Wall clock time and date at job start Tue Mar 31 2020 13:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86794 * 119.99734 * 2 1 4 4 H 1.48497 * 109.47140 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47350 * 299.99883 * 3 2 1 6 6 H 1.48496 * 109.47340 * 59.99944 * 3 2 1 7 7 C 1.39905 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99512 * 196.83473 * 7 2 1 9 9 C 1.41146 * 120.00044 * 16.83702 * 7 2 1 10 10 C 1.40880 * 120.16151 * 205.34199 * 9 7 2 11 11 C 1.36368 * 119.82685 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.17134 * 359.97438 * 11 10 9 13 13 N 1.39234 * 119.83529 * 180.02562 * 12 11 10 14 14 C 1.34776 * 120.00095 * 145.63127 * 13 12 11 15 15 O 1.21282 * 120.00227 * 354.87196 * 14 13 12 16 16 C 1.50699 * 120.00029 * 174.87442 * 14 13 12 17 17 H 1.09001 * 109.25712 * 59.47159 * 16 14 13 18 18 C 1.52721 * 109.22764 * 178.93389 * 16 14 13 19 19 C 1.53321 * 108.44518 * 171.57130 * 18 16 14 20 20 C 1.52767 * 108.36479 * 290.17003 * 19 18 16 21 21 C 1.50492 * 110.55750 * 50.85411 * 20 19 18 22 22 C 1.39193 * 117.97856 * 162.40823 * 21 20 19 23 23 C 1.38400 * 118.86791 * 179.76131 * 22 21 20 24 24 C 1.38239 * 118.84569 * 359.95562 * 23 22 21 25 25 N 1.31516 * 120.60828 * 0.13045 * 24 23 22 26 26 C 1.32691 * 122.39844 * 0.03725 * 25 24 23 27 27 C 1.39487 * 120.33325 * 0.29517 * 12 11 10 28 28 C 1.36374 * 120.16446 * 359.44858 * 27 12 11 29 29 H 0.97002 * 120.00557 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.08412 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.91480 * 180.02562 * 11 10 9 32 32 H 0.97007 * 120.00262 * 325.62875 * 13 12 11 33 33 H 1.08998 * 109.63974 * 51.88511 * 18 16 14 34 34 H 1.08999 * 109.64176 * 291.25729 * 18 16 14 35 35 H 1.09005 * 109.68447 * 170.45441 * 19 18 16 36 36 H 1.08996 * 109.68693 * 49.89274 * 19 18 16 37 37 H 1.08997 * 109.26307 * 171.13601 * 20 19 18 38 38 H 1.09003 * 109.25899 * 290.61484 * 20 19 18 39 39 H 1.07998 * 120.56350 * 359.74184 * 22 21 20 40 40 H 1.08005 * 120.57800 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.69820 * 180.10241 * 24 23 22 42 42 H 1.07995 * 119.91547 * 179.72463 * 27 12 11 43 43 H 1.08005 * 120.08612 * 180.29400 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7026 1.3465 -0.0006 5 1 1.8839 2.3965 -1.2125 6 1 1.8839 2.3964 1.2124 7 6 2.0083 -1.2116 0.0005 8 1 3.0536 -1.2315 0.2714 9 6 1.3479 -2.4079 -0.3530 10 6 1.8189 -3.6453 0.1285 11 6 1.1759 -4.7970 -0.2178 12 6 0.0545 -4.7520 -1.0459 13 7 -0.5969 -5.9321 -1.3947 14 6 -1.9350 -5.9411 -1.5554 15 8 -2.5824 -4.9462 -1.3063 16 6 -2.6268 -7.1873 -2.0445 17 1 -2.4299 -8.0040 -1.3500 18 6 -4.1315 -6.9343 -2.1108 19 6 -4.7943 -8.1294 -2.8058 20 6 -4.3990 -8.1081 -4.2812 21 6 -2.9064 -7.9818 -4.4267 22 6 -2.3392 -8.3166 -5.6529 23 6 -0.9687 -8.2025 -5.8085 24 6 -0.2108 -7.7590 -4.7408 25 7 -0.7813 -7.4532 -3.5959 26 6 -2.0907 -7.5520 -3.4053 27 6 -0.4144 -3.5312 -1.5311 28 6 0.2149 -2.3706 -1.1892 29 1 -0.4851 0.8400 0.0004 30 1 2.6868 -3.6817 0.7701 31 1 1.5355 -5.7463 0.1508 32 1 -0.0877 -6.7479 -1.5220 33 1 -4.3254 -6.0255 -2.6804 34 1 -4.5302 -6.8299 -1.1017 35 1 -5.8778 -8.0524 -2.7148 36 1 -4.4518 -9.0570 -2.3472 37 1 -4.7295 -9.0322 -4.7555 38 1 -4.8802 -7.2611 -4.7702 39 1 -2.9579 -8.6598 -6.4688 40 1 -0.4995 -8.4552 -6.7479 41 1 0.8596 -7.6633 -4.8475 42 1 -1.2807 -3.5046 -2.1754 43 1 -0.1521 -1.4256 -1.5618 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193883614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:14 Heat of formation + Delta-G solvation = -7.132280 kcal Electronic energy + Delta-G solvation = -26313.103161 eV Core-core repulsion = 22707.301119 eV Total energy + Delta-G solvation = -3605.802042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06177 -40.72382 -39.11887 -37.34596 -36.12106 -34.86819 -34.15702 -31.53176 -31.43514 -31.17649 -30.45739 -27.05227 -25.51120 -24.21913 -24.15007 -23.22296 -22.57991 -21.18590 -20.60238 -19.26240 -18.54492 -17.87895 -17.60131 -17.39038 -17.02655 -16.53818 -15.87954 -15.71000 -15.36513 -15.12922 -14.85867 -14.68759 -14.56617 -14.40837 -13.97351 -13.84893 -13.73364 -13.62365 -13.33313 -13.30567 -12.91609 -12.80130 -12.65610 -12.32475 -12.09424 -11.86301 -11.73593 -11.66278 -11.49967 -11.22884 -10.90510 -10.56366 -10.48578 -10.27741 -9.69442 -9.46914 -8.83786 -8.60243 -6.26631 0.12510 0.35195 0.80394 1.12152 1.37063 1.42441 1.54090 1.83093 2.20763 2.41763 2.75046 2.85636 3.18698 3.50112 3.73207 3.81193 3.86844 3.89012 4.10840 4.16524 4.27288 4.35577 4.41404 4.41977 4.45426 4.55503 4.67962 4.84102 4.89717 4.96182 4.97611 5.09295 5.11912 5.17885 5.21220 5.27410 5.30891 5.38375 5.40602 5.47163 5.66650 5.78949 5.87992 6.08132 6.12043 6.33135 6.66538 6.81093 6.92247 7.00211 7.03286 7.48648 8.34489 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.002996 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.258263 B = 9342.447906 C = 9749.749923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.028 3.972 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.494 4.494 8 H 0.083 0.917 9 C 0.073 3.927 10 C -0.220 4.220 11 C -0.102 4.102 12 C 0.014 3.986 13 N -0.625 5.625 14 C 0.505 3.495 15 O -0.581 6.581 16 C -0.044 4.044 17 H 0.130 0.870 18 C -0.100 4.100 19 C -0.111 4.111 20 C -0.077 4.077 21 C -0.123 4.123 22 C -0.079 4.079 23 C -0.166 4.166 24 C 0.085 3.915 25 N -0.512 5.512 26 C 0.109 3.891 27 C -0.100 4.100 28 C -0.178 4.178 29 H 0.286 0.714 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.417 0.583 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.082 0.918 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.605 -19.781 -11.560 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.176 1.176 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.524 4.524 8 H 0.101 0.899 9 C 0.071 3.929 10 C -0.240 4.240 11 C -0.122 4.122 12 C -0.080 4.080 13 N -0.269 5.269 14 C 0.292 3.708 15 O -0.461 6.461 16 C -0.066 4.066 17 H 0.147 0.853 18 C -0.138 4.138 19 C -0.148 4.148 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.105 4.105 23 C -0.185 4.185 24 C -0.074 4.074 25 N -0.221 5.221 26 C -0.026 4.026 27 C -0.120 4.120 28 C -0.198 4.198 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.148 0.852 32 H 0.255 0.745 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.185 0.815 40 H 0.184 0.816 41 H 0.186 0.814 42 H 0.100 0.900 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.747 -18.691 -10.699 22.569 hybrid contribution 0.164 0.644 -0.532 0.851 sum -6.583 -18.047 -11.232 22.253 Atomic orbital electron populations 1.69960 1.09329 1.30405 1.36050 1.26897 0.95444 1.04974 0.91258 0.85088 0.79526 0.75825 0.78793 1.17572 1.19173 1.19061 1.19836 0.98136 0.92168 1.42217 0.89939 1.17977 0.91705 0.93634 0.89594 1.20826 1.04281 0.92393 1.06514 1.20385 0.96071 0.98311 0.97466 1.17326 0.98882 0.85901 1.05877 1.42972 1.06734 1.10835 1.66373 1.21053 0.82319 0.90174 0.77208 1.90690 1.65903 1.37290 1.52267 1.20184 0.96850 0.95409 0.94117 0.85260 1.21413 0.90479 0.99564 1.02380 1.21589 1.01621 0.97235 0.94378 1.20551 0.88833 1.04125 0.97962 1.20721 0.98314 0.99644 0.93844 1.22004 0.95579 0.96137 0.96787 1.22481 0.94883 1.00034 1.01097 1.23053 1.01554 0.94507 0.88298 1.67301 1.12511 1.15269 1.27041 1.20586 0.89474 0.97619 0.94885 1.20368 0.98669 0.92834 1.00139 1.20856 1.00266 0.96241 1.02413 0.90335 0.87018 0.85222 0.74456 0.92954 0.90606 0.88683 0.90108 0.87440 0.90098 0.81495 0.81641 0.81379 0.89972 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.21 10.94 21.82 0.24 -46.97 16 2 C 0.03 1.51 5.15 85.24 0.44 1.95 16 3 Si 0.99 40.13 29.59 68.60 2.03 42.16 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.49 -27.88 9.04 23.39 0.21 -27.67 16 8 H 0.08 4.39 7.90 -2.91 -0.02 4.37 16 9 C 0.07 4.23 5.57 -21.28 -0.12 4.11 16 10 C -0.22 -11.21 9.74 22.48 0.22 -10.99 16 11 C -0.10 -4.70 9.89 22.13 0.22 -4.48 16 12 C 0.01 0.67 6.27 38.57 0.24 0.91 16 13 N -0.62 -24.71 4.58 -303.11 -1.39 -26.10 16 14 C 0.50 19.86 6.76 87.66 0.59 20.46 16 15 O -0.58 -28.50 13.56 -3.03 -0.04 -28.54 16 16 C -0.04 -1.20 2.70 -12.37 -0.03 -1.24 16 17 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 18 C -0.10 -2.40 4.65 30.61 0.14 -2.26 16 19 C -0.11 -1.60 5.98 30.62 0.18 -1.42 16 20 C -0.08 -1.05 5.69 29.71 0.17 -0.88 16 21 C -0.12 -2.39 5.74 -19.85 -0.11 -2.50 16 22 C -0.08 -1.20 9.75 22.54 0.22 -0.98 16 23 C -0.17 -2.60 10.12 22.31 0.23 -2.37 16 24 C 0.09 1.83 11.19 84.74 0.95 2.78 16 25 N -0.51 -14.02 7.74 -184.00 -1.42 -15.44 16 26 C 0.11 2.81 6.19 42.29 0.26 3.07 16 27 C -0.10 -5.55 8.57 22.14 0.19 -5.36 16 28 C -0.18 -10.53 8.63 22.48 0.19 -10.33 16 29 H 0.29 14.73 8.30 -92.71 -0.77 13.96 16 30 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 31 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 32 H 0.42 13.93 7.48 -92.70 -0.69 13.23 16 33 H 0.05 1.53 7.77 -2.39 -0.02 1.51 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 37 H 0.11 0.84 8.13 -2.39 -0.02 0.82 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.08 4.71 6.48 -2.91 -0.02 4.70 16 43 H 0.10 5.97 6.17 -2.91 -0.02 5.96 16 Total: -1.00 -76.56 352.55 3.95 -72.61 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: 0.35 Total: 39.48 kcal Atomic # 6 Polarization: -41.38 SS G_CDS: 4.19 Total: -37.19 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -2.57 Total: -88.51 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.04 Total: -28.54 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -76.56 3.95 -72.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193883614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.474 kcal (2) G-P(sol) polarization free energy of solvation -76.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds