Wall clock time and date at job start Tue Mar 31 2020 13:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86794 * 119.99734 * 2 1 4 4 H 1.48497 * 109.47140 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47350 * 299.99883 * 3 2 1 6 6 H 1.48496 * 109.47340 * 59.99944 * 3 2 1 7 7 C 1.39905 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99512 * 196.83473 * 7 2 1 9 9 C 1.41146 * 120.00044 * 16.83702 * 7 2 1 10 10 C 1.40880 * 120.16151 * 205.34199 * 9 7 2 11 11 C 1.36368 * 119.82685 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.17134 * 359.97438 * 11 10 9 13 13 N 1.39234 * 119.83529 * 180.02562 * 12 11 10 14 14 C 1.34776 * 120.00095 * 145.63127 * 13 12 11 15 15 O 1.21282 * 120.00227 * 354.87196 * 14 13 12 16 16 C 1.50699 * 120.00029 * 174.87442 * 14 13 12 17 17 H 1.09001 * 109.25712 * 59.47159 * 16 14 13 18 18 C 1.52721 * 109.22764 * 178.93389 * 16 14 13 19 19 C 1.53321 * 108.44518 * 171.57130 * 18 16 14 20 20 C 1.52767 * 108.36479 * 290.17003 * 19 18 16 21 21 C 1.50492 * 110.55750 * 50.85411 * 20 19 18 22 22 C 1.39193 * 117.97856 * 162.40823 * 21 20 19 23 23 C 1.38400 * 118.86791 * 179.76131 * 22 21 20 24 24 C 1.38239 * 118.84569 * 359.95562 * 23 22 21 25 25 N 1.31516 * 120.60828 * 0.13045 * 24 23 22 26 26 C 1.32691 * 122.39844 * 0.03725 * 25 24 23 27 27 C 1.39487 * 120.33325 * 0.29517 * 12 11 10 28 28 C 1.36374 * 120.16446 * 359.44858 * 27 12 11 29 29 H 0.97002 * 120.00557 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.08412 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.91480 * 180.02562 * 11 10 9 32 32 H 0.97007 * 120.00262 * 325.62875 * 13 12 11 33 33 H 1.08998 * 109.63974 * 51.88511 * 18 16 14 34 34 H 1.08999 * 109.64176 * 291.25729 * 18 16 14 35 35 H 1.09005 * 109.68447 * 170.45441 * 19 18 16 36 36 H 1.08996 * 109.68693 * 49.89274 * 19 18 16 37 37 H 1.08997 * 109.26307 * 171.13601 * 20 19 18 38 38 H 1.09003 * 109.25899 * 290.61484 * 20 19 18 39 39 H 1.07998 * 120.56350 * 359.74184 * 22 21 20 40 40 H 1.08005 * 120.57800 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.69820 * 180.10241 * 24 23 22 42 42 H 1.07995 * 119.91547 * 179.72463 * 27 12 11 43 43 H 1.08005 * 120.08612 * 180.29400 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7026 1.3465 -0.0006 5 1 1.8839 2.3965 -1.2125 6 1 1.8839 2.3964 1.2124 7 6 2.0083 -1.2116 0.0005 8 1 3.0536 -1.2315 0.2714 9 6 1.3479 -2.4079 -0.3530 10 6 1.8189 -3.6453 0.1285 11 6 1.1759 -4.7970 -0.2178 12 6 0.0545 -4.7520 -1.0459 13 7 -0.5969 -5.9321 -1.3947 14 6 -1.9350 -5.9411 -1.5554 15 8 -2.5824 -4.9462 -1.3063 16 6 -2.6268 -7.1873 -2.0445 17 1 -2.4299 -8.0040 -1.3500 18 6 -4.1315 -6.9343 -2.1108 19 6 -4.7943 -8.1294 -2.8058 20 6 -4.3990 -8.1081 -4.2812 21 6 -2.9064 -7.9818 -4.4267 22 6 -2.3392 -8.3166 -5.6529 23 6 -0.9687 -8.2025 -5.8085 24 6 -0.2108 -7.7590 -4.7408 25 7 -0.7813 -7.4532 -3.5959 26 6 -2.0907 -7.5520 -3.4053 27 6 -0.4144 -3.5312 -1.5311 28 6 0.2149 -2.3706 -1.1892 29 1 -0.4851 0.8400 0.0004 30 1 2.6868 -3.6817 0.7701 31 1 1.5355 -5.7463 0.1508 32 1 -0.0877 -6.7479 -1.5220 33 1 -4.3254 -6.0255 -2.6804 34 1 -4.5302 -6.8299 -1.1017 35 1 -5.8778 -8.0524 -2.7148 36 1 -4.4518 -9.0570 -2.3472 37 1 -4.7295 -9.0322 -4.7555 38 1 -4.8802 -7.2611 -4.7702 39 1 -2.9579 -8.6598 -6.4688 40 1 -0.4995 -8.4552 -6.7479 41 1 0.8596 -7.6633 -4.8475 42 1 -1.2807 -3.5046 -2.1754 43 1 -0.1521 -1.4256 -1.5618 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193883614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:15 Heat of formation + Delta-G solvation = 11.263016 kcal Electronic energy + Delta-G solvation = -26312.305481 eV Core-core repulsion = 22707.301119 eV Total energy + Delta-G solvation = -3605.004362 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.04684 -39.23943 -37.34916 -36.33342 -34.28400 -33.57748 -32.66259 -30.61099 -30.18626 -29.37902 -28.73163 -25.39362 -24.36783 -23.38170 -23.07363 -21.33071 -20.87778 -19.96567 -19.28438 -17.26717 -17.12739 -16.71479 -16.49510 -16.05971 -15.68319 -15.11187 -14.58144 -14.40382 -14.02426 -13.87927 -13.72045 -13.47056 -13.08641 -13.06483 -12.74954 -12.49607 -12.46775 -12.04978 -11.94252 -11.72555 -11.37407 -11.25806 -11.08005 -11.02990 -10.84232 -10.71637 -10.43097 -9.90416 -9.82027 -9.72982 -9.49307 -9.34219 -9.13149 -8.78636 -8.50790 -7.42315 -6.86749 -6.64316 -4.19940 0.94974 1.12019 2.66493 3.05045 3.12271 3.17902 3.19187 3.47176 3.61345 3.95663 4.00132 4.10686 4.39344 4.56959 4.65681 4.74080 4.77968 4.83766 4.96583 5.06518 5.26917 5.30869 5.39664 5.49282 5.58141 5.62233 5.70958 5.79442 5.84458 5.97040 6.04642 6.14125 6.26124 6.27778 6.48119 6.55081 6.95551 7.10489 7.16391 7.27144 7.41314 7.69512 7.81746 7.87614 8.09784 8.14339 8.33186 8.49882 8.72268 8.95965 8.97546 9.14645 10.27906 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.002996 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.258263 B = 9342.447906 C = 9749.749923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.214 4.214 11 C -0.107 4.107 12 C 0.005 3.995 13 N -0.632 5.632 14 C 0.509 3.491 15 O -0.533 6.533 16 C -0.056 4.056 17 H 0.109 0.891 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.078 4.078 21 C -0.121 4.121 22 C -0.079 4.079 23 C -0.175 4.175 24 C 0.108 3.892 25 N -0.478 5.478 26 C 0.141 3.859 27 C -0.087 4.087 28 C -0.154 4.154 29 H 0.279 0.721 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.402 0.598 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.158 0.842 42 H 0.097 0.903 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 -17.403 -10.290 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.102 3.898 10 C -0.234 4.234 11 C -0.127 4.127 12 C -0.087 4.087 13 N -0.274 5.274 14 C 0.294 3.706 15 O -0.411 6.411 16 C -0.078 4.078 17 H 0.127 0.873 18 C -0.139 4.139 19 C -0.158 4.158 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.105 4.105 23 C -0.195 4.195 24 C -0.052 4.052 25 N -0.187 5.187 26 C 0.006 3.994 27 C -0.107 4.107 28 C -0.174 4.174 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.238 0.762 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.175 0.825 42 H 0.115 0.885 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.785 -16.254 -9.422 19.975 hybrid contribution 0.220 0.043 -0.858 0.887 sum -6.565 -16.211 -10.280 20.287 Atomic orbital electron populations 1.69876 1.07499 1.29006 1.35282 1.25922 0.94716 1.01261 0.92486 0.86290 0.80929 0.81157 0.78482 1.18458 1.19793 1.20066 1.19546 0.97708 0.91187 1.40624 0.90469 1.17643 0.91269 0.92058 0.88871 1.20541 1.03726 0.92573 1.06600 1.20040 0.96961 0.97131 0.98547 1.17207 0.99019 0.85290 1.07208 1.42981 1.06242 1.11690 1.66531 1.20007 0.82759 0.88890 0.78916 1.90714 1.64970 1.34824 1.50551 1.20212 0.96636 0.98070 0.92881 0.87338 1.21409 0.91183 0.98769 1.02504 1.21607 1.00828 0.98813 0.94547 1.20453 0.90536 1.02561 0.97980 1.20410 0.97171 1.00726 0.93995 1.21560 0.95185 0.97142 0.96592 1.22116 0.94703 1.01998 1.00694 1.22692 1.00557 0.93816 0.88091 1.67440 1.11823 1.14039 1.25368 1.20623 0.89022 0.95172 0.94629 1.20390 0.98895 0.91788 0.99582 1.20972 0.98964 0.96608 1.00860 0.90972 0.88751 0.89297 0.76235 0.90221 0.90087 0.90667 0.91477 0.90575 0.90173 0.84952 0.84792 0.82508 0.88462 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.52 10.94 55.55 0.61 -20.91 16 2 C 0.07 1.92 5.15 -17.33 -0.09 1.83 16 3 Si 0.91 19.25 29.59 -169.99 -5.03 14.22 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.46 -12.61 9.04 -37.85 -0.34 -12.95 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 9 C 0.10 2.89 5.57 -106.80 -0.59 2.30 16 10 C -0.21 -5.41 9.74 -39.26 -0.38 -5.79 16 11 C -0.11 -2.47 9.89 -39.79 -0.39 -2.87 16 12 C 0.01 0.13 6.27 -83.57 -0.52 -0.40 16 13 N -0.63 -12.37 4.58 -9.74 -0.04 -12.42 16 14 C 0.51 9.75 6.76 -10.99 -0.07 9.68 16 15 O -0.53 -12.41 13.56 5.56 0.08 -12.34 16 16 C -0.06 -0.77 2.70 -93.05 -0.25 -1.02 16 17 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.10 -1.22 4.65 -26.71 -0.12 -1.34 16 19 C -0.12 -1.02 5.98 -26.68 -0.16 -1.18 16 20 C -0.08 -0.65 5.69 -28.10 -0.16 -0.81 16 21 C -0.12 -1.32 5.74 -104.60 -0.60 -1.92 16 22 C -0.08 -0.73 9.75 -39.17 -0.38 -1.11 16 23 C -0.18 -1.63 10.12 -39.52 -0.40 -2.03 16 24 C 0.11 1.23 11.19 -17.69 -0.20 1.03 16 25 N -0.48 -6.70 7.74 -9.51 -0.07 -6.77 16 26 C 0.14 1.88 6.19 -82.44 -0.51 1.37 16 27 C -0.09 -2.27 8.57 -39.79 -0.34 -2.62 16 28 C -0.15 -4.30 8.63 -39.26 -0.34 -4.64 16 29 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 30 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.40 6.82 7.48 -40.82 -0.31 6.51 16 33 H 0.08 1.12 7.77 -51.93 -0.40 0.71 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.08 0.48 8.13 -51.93 -0.42 0.06 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.10 2.59 6.48 -52.49 -0.34 2.25 16 43 H 0.12 3.42 6.17 -52.48 -0.32 3.09 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -32.76 352.55 -10.59 -43.35 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.57 Total: 12.02 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -5.87 Total: -22.47 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.49 Total: -40.10 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.76 -10.59 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193883614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.614 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds