Wall clock time and date at job start Tue Mar 31 2020 13:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86804 * 120.00138 * 2 1 4 4 H 1.48498 * 109.46995 * 269.99950 * 3 2 1 5 5 H 1.48500 * 109.47011 * 29.99750 * 3 2 1 6 6 H 1.48497 * 109.47303 * 149.99997 * 3 2 1 7 7 C 1.39891 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00447 * 175.55568 * 7 2 1 9 9 C 1.41161 * 120.00189 * 355.56482 * 7 2 1 10 10 C 1.40863 * 120.16353 * 214.78632 * 9 7 2 11 11 C 1.36371 * 119.82759 * 179.97438 * 10 9 7 12 12 C 1.39484 * 120.16809 * 359.97438 * 11 10 9 13 13 N 1.39243 * 119.83330 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99798 * 35.30407 * 13 12 11 15 15 O 1.21586 * 120.00031 * 355.71337 * 14 13 12 16 16 N 1.34773 * 119.99901 * 175.70746 * 14 13 12 17 17 C 1.46500 * 119.99689 * 180.02562 * 16 14 13 18 18 C 1.53009 * 109.47071 * 180.02562 * 17 16 14 19 19 H 1.09005 * 112.88041 * 46.66500 * 18 17 16 20 20 C 1.52258 * 113.20502 * 178.02822 * 18 17 16 21 21 C 1.50566 * 87.22924 * 114.71878 * 20 18 17 22 22 C 1.38806 * 147.30625 * 179.57563 * 21 20 18 23 23 C 1.38064 * 120.09445 * 179.74224 * 22 21 20 24 24 C 1.38233 * 119.97873 * 0.25930 * 23 22 21 25 25 C 1.38063 * 119.98256 * 359.97438 * 24 23 22 26 26 C 1.37723 * 92.76660 * 359.79743 * 21 20 18 27 27 C 1.39477 * 120.33450 * 0.26285 * 12 11 10 28 28 C 1.36381 * 120.16434 * 359.47691 * 27 12 11 29 29 H 0.97008 * 120.00243 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.08675 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.91683 * 180.02562 * 11 10 9 32 32 H 0.96991 * 120.00398 * 215.30211 * 13 12 11 33 33 H 0.96997 * 120.00065 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.47681 * 60.00442 * 17 16 14 35 35 H 1.09003 * 109.47479 * 299.99907 * 17 16 14 36 36 H 1.08995 * 113.97775 * 0.07614 * 20 18 17 37 37 H 1.09001 * 113.27977 * 229.25709 * 20 18 17 38 38 H 1.07998 * 119.95091 * 0.02562 * 22 21 20 39 39 H 1.07999 * 120.01412 * 180.23162 * 23 22 21 40 40 H 1.08004 * 120.00895 * 180.02562 * 24 23 22 41 41 H 1.08007 * 119.95410 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.91779 * 179.74170 * 27 12 11 43 43 H 1.08004 * 120.08411 * 180.27766 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4402 0.7000 7 6 2.0082 -1.2115 0.0005 8 1 3.0858 -1.2130 -0.0719 9 6 1.3057 -2.4321 0.0956 10 6 1.8649 -3.5178 0.7976 11 6 1.1799 -4.6938 0.8856 12 6 -0.0715 -4.8229 0.2832 13 7 -0.7645 -6.0269 0.3769 14 6 -0.6819 -6.7662 1.5008 15 8 0.0582 -6.4219 2.4020 16 7 -1.4197 -7.8871 1.6258 17 6 -1.3302 -8.6904 2.8477 18 6 -2.2613 -9.8991 2.7327 19 1 -2.1697 -10.4153 1.7770 20 6 -2.1992 -10.8215 3.9425 21 6 -3.6301 -10.4405 4.2149 22 6 -4.7459 -10.5947 5.0261 23 6 -5.9064 -9.9012 4.7462 24 6 -5.9596 -9.0560 3.6537 25 6 -4.8520 -8.9055 2.8433 26 6 -3.6847 -9.6025 3.1234 27 6 -0.6295 -3.7539 -0.4177 28 6 0.0413 -2.5700 -0.5098 29 1 -0.4851 0.8401 -0.0004 30 1 2.8336 -3.4192 1.2649 31 1 1.6071 -5.5270 1.4237 32 1 -1.3068 -6.3336 -0.3665 33 1 -2.0099 -8.1620 0.9068 34 1 -1.6257 -8.0839 3.7038 35 1 -0.3045 -9.0339 2.9825 36 1 -1.5053 -10.4918 4.7157 37 1 -2.0700 -11.8710 3.6779 38 1 -4.7047 -11.2546 5.8800 39 1 -6.7726 -10.0193 5.3804 40 1 -6.8671 -8.5129 3.4345 41 1 -4.8942 -8.2453 1.9895 42 1 -1.5970 -3.8626 -0.8851 43 1 -0.3941 -1.7416 -1.0491 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193473778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:03 Heat of formation + Delta-G solvation = 39.377552 kcal Electronic energy + Delta-G solvation = -24969.419620 eV Core-core repulsion = 21365.634396 eV Total energy + Delta-G solvation = -3603.785224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83122 -41.20075 -39.23051 -37.19444 -36.12540 -35.22996 -34.54348 -31.68236 -31.46106 -30.79964 -29.25765 -27.38971 -26.35295 -24.33507 -23.37393 -22.67051 -22.27915 -21.70137 -20.79192 -19.38097 -19.05698 -18.29667 -17.68794 -17.10853 -16.71176 -16.47012 -16.04643 -15.82834 -15.69407 -15.48692 -15.06282 -14.66211 -14.49751 -14.41798 -13.97551 -13.89357 -13.58684 -13.42577 -13.22462 -13.04697 -12.86488 -12.83374 -12.74954 -12.47583 -12.44662 -11.82383 -11.75143 -11.39163 -11.33046 -11.21989 -10.99439 -10.64794 -10.09508 -9.73477 -9.53818 -9.44144 -8.66930 -8.47930 -6.30245 0.39862 0.45213 0.86612 1.16673 1.40129 1.47856 1.54936 1.75215 2.21798 2.26337 2.82168 2.83470 3.17211 3.34319 3.50960 3.69743 3.73308 3.85987 4.20120 4.22664 4.27587 4.41234 4.55468 4.60309 4.69139 4.71931 4.78234 4.87364 4.95312 5.00555 5.15659 5.16370 5.17229 5.21851 5.34948 5.45284 5.48024 5.48511 5.59552 5.71451 5.81850 5.84245 6.05498 6.09483 6.13798 6.27542 6.42286 6.70725 6.99228 7.03473 7.16676 7.66547 8.44703 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.002140 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.862118 B =13080.555785 C =13605.640134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.026 3.974 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.498 4.498 8 H 0.072 0.928 9 C 0.064 3.936 10 C -0.219 4.219 11 C -0.098 4.098 12 C 0.042 3.958 13 N -0.659 5.659 14 C 0.693 3.307 15 O -0.625 6.625 16 N -0.726 5.726 17 C 0.158 3.842 18 C -0.043 4.043 19 H 0.126 0.874 20 C -0.058 4.058 21 C -0.145 4.145 22 C -0.109 4.109 23 C -0.124 4.124 24 C -0.132 4.132 25 C -0.108 4.108 26 C -0.147 4.147 27 C -0.121 4.121 28 C -0.158 4.158 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.415 0.585 33 H 0.412 0.588 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.134 0.866 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.870 -21.365 3.890 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.062 3.938 10 C -0.239 4.239 11 C -0.119 4.119 12 C -0.052 4.052 13 N -0.307 5.307 14 C 0.393 3.607 15 O -0.506 6.506 16 N -0.383 5.383 17 C 0.034 3.966 18 C -0.062 4.062 19 H 0.144 0.856 20 C -0.095 4.095 21 C -0.145 4.145 22 C -0.127 4.127 23 C -0.142 4.142 24 C -0.149 4.149 25 C -0.126 4.126 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.178 4.178 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.251 0.749 33 H 0.248 0.752 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.152 0.848 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.454 -20.949 4.730 24.339 hybrid contribution -0.302 0.823 -0.441 0.981 sum -11.756 -20.126 4.289 23.699 Atomic orbital electron populations 1.69831 1.08549 1.29851 1.38902 1.26734 0.95829 1.04293 0.91668 0.85108 0.78648 0.75854 0.79463 1.18361 1.19468 1.18735 1.19700 0.94786 0.91325 1.47065 0.90998 1.18035 0.93462 0.92714 0.89625 1.20928 1.01583 0.95507 1.05890 1.20531 0.93775 0.97484 1.00078 1.17091 0.92941 0.86459 1.08696 1.41871 1.51470 1.20763 1.16567 1.16188 0.81230 0.80888 0.82369 1.90889 1.44364 1.72864 1.42457 1.44830 1.47012 1.24898 1.21555 1.21048 0.99609 0.90289 0.85660 1.21287 0.88202 0.94941 1.01743 0.85602 1.21509 0.90746 1.01179 0.96021 1.22202 0.97076 0.98942 0.96324 1.20736 0.91769 1.00435 0.99792 1.21331 0.98369 0.96665 0.97793 1.21303 0.98682 0.99401 0.95547 1.20715 0.92102 0.99287 1.00456 1.22039 0.95728 0.98279 0.98612 1.20530 0.99328 0.92004 1.02266 1.21170 0.97463 0.96390 1.02792 0.90560 0.88676 0.87434 0.74854 0.75180 0.93708 0.90744 0.88164 0.86440 0.84766 0.83664 0.84210 0.86006 0.85768 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.37 10.59 21.82 0.23 -45.14 16 2 C 0.03 1.37 5.42 85.24 0.46 1.83 16 3 Si 0.99 39.95 29.56 68.60 2.03 41.97 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.50 -27.94 9.02 23.39 0.21 -27.73 16 8 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 9 C 0.06 3.61 5.55 -21.28 -0.12 3.50 16 10 C -0.22 -11.74 9.74 22.48 0.22 -11.52 16 11 C -0.10 -4.90 8.61 22.13 0.19 -4.71 16 12 C 0.04 1.89 6.31 38.56 0.24 2.13 16 13 N -0.66 -22.29 5.31 -316.78 -1.68 -23.98 16 14 C 0.69 24.03 8.40 179.05 1.50 25.53 16 15 O -0.63 -28.17 13.76 -3.99 -0.05 -28.22 16 16 N -0.73 -16.78 5.56 -478.52 -2.66 -19.44 16 17 C 0.16 3.33 5.37 86.38 0.46 3.79 16 18 C -0.04 -0.62 3.91 -12.02 -0.05 -0.67 16 19 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 20 C -0.06 -0.70 7.76 29.37 0.23 -0.47 16 21 C -0.15 -2.47 7.42 -20.08 -0.15 -2.62 16 22 C -0.11 -1.75 10.06 22.36 0.22 -1.52 16 23 C -0.12 -1.90 10.04 22.23 0.22 -1.68 16 24 C -0.13 -2.20 10.04 22.23 0.22 -1.98 16 25 C -0.11 -2.01 10.06 22.37 0.22 -1.78 16 26 C -0.15 -2.66 6.86 -20.08 -0.14 -2.80 16 27 C -0.12 -5.51 9.90 22.13 0.22 -5.29 16 28 C -0.16 -8.40 8.61 22.48 0.19 -8.21 16 29 H 0.28 13.87 8.30 -92.70 -0.77 13.10 16 30 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 31 H 0.11 5.35 6.22 -2.91 -0.02 5.33 16 32 H 0.41 10.19 8.83 -92.71 -0.82 9.37 16 33 H 0.41 6.53 8.49 -92.71 -0.79 5.74 16 34 H 0.04 1.18 8.04 -2.39 -0.02 1.16 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.10 1.17 7.98 -2.39 -0.02 1.15 16 37 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 43 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 Total: -1.00 -73.07 363.78 1.69 -71.38 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.55 Total: 37.62 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 4.38 Total: -34.19 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -4.11 Total: -88.56 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.05 Total: -28.22 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.97 kcal Total: -73.07 1.69 -71.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193473778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.759 kcal (2) G-P(sol) polarization free energy of solvation -73.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds