * 179.97438 * 17 16 15 19 19 C 1.38238 * 120.00087 * 0.08872 * 18 17 16 20 20 C 1.38239 * 119.99907 * 359.86313 * 19 18 17 21 21 C 1.38237 * 119.99800 * 0.09719 * 20 19 18 22 22 C 1.39332 * 113.02214 * 53.37849 * 14 13 12 23 23 C 1.39186 * 118.88653 * 157.09404 * 22 14 13 24 24 C 1.38027 * 120.21566 * 179.75337 * 23 22 14 25 25 C 1.38464 * 120.36046 * 359.94474 * 24 23 22 26 26 C 1.38085 * 120.03272 * 0.16062 * 25 24 23 27 27 C 1.38899 * 119.98583 * 359.97375 * 26 25 24 28 28 H 0.97001 * 120.00270 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.90535 * 340.63213 * 12 11 9 30 30 H 1.09005 * 109.90469 * 101.68727 * 12 11 9 31 31 H 1.08996 * 109.53565 * 178.42980 * 13 12 11 32 32 H 1.09002 * 109.53188 * 58.20435 * 13 12 11 33 33 H 1.09007 * 109.47384 * 72.63667 * 15 14 13 34 34 H 1.08996 * 109.47543 * 312.63683 * 15 14 13 35 35 H 1.07998 * 119.99732 * 359.70108 * 17 16 15 36 36 H 1.08002 * 120.00217 * 179.97438 * 18 17 16 37 37 H 1.07999 * 120.00186 * 179.97438 * 19 18 17 38 38 H 1.07994 * 119.99799 * 180.02562 * 20 19 18 39 39 H 1.08004 * 119.99977 * 179.97438 * 21 20 19 40 40 H 1.07996 * 119.88869 * 359.69468 * 23 22 14 41 41 H 1.07995 * 119.81751 * 179.97438 * 24 23 22 42 42 H 1.08007 * 119.98047 * 180.14084 * 25 24 23 43 43 H 1.08001 * 120.00392 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4877 2.0464 -1.4000 5 1 1.4377 2.6527 0.7000 6 1 3.5378 1.4401 0.7001 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2136 -0.0001 9 6 1.2984 -2.4410 -0.0005 10 8 0.0896 -2.4462 0.1480 11 7 1.9622 -3.6024 -0.1651 12 6 3.4009 -3.6203 -0.4789 13 6 3.6224 -4.7125 -1.5345 14 7 3.2320 -6.0087 -0.9728 15 6 4.2048 -6.4625 0.0299 16 6 3.9511 -7.9117 0.3563 17 6 4.5833 -8.9044 -0.3687 18 6 4.3509 -10.2337 -0.0690 19 6 3.4849 -10.5703 0.9546 20 6 2.8534 -9.5775 1.6803 21 6 3.0865 -8.2482 1.3811 22 6 1.9399 -6.0097 -0.4512 23 6 1.2634 -7.2203 -0.3333 24 6 -0.0157 -7.2537 0.1845 25 6 -0.6365 -6.0849 0.5919 26 6 0.0223 -4.8767 0.4785 27 6 1.3086 -4.8337 -0.0440 28 1 -0.4850 0.8400 0.0004 29 1 3.7060 -2.6525 -0.8768 30 1 3.9740 -3.8491 0.4196 31 1 4.6751 -4.7394 -1.8157 32 1 3.0146 -4.4984 -2.4136 33 1 4.1011 -5.8628 0.9343 34 1 5.2141 -6.3506 -0.3662 35 1 5.2553 -8.6414 -1.1722 36 1 4.8445 -11.0094 -0.6357 37 1 3.3030 -11.6089 1.1885 38 1 2.1772 -9.8405 2.4802 39 1 2.5928 -7.4725 1.9477 40 1 1.7404 -8.1364 -0.6488 41 1 -0.5349 -8.1965 0.2727 42 1 -1.6366 -6.1184 0.9983 43 1 -0.4625 -3.9653 0.7960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185843991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:43 Heat of formation + Delta-G solvation = 30.344840 kcal Electronic energy + Delta-G solvation = -27331.768003 eV Core-core repulsion = 23727.591091 eV Total energy + Delta-G solvation = -3604.176912 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07750 -40.14968 -38.93535 -37.89921 -35.72094 -34.76752 -32.55300 -31.81259 -31.53329 -31.04277 -29.11417 -27.99468 -26.05125 -24.52750 -23.98911 -23.31322 -22.45969 -21.87782 -20.41118 -18.69190 -18.09156 -17.96335 -17.57679 -17.12366 -16.67213 -16.21766 -16.05260 -15.79491 -15.58500 -15.37863 -15.15625 -14.53429 -14.41681 -14.35367 -14.15852 -13.78538 -13.65792 -13.39614 -13.35589 -13.17662 -13.04889 -12.78661 -12.63676 -12.39019 -12.22460 -12.08527 -11.94324 -11.83575 -11.71028 -11.10842 -10.84817 -10.21582 -9.75833 -9.60597 -9.53474 -8.94736 -8.46491 -8.39461 -7.05697 0.43451 0.51934 0.60312 0.76713 1.36007 1.37173 1.53201 2.14368 2.31425 2.48953 2.76295 2.98152 3.17726 3.52461 3.83536 3.92747 3.98552 4.09779 4.19785 4.24996 4.25696 4.32373 4.39272 4.43724 4.56750 4.58735 4.64718 4.69448 4.76821 4.78872 4.87420 4.99042 5.17194 5.17962 5.19550 5.26739 5.34356 5.52398 5.67440 5.69082 5.72813 5.81045 5.87220 5.88052 5.99764 6.10823 6.21827 6.28063 6.61324 6.68974 7.22302 8.29848 8.50182 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.003781 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.898646 B = 7403.079558 C = 8271.805737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.033 3.967 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.560 4.560 8 H 0.095 0.905 9 C 0.531 3.469 10 O -0.605 6.605 11 N -0.583 5.583 12 C 0.075 3.925 13 C 0.049 3.951 14 N -0.480 5.480 15 C 0.096 3.904 16 C -0.090 4.090 17 C -0.103 4.103 18 C -0.127 4.127 19 C -0.120 4.120 20 C -0.130 4.130 21 C -0.109 4.109 22 C 0.036 3.964 23 C -0.072 4.072 24 C -0.153 4.153 25 C -0.112 4.112 26 C -0.191 4.191 27 C 0.127 3.873 28 H 0.280 0.720 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.114 0.886 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.135 0.865 41 H 0.145 0.855 42 H 0.128 0.872 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.086 -16.808 -0.581 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.186 4.186 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.170 1.170 7 C -0.594 4.594 8 H 0.113 0.887 9 C 0.343 3.657 10 O -0.493 6.493 11 N -0.306 5.306 12 C -0.049 4.049 13 C -0.078 4.078 14 N -0.197 5.197 15 C -0.028 4.028 16 C -0.091 4.091 17 C -0.122 4.122 18 C -0.145 4.145 19 C -0.138 4.138 20 C -0.148 4.148 21 C -0.128 4.128 22 C -0.063 4.063 23 C -0.092 4.092 24 C -0.173 4.173 25 C -0.132 4.132 26 C -0.212 4.212 27 C 0.027 3.973 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.132 0.868 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.147 0.853 39 H 0.112 0.888 40 H 0.153 0.847 41 H 0.163 0.837 42 H 0.146 0.854 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.402 -16.900 -0.909 20.407 hybrid contribution -0.455 1.826 0.799 2.044 sum 10.948 -15.074 -0.110 18.630 Atomic orbital electron populations 1.70142 1.09777 1.29643 1.33367 1.27059 0.95487 1.05167 0.90856 0.84970 0.78824 0.74535 0.79765 1.18107 1.19701 1.17007 1.20604 0.95517 0.90210 1.53073 0.88747 1.17498 0.86839 0.83407 0.77964 1.90410 1.16266 1.85994 1.56654 1.46130 1.10283 1.03986 1.70176 1.22562 0.80344 1.02608 0.99360 1.22639 1.03993 0.85150 0.96064 1.58918 0.99664 1.27841 1.33281 1.21244 0.96204 0.92201 0.93162 1.19689 0.98158 0.94707 0.96497 1.21194 0.99640 0.92491 0.98853 1.21434 0.98693 0.96365 0.97990 1.21432 0.96636 1.00005 0.95764 1.21261 1.00527 0.92324 1.00681 1.21028 0.97432 0.96742 0.97621 1.18381 0.92765 0.91785 1.03395 1.20868 0.93820 0.95719 0.98799 1.21084 0.95361 0.98134 1.02685 1.21214 0.99971 0.91817 1.00154 1.22085 0.95537 1.00456 1.03161 1.18733 0.94372 0.86763 0.97435 0.90987 0.88201 0.91703 0.84781 0.91496 0.95358 0.86756 0.84551 0.83778 0.84000 0.85276 0.88831 0.84722 0.83685 0.85364 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.68 11.76 21.85 0.26 -47.42 16 2 C 0.03 1.76 5.49 85.34 0.47 2.23 16 3 Si 1.00 39.12 29.56 68.60 2.03 41.15 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 7 C -0.56 -30.91 8.50 23.59 0.20 -30.71 16 8 H 0.09 4.61 6.12 -2.91 -0.02 4.59 16 9 C 0.53 31.29 7.35 85.10 0.63 31.91 16 10 O -0.61 -40.39 11.66 -4.64 -0.05 -40.44 16 11 N -0.58 -28.49 3.00 -637.61 -1.91 -30.40 16 12 C 0.08 2.76 6.00 86.40 0.52 3.28 16 13 C 0.05 1.47 5.94 86.53 0.51 1.98 16 14 N -0.48 -14.62 4.57 -698.91 -3.19 -17.82 16 15 C 0.10 2.43 4.68 85.56 0.40 2.83 16 16 C -0.09 -2.12 3.89 -19.87 -0.08 -2.20 16 17 C -0.10 -1.97 9.70 22.27 0.22 -1.76 16 18 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 19 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 20 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 21 C -0.11 -2.74 6.56 22.27 0.15 -2.59 16 22 C 0.04 1.35 4.88 38.49 0.19 1.53 16 23 C -0.07 -2.38 6.70 22.45 0.15 -2.23 16 24 C -0.15 -4.96 10.03 22.27 0.22 -4.73 16 25 C -0.11 -4.37 10.05 22.29 0.22 -4.15 16 26 C -0.19 -9.37 8.94 22.39 0.20 -9.17 16 27 C 0.13 5.92 6.33 38.32 0.24 6.16 16 28 H 0.28 14.99 8.29 -92.71 -0.77 14.23 16 29 H 0.10 3.63 6.09 -2.39 -0.01 3.61 16 30 H 0.06 2.21 6.97 -2.38 -0.02 2.20 16 31 H 0.13 2.72 7.85 -2.39 -0.02 2.70 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.03 0.83 7.10 -2.38 -0.02 0.81 16 34 H 0.11 2.16 7.79 -2.39 -0.02 2.14 16 35 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 39 H 0.09 2.77 7.85 -2.91 -0.02 2.75 16 40 H 0.14 3.99 6.50 -2.91 -0.02 3.97 16 41 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 42 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 43 H 0.13 7.48 4.96 -18.31 -0.09 7.39 16 Total: -1.00 -76.15 343.04 2.99 -73.16 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: 0.96 Total: 35.46 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 4.91 Total: -13.68 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -4.85 Total: -95.64 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.05 Total: -40.44 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -76.15 2.99 -73.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185843991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.501 kcal (2) G-P(sol) polarization free energy of solvation -76.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds