Wall clock time and date at job start Tue Mar 31 2020 13:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86793 * 119.99998 * 2 1 4 4 H 1.48502 * 109.47571 * 269.99832 * 3 2 1 5 5 H 1.48506 * 109.47179 * 29.99985 * 3 2 1 6 6 H 1.48504 * 109.47122 * 150.00051 * 3 2 1 7 7 C 1.39903 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99920 * 175.69411 * 7 2 1 9 9 C 1.41156 * 119.99796 * 355.69194 * 7 2 1 10 10 C 1.40872 * 120.16176 * 214.72664 * 9 7 2 11 11 C 1.36371 * 119.82797 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.17018 * 0.02562 * 11 10 9 13 13 N 1.39233 * 119.83332 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99623 * 144.72036 * 13 12 11 15 15 O 1.21276 * 120.00243 * 4.03846 * 14 13 12 16 16 C 1.50702 * 119.99883 * 184.03561 * 14 13 12 17 17 H 1.08999 * 109.25538 * 300.00685 * 16 14 13 18 18 C 1.52722 * 109.25680 * 180.52566 * 16 14 13 19 19 C 1.53314 * 108.45068 * 188.38704 * 18 16 14 20 20 C 1.52770 * 108.32324 * 69.88884 * 19 18 16 21 21 C 1.50486 * 110.56288 * 309.13429 * 20 19 18 22 22 C 1.39179 * 117.97587 * 197.27594 * 21 20 19 23 23 C 1.38416 * 118.86960 * 180.55847 * 22 21 20 24 24 C 1.38238 * 118.83548 * 359.97438 * 23 22 21 25 25 N 1.31506 * 120.61597 * 359.85885 * 24 23 22 26 26 C 1.32699 * 122.40273 * 0.04192 * 25 24 23 27 27 C 1.39480 * 120.33029 * 0.25036 * 12 11 10 28 28 C 1.36376 * 120.17153 * 359.44741 * 27 12 11 29 29 H 0.97004 * 120.00186 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.08591 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.91359 * 180.02562 * 11 10 9 32 32 H 0.96993 * 120.00634 * 324.44858 * 13 12 11 33 33 H 1.08989 * 109.64464 * 308.11346 * 18 16 14 34 34 H 1.08996 * 109.63774 * 68.74446 * 18 16 14 35 35 H 1.08994 * 109.71218 * 310.18157 * 19 18 16 36 36 H 1.08994 * 109.72538 * 189.60844 * 19 18 16 37 37 H 1.09003 * 109.25690 * 188.85191 * 20 19 18 38 38 H 1.08998 * 109.25670 * 69.41074 * 20 19 18 39 39 H 1.07998 * 120.56739 * 0.53710 * 22 21 20 40 40 H 1.07994 * 120.58050 * 179.97438 * 23 22 21 41 41 H 1.08006 * 119.68617 * 179.87885 * 24 23 22 42 42 H 1.08000 * 119.91456 * 179.72727 * 27 12 11 43 43 H 1.07994 * 120.08646 * 180.24975 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4401 2.6527 0.7001 6 1 3.5403 1.4401 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0859 -1.2130 -0.0697 9 6 1.3054 -2.4323 0.0929 10 6 1.8638 -3.5192 0.7937 11 6 1.1791 -4.6956 0.8783 12 6 -0.0708 -4.8242 0.2726 13 7 -0.7635 -6.0286 0.3629 14 6 -2.1077 -6.0271 0.4609 15 8 -2.7192 -4.9817 0.3968 16 6 -2.8509 -7.3244 0.6500 17 1 -2.6466 -7.9821 -0.1948 18 6 -4.3501 -7.0409 0.7167 19 6 -5.0710 -8.3332 1.1177 20 6 -4.7364 -8.6368 2.5770 21 6 -3.2485 -8.5937 2.7982 22 6 -2.7418 -9.1924 3.9480 23 6 -1.3770 -9.1534 4.1758 24 6 -0.5648 -8.5215 3.2528 25 7 -1.0787 -7.9693 2.1756 26 6 -2.3807 -7.9867 1.9196 27 6 -0.6275 -3.7543 -0.4279 28 6 0.0425 -2.5697 -0.5158 29 1 -0.4850 0.8401 0.0004 30 1 2.8316 -3.4212 1.2629 31 1 1.6057 -5.5297 1.4156 32 1 -0.2791 -6.8688 0.3512 33 1 -4.5441 -6.2671 1.4593 34 1 -4.7046 -6.7125 -0.2603 35 1 -4.7331 -9.1541 0.4852 36 1 -6.1475 -8.2035 1.0070 37 1 -5.1094 -9.6287 2.8326 38 1 -5.2166 -7.8969 3.2173 39 1 -3.4021 -9.6788 4.6506 40 1 -0.9542 -9.6087 5.0591 41 1 0.5018 -8.4812 3.4178 42 1 -1.5938 -3.8627 -0.8980 43 1 -0.3917 -1.7409 -1.0551 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193883602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:11 Heat of formation + Delta-G solvation = 13.236069 kcal Electronic energy + Delta-G solvation = -26310.214968 eV Core-core repulsion = 22705.296164 eV Total energy + Delta-G solvation = -3604.918804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.06288 -39.27246 -37.35423 -36.34298 -34.26257 -33.58482 -32.61754 -30.62264 -30.19906 -29.36969 -28.68080 -25.38720 -24.36782 -23.39567 -23.07810 -21.33649 -20.81846 -19.96415 -19.35309 -17.22717 -17.16062 -16.73830 -16.49243 -16.01691 -15.70465 -15.07060 -14.60371 -14.41543 -13.97295 -13.87619 -13.77177 -13.53840 -13.13630 -12.94121 -12.71941 -12.66209 -12.39974 -12.01132 -11.95926 -11.60620 -11.38432 -11.26136 -11.09584 -11.03664 -10.84223 -10.72378 -10.39499 -9.91301 -9.78100 -9.75632 -9.60182 -9.30887 -9.01813 -8.75717 -8.54136 -7.40705 -6.74360 -6.50547 -4.23521 0.93926 1.10859 2.68645 3.07556 3.14893 3.17800 3.21021 3.39066 3.63935 3.93518 4.05185 4.10012 4.38060 4.55916 4.64659 4.76852 4.81906 4.82960 4.95210 5.05523 5.25731 5.29910 5.37789 5.47990 5.57092 5.61066 5.70033 5.76338 5.82629 5.96046 6.03385 6.12824 6.26363 6.29473 6.49886 6.54255 6.97009 7.13708 7.16267 7.32387 7.42521 7.75032 7.82590 7.85902 8.11523 8.19017 8.35993 8.49484 8.77382 8.95894 9.02856 9.14674 10.40474 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.003008 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.353587 B = 9305.793493 C =10032.998449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.465 4.465 8 H 0.074 0.926 9 C 0.098 3.902 10 C -0.204 4.204 11 C -0.112 4.112 12 C 0.013 3.987 13 N -0.633 5.633 14 C 0.510 3.490 15 O -0.532 6.532 16 C -0.056 4.056 17 H 0.110 0.890 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.078 4.078 21 C -0.121 4.121 22 C -0.078 4.078 23 C -0.175 4.175 24 C 0.108 3.892 25 N -0.479 5.479 26 C 0.141 3.859 27 C -0.097 4.097 28 C -0.143 4.143 29 H 0.277 0.723 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.403 0.597 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.106 0.894 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.712 -19.310 5.301 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.496 4.496 8 H 0.092 0.908 9 C 0.096 3.904 10 C -0.224 4.224 11 C -0.132 4.132 12 C -0.080 4.080 13 N -0.276 5.276 14 C 0.296 3.704 15 O -0.410 6.410 16 C -0.078 4.078 17 H 0.127 0.873 18 C -0.139 4.139 19 C -0.158 4.158 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.105 4.105 23 C -0.195 4.195 24 C -0.052 4.052 25 N -0.188 5.188 26 C 0.006 3.994 27 C -0.117 4.117 28 C -0.163 4.163 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.239 0.761 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.175 0.825 42 H 0.124 0.876 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.792 -18.000 4.676 20.163 hybrid contribution 0.217 -0.128 1.000 1.031 sum -7.575 -18.128 5.676 20.450 Atomic orbital electron populations 1.69799 1.07201 1.28559 1.38149 1.25871 0.94909 1.01049 0.92774 0.86231 0.80161 0.80751 0.78970 1.19594 1.20380 1.18837 1.19453 0.94545 0.90265 1.45309 0.90782 1.17705 0.92286 0.91845 0.88611 1.20685 1.01062 0.94704 1.05976 1.20082 0.95100 0.97409 1.00650 1.17348 0.94942 0.87297 1.08369 1.42999 1.05845 1.08545 1.70216 1.20021 0.82994 0.89714 0.77711 1.90702 1.67547 1.32631 1.50074 1.20211 0.96780 0.95698 0.95104 0.87277 1.21407 0.90976 0.97642 1.03842 1.21605 1.00788 0.97960 0.95436 1.20454 0.90660 1.02389 0.98049 1.20406 0.97109 0.99434 0.95319 1.21563 0.95591 0.97204 0.96097 1.22116 0.94453 1.01753 1.01168 1.22680 1.00544 0.92618 0.89347 1.67414 1.13816 1.16425 1.21115 1.20620 0.88801 0.94829 0.95161 1.20652 0.99037 0.93372 0.98671 1.21288 0.97001 0.95990 1.02068 0.91218 0.88720 0.89160 0.76086 0.90205 0.90070 0.91463 0.90649 0.90567 0.90158 0.84935 0.84781 0.82528 0.87585 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.28 10.60 55.55 0.59 -21.69 16 2 C 0.07 1.82 5.42 -17.34 -0.09 1.72 16 3 Si 0.91 19.69 29.56 -169.99 -5.03 14.66 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.81 9.03 -37.85 -0.34 -13.15 16 8 H 0.07 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 10 C -0.20 -5.15 9.74 -39.26 -0.38 -5.54 16 11 C -0.11 -2.60 9.90 -39.79 -0.39 -2.99 16 12 C 0.01 0.31 6.30 -83.57 -0.53 -0.22 16 13 N -0.63 -12.28 4.59 -9.74 -0.04 -12.33 16 14 C 0.51 9.68 6.88 -10.98 -0.08 9.60 16 15 O -0.53 -12.23 13.27 5.56 0.07 -12.16 16 16 C -0.06 -0.76 2.70 -93.05 -0.25 -1.02 16 17 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 18 C -0.10 -1.20 4.65 -26.71 -0.12 -1.32 16 19 C -0.12 -1.01 5.99 -26.69 -0.16 -1.17 16 20 C -0.08 -0.65 5.68 -28.10 -0.16 -0.81 16 21 C -0.12 -1.31 5.74 -104.61 -0.60 -1.91 16 22 C -0.08 -0.73 9.75 -39.17 -0.38 -1.11 16 23 C -0.18 -1.62 10.12 -39.52 -0.40 -2.02 16 24 C 0.11 1.22 11.19 -17.69 -0.20 1.02 16 25 N -0.48 -6.65 7.67 -9.51 -0.07 -6.72 16 26 C 0.14 1.88 6.20 -82.44 -0.51 1.36 16 27 C -0.10 -2.53 8.61 -39.79 -0.34 -2.87 16 28 C -0.14 -3.99 8.61 -39.26 -0.34 -4.33 16 29 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 30 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.40 6.78 7.40 -40.82 -0.30 6.47 16 33 H 0.08 1.12 7.78 -51.94 -0.40 0.71 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.48 8.13 -51.93 -0.42 0.06 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 42 H 0.11 2.75 6.25 -52.49 -0.33 2.43 16 43 H 0.13 3.75 6.13 -52.49 -0.32 3.43 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -32.82 351.86 -10.60 -43.42 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.55 Total: 12.14 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -5.87 Total: -22.62 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.47 Total: -40.74 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.82 -10.60 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193883602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.654 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds