Wall clock time and date at job start Tue Mar 31 2020 13:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86804 * 120.00138 * 2 1 4 4 H 1.48498 * 109.46995 * 269.99950 * 3 2 1 5 5 H 1.48500 * 109.47011 * 29.99750 * 3 2 1 6 6 H 1.48497 * 109.47303 * 149.99997 * 3 2 1 7 7 C 1.39891 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00447 * 175.55568 * 7 2 1 9 9 C 1.41161 * 120.00189 * 355.56482 * 7 2 1 10 10 C 1.40863 * 120.16353 * 214.78632 * 9 7 2 11 11 C 1.36371 * 119.82759 * 179.97438 * 10 9 7 12 12 C 1.39484 * 120.16809 * 359.97438 * 11 10 9 13 13 N 1.39243 * 119.83330 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99798 * 35.30407 * 13 12 11 15 15 O 1.21586 * 120.00031 * 355.71337 * 14 13 12 16 16 N 1.34773 * 119.99901 * 175.70746 * 14 13 12 17 17 C 1.46500 * 119.99689 * 180.02562 * 16 14 13 18 18 C 1.53009 * 109.47071 * 180.02562 * 17 16 14 19 19 H 1.09005 * 112.88041 * 46.66500 * 18 17 16 20 20 C 1.52258 * 113.20502 * 178.02822 * 18 17 16 21 21 C 1.50566 * 87.22924 * 114.71878 * 20 18 17 22 22 C 1.38806 * 147.30625 * 179.57563 * 21 20 18 23 23 C 1.38064 * 120.09445 * 179.74224 * 22 21 20 24 24 C 1.38233 * 119.97873 * 0.25930 * 23 22 21 25 25 C 1.38063 * 119.98256 * 359.97438 * 24 23 22 26 26 C 1.37723 * 92.76660 * 359.79743 * 21 20 18 27 27 C 1.39477 * 120.33450 * 0.26285 * 12 11 10 28 28 C 1.36381 * 120.16434 * 359.47691 * 27 12 11 29 29 H 0.97008 * 120.00243 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.08675 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.91683 * 180.02562 * 11 10 9 32 32 H 0.96991 * 120.00398 * 215.30211 * 13 12 11 33 33 H 0.96997 * 120.00065 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.47681 * 60.00442 * 17 16 14 35 35 H 1.09003 * 109.47479 * 299.99907 * 17 16 14 36 36 H 1.08995 * 113.97775 * 0.07614 * 20 18 17 37 37 H 1.09001 * 113.27977 * 229.25709 * 20 18 17 38 38 H 1.07998 * 119.95091 * 0.02562 * 22 21 20 39 39 H 1.07999 * 120.01412 * 180.23162 * 23 22 21 40 40 H 1.08004 * 120.00895 * 180.02562 * 24 23 22 41 41 H 1.08007 * 119.95410 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.91779 * 179.74170 * 27 12 11 43 43 H 1.08004 * 120.08411 * 180.27766 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4402 0.7000 7 6 2.0082 -1.2115 0.0005 8 1 3.0858 -1.2130 -0.0719 9 6 1.3057 -2.4321 0.0956 10 6 1.8649 -3.5178 0.7976 11 6 1.1799 -4.6938 0.8856 12 6 -0.0715 -4.8229 0.2832 13 7 -0.7645 -6.0269 0.3769 14 6 -0.6819 -6.7662 1.5008 15 8 0.0582 -6.4219 2.4020 16 7 -1.4197 -7.8871 1.6258 17 6 -1.3302 -8.6904 2.8477 18 6 -2.2613 -9.8991 2.7327 19 1 -2.1697 -10.4153 1.7770 20 6 -2.1992 -10.8215 3.9425 21 6 -3.6301 -10.4405 4.2149 22 6 -4.7459 -10.5947 5.0261 23 6 -5.9064 -9.9012 4.7462 24 6 -5.9596 -9.0560 3.6537 25 6 -4.8520 -8.9055 2.8433 26 6 -3.6847 -9.6025 3.1234 27 6 -0.6295 -3.7539 -0.4177 28 6 0.0413 -2.5700 -0.5098 29 1 -0.4851 0.8401 -0.0004 30 1 2.8336 -3.4192 1.2649 31 1 1.6071 -5.5270 1.4237 32 1 -1.3068 -6.3336 -0.3665 33 1 -2.0099 -8.1620 0.9068 34 1 -1.6257 -8.0839 3.7038 35 1 -0.3045 -9.0339 2.9825 36 1 -1.5053 -10.4918 4.7157 37 1 -2.0700 -11.8710 3.6779 38 1 -4.7047 -11.2546 5.8800 39 1 -6.7726 -10.0193 5.3804 40 1 -6.8671 -8.5129 3.4345 41 1 -4.8942 -8.2453 1.9895 42 1 -1.5970 -3.8626 -0.8851 43 1 -0.3941 -1.7416 -1.0491 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193473778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:04 Heat of formation + Delta-G solvation = 57.647954 kcal Electronic energy + Delta-G solvation = -24968.627356 eV Core-core repulsion = 21365.634396 eV Total energy + Delta-G solvation = -3602.992960 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.07644 -39.76274 -37.46428 -36.34151 -34.43361 -33.97378 -32.78285 -30.99610 -29.56022 -29.10393 -28.18779 -26.44042 -24.69702 -23.52356 -21.76195 -21.47977 -20.83664 -20.35454 -19.80982 -17.88164 -17.20187 -17.04475 -16.79947 -15.79367 -15.36362 -15.17486 -15.03793 -14.68134 -14.52580 -13.96940 -13.76198 -13.52607 -13.27957 -13.02001 -12.66944 -12.58659 -12.39855 -12.16714 -12.05297 -11.75230 -11.64920 -11.29810 -11.14224 -11.08936 -10.93768 -10.68732 -10.64717 -10.05446 -9.49912 -9.41383 -9.19113 -9.06524 -8.94531 -8.86315 -8.79092 -7.48387 -6.77884 -6.56025 -4.28194 1.06506 1.12527 2.71170 3.01533 3.12468 3.12860 3.17218 3.22070 3.49267 3.74353 3.85136 4.02427 4.13540 4.26914 4.59000 4.71358 4.76262 4.79045 4.85033 4.95533 5.28213 5.33154 5.38036 5.51112 5.59902 5.63121 5.70949 5.84334 5.91173 6.12878 6.24304 6.25160 6.45353 6.49652 6.61371 6.73209 6.82168 6.87539 7.10234 7.20798 7.32512 7.46126 7.70944 7.91963 8.02662 8.15201 8.36715 8.51826 8.69647 8.98296 8.98954 9.14574 10.35177 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.002140 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.862118 B =13080.555785 C =13605.640134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.087 4.087 12 C 0.025 3.975 13 N -0.668 5.668 14 C 0.695 3.305 15 O -0.578 6.578 16 N -0.751 5.751 17 C 0.157 3.843 18 C -0.056 4.056 19 H 0.104 0.896 20 C -0.065 4.065 21 C -0.131 4.131 22 C -0.097 4.097 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.088 4.088 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.141 4.141 29 H 0.277 0.723 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.391 0.609 33 H 0.392 0.608 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.697 -19.956 4.041 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.094 3.906 10 C -0.224 4.224 11 C -0.107 4.107 12 C -0.068 4.068 13 N -0.313 5.313 14 C 0.396 3.604 15 O -0.455 6.455 16 N -0.408 5.408 17 C 0.032 3.968 18 C -0.075 4.075 19 H 0.122 0.878 20 C -0.102 4.102 21 C -0.131 4.131 22 C -0.115 4.115 23 C -0.136 4.136 24 C -0.137 4.137 25 C -0.106 4.106 26 C -0.125 4.125 27 C -0.144 4.144 28 C -0.161 4.161 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.224 0.776 33 H 0.225 0.775 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.108 0.892 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.222 -19.461 4.917 22.526 hybrid contribution -0.545 0.567 -0.545 0.957 sum -10.767 -18.894 4.372 22.182 Atomic orbital electron populations 1.69767 1.07248 1.28558 1.38599 1.25863 0.94933 1.01095 0.92668 0.86211 0.80244 0.80609 0.78966 1.19595 1.20366 1.18768 1.19472 0.94667 0.90218 1.44908 0.90696 1.17716 0.92352 0.92031 0.88468 1.20808 1.01183 0.94959 1.05425 1.20426 0.92779 0.97951 0.99568 1.17076 0.93688 0.85026 1.11010 1.42107 1.51653 1.22168 1.15414 1.16007 0.81291 0.80024 0.83120 1.90912 1.42216 1.71444 1.40897 1.45041 1.48390 1.26827 1.20572 1.20976 0.98672 0.89831 0.87281 1.21341 0.89933 0.96132 1.00066 0.87826 1.21455 0.91960 1.00134 0.96661 1.21827 0.95968 0.98847 0.96417 1.20412 0.91724 1.00110 0.99242 1.20995 0.97628 0.97206 0.97772 1.21013 0.98227 0.99074 0.95395 1.20483 0.91512 0.98773 0.99853 1.21779 0.95111 0.97703 0.97862 1.20292 0.98353 0.93075 1.02722 1.21178 0.97298 0.95457 1.02132 0.91251 0.88649 0.87342 0.77588 0.77485 0.91349 0.90886 0.88488 0.88802 0.86448 0.85744 0.85670 0.86344 0.89200 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.56 10.59 55.54 0.59 -20.97 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 19.35 29.56 -169.99 -5.03 14.33 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.53 9.02 -37.85 -0.34 -12.88 16 8 H 0.07 1.95 7.85 -52.48 -0.41 1.54 16 9 C 0.10 2.65 5.55 -106.80 -0.59 2.05 16 10 C -0.20 -5.28 9.74 -39.26 -0.38 -5.66 16 11 C -0.09 -2.14 8.61 -39.79 -0.34 -2.48 16 12 C 0.02 0.56 6.31 -83.57 -0.53 0.03 16 13 N -0.67 -11.94 5.31 -14.10 -0.07 -12.01 16 14 C 0.69 12.52 8.40 -86.92 -0.73 11.79 16 15 O -0.58 -13.05 13.76 5.29 0.07 -12.98 16 16 N -0.75 -9.45 5.56 -65.22 -0.36 -9.81 16 17 C 0.16 1.77 5.37 -4.04 -0.02 1.75 16 18 C -0.06 -0.47 3.91 -92.51 -0.36 -0.83 16 19 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 20 C -0.06 -0.47 7.76 -28.62 -0.22 -0.69 16 21 C -0.13 -1.22 7.42 -104.96 -0.78 -2.00 16 22 C -0.10 -0.85 10.06 -39.44 -0.40 -1.25 16 23 C -0.12 -1.00 10.04 -39.65 -0.40 -1.40 16 24 C -0.12 -1.07 10.04 -39.65 -0.40 -1.47 16 25 C -0.09 -0.87 10.06 -39.43 -0.40 -1.27 16 26 C -0.12 -1.23 6.86 -104.96 -0.72 -1.95 16 27 C -0.12 -2.87 9.90 -39.79 -0.39 -3.27 16 28 C -0.14 -3.67 8.61 -39.26 -0.34 -4.01 16 29 H 0.28 6.71 8.30 -40.82 -0.34 6.38 16 30 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 31 H 0.11 2.66 6.22 -52.49 -0.33 2.33 16 32 H 0.39 5.41 8.83 -40.82 -0.36 5.05 16 33 H 0.39 3.70 8.49 -40.82 -0.35 3.36 16 34 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.66 7.98 -51.93 -0.41 0.25 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 41 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 42 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 43 H 0.13 3.54 6.13 -52.48 -0.32 3.22 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -32.72 363.78 -12.29 -45.01 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -5.54 Total: 12.81 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -7.44 Total: -21.85 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.15 Total: -42.80 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.07 Total: -12.98 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.72 -12.29 -45.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193473778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.657 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds