Wall clock time and date at job start Tue Mar 31 2020 13:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86793 * 119.99998 * 2 1 4 4 H 1.48502 * 109.47571 * 269.99832 * 3 2 1 5 5 H 1.48506 * 109.47179 * 29.99985 * 3 2 1 6 6 H 1.48504 * 109.47122 * 150.00051 * 3 2 1 7 7 C 1.39903 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99920 * 175.69411 * 7 2 1 9 9 C 1.41156 * 119.99796 * 355.69194 * 7 2 1 10 10 C 1.40872 * 120.16176 * 214.72664 * 9 7 2 11 11 C 1.36371 * 119.82797 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.17018 * 0.02562 * 11 10 9 13 13 N 1.39233 * 119.83332 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99623 * 144.72036 * 13 12 11 15 15 O 1.21276 * 120.00243 * 4.03846 * 14 13 12 16 16 C 1.50702 * 119.99883 * 184.03561 * 14 13 12 17 17 H 1.08999 * 109.25538 * 300.00685 * 16 14 13 18 18 C 1.52722 * 109.25680 * 180.52566 * 16 14 13 19 19 C 1.53314 * 108.45068 * 188.38704 * 18 16 14 20 20 C 1.52770 * 108.32324 * 69.88884 * 19 18 16 21 21 C 1.50486 * 110.56288 * 309.13429 * 20 19 18 22 22 C 1.39179 * 117.97587 * 197.27594 * 21 20 19 23 23 C 1.38416 * 118.86960 * 180.55847 * 22 21 20 24 24 C 1.38238 * 118.83548 * 359.97438 * 23 22 21 25 25 N 1.31506 * 120.61597 * 359.85885 * 24 23 22 26 26 C 1.32699 * 122.40273 * 0.04192 * 25 24 23 27 27 C 1.39480 * 120.33029 * 0.25036 * 12 11 10 28 28 C 1.36376 * 120.17153 * 359.44741 * 27 12 11 29 29 H 0.97004 * 120.00186 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.08591 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.91359 * 180.02562 * 11 10 9 32 32 H 0.96993 * 120.00634 * 324.44858 * 13 12 11 33 33 H 1.08989 * 109.64464 * 308.11346 * 18 16 14 34 34 H 1.08996 * 109.63774 * 68.74446 * 18 16 14 35 35 H 1.08994 * 109.71218 * 310.18157 * 19 18 16 36 36 H 1.08994 * 109.72538 * 189.60844 * 19 18 16 37 37 H 1.09003 * 109.25690 * 188.85191 * 20 19 18 38 38 H 1.08998 * 109.25670 * 69.41074 * 20 19 18 39 39 H 1.07998 * 120.56739 * 0.53710 * 22 21 20 40 40 H 1.07994 * 120.58050 * 179.97438 * 23 22 21 41 41 H 1.08006 * 119.68617 * 179.87885 * 24 23 22 42 42 H 1.08000 * 119.91456 * 179.72727 * 27 12 11 43 43 H 1.07994 * 120.08646 * 180.24975 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4401 2.6527 0.7001 6 1 3.5403 1.4401 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0859 -1.2130 -0.0697 9 6 1.3054 -2.4323 0.0929 10 6 1.8638 -3.5192 0.7937 11 6 1.1791 -4.6956 0.8783 12 6 -0.0708 -4.8242 0.2726 13 7 -0.7635 -6.0286 0.3629 14 6 -2.1077 -6.0271 0.4609 15 8 -2.7192 -4.9817 0.3968 16 6 -2.8509 -7.3244 0.6500 17 1 -2.6466 -7.9821 -0.1948 18 6 -4.3501 -7.0409 0.7167 19 6 -5.0710 -8.3332 1.1177 20 6 -4.7364 -8.6368 2.5770 21 6 -3.2485 -8.5937 2.7982 22 6 -2.7418 -9.1924 3.9480 23 6 -1.3770 -9.1534 4.1758 24 6 -0.5648 -8.5215 3.2528 25 7 -1.0787 -7.9693 2.1756 26 6 -2.3807 -7.9867 1.9196 27 6 -0.6275 -3.7543 -0.4279 28 6 0.0425 -2.5697 -0.5158 29 1 -0.4850 0.8401 0.0004 30 1 2.8316 -3.4212 1.2629 31 1 1.6057 -5.5297 1.4156 32 1 -0.2791 -6.8688 0.3512 33 1 -4.5441 -6.2671 1.4593 34 1 -4.7046 -6.7125 -0.2603 35 1 -4.7331 -9.1541 0.4852 36 1 -6.1475 -8.2035 1.0070 37 1 -5.1094 -9.6287 2.8326 38 1 -5.2166 -7.8969 3.2173 39 1 -3.4021 -9.6788 4.6506 40 1 -0.9542 -9.6087 5.0591 41 1 0.5018 -8.4812 3.4178 42 1 -1.5938 -3.8627 -0.8980 43 1 -0.3917 -1.7409 -1.0551 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193883602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:11 Heat of formation + Delta-G solvation = -5.093510 kcal Electronic energy + Delta-G solvation = -26311.009798 eV Core-core repulsion = 22705.296164 eV Total energy + Delta-G solvation = -3605.713634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06701 -40.73818 -39.11355 -37.34536 -36.08814 -34.84543 -34.14108 -31.52708 -31.41965 -31.16266 -30.42178 -27.04038 -25.50669 -24.21878 -24.13901 -23.19621 -22.54459 -21.19716 -20.63290 -19.22644 -18.55066 -17.91054 -17.59330 -17.34139 -16.96297 -16.56298 -15.85630 -15.68887 -15.36248 -15.04510 -15.02657 -14.69169 -14.45942 -14.42957 -13.99269 -13.78763 -13.76935 -13.53961 -13.37348 -13.23508 -12.89273 -12.83591 -12.65580 -12.30979 -12.09193 -11.87318 -11.72241 -11.69296 -11.50465 -11.21217 -10.82226 -10.59290 -10.41121 -10.30595 -9.68712 -9.44839 -8.71245 -8.48941 -6.32037 0.13293 0.35661 0.81624 1.12755 1.38015 1.44192 1.53436 1.79322 2.23551 2.41194 2.83137 2.84958 3.18289 3.49637 3.69674 3.80924 3.87238 3.89417 4.11552 4.16775 4.26825 4.36819 4.41286 4.44558 4.49444 4.55875 4.68565 4.84284 4.90066 4.97824 5.00257 5.11065 5.14017 5.18179 5.20985 5.28041 5.35950 5.38795 5.40788 5.47248 5.71447 5.79611 5.90167 6.09511 6.16209 6.35776 6.70481 6.79857 6.96416 7.01438 7.04170 7.47009 8.44210 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.003008 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.353587 B = 9305.793493 C =10032.998449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.021 3.979 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.497 4.497 8 H 0.079 0.921 9 C 0.065 3.935 10 C -0.209 4.209 11 C -0.108 4.108 12 C 0.023 3.977 13 N -0.626 5.626 14 C 0.506 3.494 15 O -0.579 6.579 16 C -0.044 4.044 17 H 0.130 0.870 18 C -0.100 4.100 19 C -0.111 4.111 20 C -0.078 4.078 21 C -0.124 4.124 22 C -0.080 4.080 23 C -0.166 4.166 24 C 0.086 3.914 25 N -0.512 5.512 26 C 0.109 3.891 27 C -0.111 4.111 28 C -0.166 4.166 29 H 0.282 0.718 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.418 0.582 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.096 0.904 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.716 -21.890 7.182 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.190 4.190 3 Si 0.813 3.187 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.528 4.528 8 H 0.098 0.902 9 C 0.063 3.937 10 C -0.229 4.229 11 C -0.128 4.128 12 C -0.071 4.071 13 N -0.271 5.271 14 C 0.293 3.707 15 O -0.459 6.459 16 C -0.066 4.066 17 H 0.147 0.853 18 C -0.138 4.138 19 C -0.148 4.148 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.105 4.105 23 C -0.185 4.185 24 C -0.073 4.073 25 N -0.221 5.221 26 C -0.026 4.026 27 C -0.131 4.131 28 C -0.187 4.187 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.146 0.854 32 H 0.257 0.743 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.184 0.816 40 H 0.183 0.817 41 H 0.189 0.811 42 H 0.114 0.886 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.794 -20.642 6.554 23.017 hybrid contribution 0.166 0.510 0.477 0.718 sum -7.627 -20.132 7.032 22.648 Atomic orbital electron populations 1.69922 1.08975 1.29767 1.38979 1.26871 0.95702 1.04774 0.91632 0.85053 0.78747 0.75503 0.79406 1.18595 1.19727 1.17913 1.19753 0.94955 0.91123 1.46984 0.90236 1.18040 0.92640 0.93230 0.89776 1.20943 1.01808 0.94678 1.05435 1.20393 0.94536 0.97880 0.99952 1.17466 0.95144 0.88074 1.06411 1.42995 1.06270 1.07670 1.70119 1.21064 0.82612 0.91275 0.75701 1.90680 1.68371 1.35095 1.51772 1.20183 0.96775 0.92705 0.96896 0.85259 1.21409 0.90422 0.99109 1.02889 1.21586 1.01415 0.95941 0.95895 1.20549 0.89086 1.04114 0.97755 1.20708 0.98106 0.98578 0.95153 1.22002 0.96167 0.96490 0.95884 1.22488 0.94480 1.00231 1.01330 1.23074 1.01723 0.93110 0.89411 1.67280 1.14407 1.17742 1.22671 1.20578 0.89404 0.96868 0.95713 1.20662 0.98788 0.94012 0.99641 1.21166 0.97980 0.96124 1.03382 0.90789 0.87013 0.85418 0.74323 0.92948 0.90560 0.90121 0.88704 0.87494 0.90116 0.81576 0.81651 0.81133 0.88551 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.80 10.60 21.82 0.23 -48.57 16 2 C 0.02 1.15 5.42 85.24 0.46 1.61 16 3 Si 0.99 40.98 29.56 68.60 2.03 43.01 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.50 -28.28 9.03 23.39 0.21 -28.07 16 8 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 9 C 0.07 3.78 5.55 -21.27 -0.12 3.66 16 10 C -0.21 -10.62 9.74 22.48 0.22 -10.40 16 11 C -0.11 -4.94 9.90 22.13 0.22 -4.72 16 12 C 0.02 1.09 6.30 38.57 0.24 1.34 16 13 N -0.63 -24.45 4.59 -303.12 -1.39 -25.84 16 14 C 0.51 19.63 6.88 87.66 0.60 20.23 16 15 O -0.58 -27.96 13.27 -3.02 -0.04 -28.00 16 16 C -0.04 -1.18 2.70 -12.37 -0.03 -1.22 16 17 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 18 C -0.10 -2.36 4.65 30.61 0.14 -2.22 16 19 C -0.11 -1.58 5.99 30.62 0.18 -1.40 16 20 C -0.08 -1.04 5.68 29.70 0.17 -0.87 16 21 C -0.12 -2.35 5.74 -19.85 -0.11 -2.46 16 22 C -0.08 -1.17 9.75 22.54 0.22 -0.95 16 23 C -0.17 -2.50 10.12 22.31 0.23 -2.27 16 24 C 0.09 1.76 11.19 84.74 0.95 2.71 16 25 N -0.51 -13.53 7.67 -184.00 -1.41 -14.95 16 26 C 0.11 2.75 6.20 42.29 0.26 3.01 16 27 C -0.11 -6.07 8.61 22.13 0.19 -5.88 16 28 C -0.17 -9.83 8.61 22.48 0.19 -9.63 16 29 H 0.28 14.84 8.30 -92.71 -0.77 14.07 16 30 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 31 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.42 13.80 7.40 -92.71 -0.69 13.11 16 33 H 0.05 1.51 7.78 -2.39 -0.02 1.49 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 36 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 37 H 0.11 0.82 8.13 -2.39 -0.02 0.80 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 42 H 0.10 5.36 6.25 -2.91 -0.02 5.35 16 43 H 0.11 6.63 6.13 -2.91 -0.02 6.61 16 Total: -1.00 -76.34 351.86 4.00 -72.34 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: 0.35 Total: 39.53 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 4.23 Total: -37.53 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -2.57 Total: -89.36 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.04 Total: -28.00 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -76.34 4.00 -72.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193883602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.250 kcal (2) G-P(sol) polarization free energy of solvation -76.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds