Wall clock time and date at job start Tue Mar 31 2020 13:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46873 * 300.00143 * 3 2 1 6 6 H 1.48499 * 109.46955 * 60.00189 * 3 2 1 7 7 C 1.37879 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99760 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46896 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99922 * 269.99674 * 10 9 7 12 12 C 1.50699 * 109.46797 * 270.00275 * 11 10 9 13 13 C 1.38673 * 120.41892 * 269.71539 * 12 11 10 14 14 C 1.38632 * 118.42129 * 179.78402 * 13 12 11 15 15 C 1.38226 * 119.16063 * 0.51915 * 14 13 12 16 16 N 1.31854 * 120.76030 * 359.72576 * 15 14 13 17 17 C 1.31880 * 121.72930 * 359.97438 * 16 15 14 18 18 C 1.34780 * 120.00042 * 90.00103 * 10 9 7 19 19 O 1.21698 * 119.99770 * 179.97438 * 18 10 9 20 20 C 1.46423 * 120.00021 * 359.97438 * 18 10 9 21 21 C 1.34805 * 119.99991 * 187.21217 * 20 18 10 22 22 C 1.47209 * 120.00020 * 11.12755 * 21 20 18 23 23 C 1.39832 * 120.17287 * 222.74284 * 22 21 20 24 24 C 1.37889 * 119.83073 * 180.02562 * 23 22 21 25 25 C 1.38405 * 120.16526 * 0.02562 * 24 23 22 26 26 C 1.38394 * 120.34672 * 359.97438 * 25 24 23 27 27 C 1.37886 * 120.17364 * 0.02562 * 26 25 24 28 28 H 0.96999 * 120.00094 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47441 * 59.99913 * 9 7 2 30 30 H 1.09000 * 109.46918 * 300.00147 * 9 7 2 31 31 H 1.08996 * 109.46689 * 29.99878 * 11 10 9 32 32 H 1.08990 * 109.47189 * 150.00248 * 11 10 9 33 33 H 1.08004 * 120.78736 * 0.03031 * 13 12 11 34 34 H 1.07998 * 120.41509 * 180.22278 * 14 13 12 35 35 H 1.07994 * 119.61896 * 179.74418 * 15 14 13 36 36 H 1.08005 * 119.61714 * 180.02562 * 17 16 15 37 37 H 1.08003 * 120.00144 * 7.21322 * 20 18 10 38 38 H 1.08005 * 119.99987 * 191.13238 * 21 20 18 39 39 H 1.08003 * 120.08685 * 0.04140 * 23 22 21 40 40 H 1.07996 * 119.91872 * 180.27694 * 24 23 22 41 41 H 1.08007 * 119.82318 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.91288 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.08942 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6791 -4.1694 -1.2693 12 6 1.7623 -5.2836 -1.7042 13 6 2.0115 -6.5907 -1.3138 14 6 1.1387 -7.5825 -1.7338 15 6 0.0630 -7.2397 -2.5312 16 7 -0.1401 -5.9865 -2.8874 17 6 0.6658 -5.0165 -2.5016 18 6 2.6410 -4.1248 1.1667 19 8 3.4315 -5.0501 1.1666 20 6 2.1657 -3.5681 2.4348 21 6 2.7099 -3.9791 3.5975 22 6 3.9358 -4.7941 3.5890 23 6 4.0540 -5.8947 4.4434 24 6 5.2056 -6.6529 4.4299 25 6 6.2432 -6.3266 3.5739 26 6 6.1338 -5.2388 2.7254 27 6 4.9885 -4.4709 2.7272 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 2.6867 -3.3878 -2.0289 32 1 3.6884 -4.5594 -1.1390 33 1 2.8630 -6.8297 -0.6939 34 1 1.3001 -8.6108 -1.4457 35 1 -0.6192 -8.0070 -2.8661 36 1 0.4669 -4.0017 -2.8131 37 1 1.3790 -2.8281 2.4385 38 1 2.2465 -3.7105 4.5354 39 1 3.2453 -6.1505 5.1119 40 1 5.2966 -7.5059 5.0859 41 1 7.1429 -6.9241 3.5683 42 1 6.9479 -4.9903 2.0606 43 1 4.9048 -3.6221 2.0647 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000206182777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:11 Heat of formation + Delta-G solvation = 55.774250 kcal Electronic energy + Delta-G solvation = -26535.958516 eV Core-core repulsion = 22932.884306 eV Total energy + Delta-G solvation = -3603.074210 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.12692 -39.44566 -38.23196 -35.36213 -33.58924 -32.91288 -32.13845 -31.34778 -30.58206 -29.25834 -27.59480 -26.17477 -23.62183 -23.37676 -22.80840 -22.16704 -21.86125 -20.36937 -17.99106 -17.11197 -16.89184 -16.49614 -16.26527 -15.89907 -15.45142 -15.09153 -14.77189 -14.62917 -14.35182 -13.83610 -13.58155 -13.41126 -13.17360 -12.85387 -12.84211 -12.68808 -12.45858 -12.40328 -11.97801 -11.79800 -11.53178 -11.18467 -11.03976 -10.88327 -10.81296 -10.70725 -10.23365 -9.84466 -9.66484 -9.51761 -9.24500 -9.19832 -8.77554 -8.61756 -8.52614 -7.78742 -7.68600 -6.23971 -4.32027 1.13183 1.30931 1.53217 1.81281 2.27514 3.18262 3.27559 3.30908 3.79407 3.92752 4.20267 4.23900 4.30934 4.67398 5.02590 5.08523 5.09569 5.16073 5.17486 5.22299 5.24516 5.30266 5.37868 5.41450 5.62291 5.75403 5.82497 5.89397 5.98633 6.05392 6.14799 6.24507 6.34262 6.36253 6.52957 6.56164 6.59233 6.68423 6.81546 6.87450 6.93945 7.01404 7.12793 7.33766 7.43973 7.70246 7.97835 8.18830 8.22424 8.73073 8.93670 9.36450 10.82551 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007381 B = 0.005789 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3792.630979 B = 4835.996846 C = 7828.646747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.236 3.764 10 N -0.583 5.583 11 C 0.161 3.839 12 C -0.145 4.145 13 C -0.054 4.054 14 C -0.182 4.182 15 C 0.089 3.911 16 N -0.490 5.490 17 C 0.114 3.886 18 C 0.540 3.460 19 O -0.557 6.557 20 C -0.172 4.172 21 C -0.065 4.065 22 C -0.053 4.053 23 C -0.108 4.108 24 C -0.140 4.140 25 C -0.118 4.118 26 C -0.136 4.136 27 C -0.029 4.029 28 H 0.265 0.735 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.661 -11.579 3.240 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.116 3.884 10 N -0.311 5.311 11 C 0.037 3.963 12 C -0.148 4.148 13 C -0.081 4.081 14 C -0.202 4.202 15 C -0.068 4.068 16 N -0.198 5.198 17 C -0.043 4.043 18 C 0.331 3.669 19 O -0.440 6.440 20 C -0.193 4.193 21 C -0.084 4.084 22 C -0.053 4.053 23 C -0.126 4.126 24 C -0.158 4.158 25 C -0.136 4.136 26 C -0.154 4.154 27 C -0.048 4.048 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.162 0.838 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.158 -11.686 2.662 13.049 hybrid contribution 0.845 0.859 0.455 1.288 sum 6.004 -10.828 3.117 12.767 Atomic orbital electron populations 1.69926 1.05999 1.27316 1.49514 1.24932 0.94825 0.99286 0.94662 0.86473 0.80136 0.83281 0.77800 1.19661 1.20827 1.20807 1.21500 0.93614 0.90295 1.52210 0.91991 1.19521 0.87550 0.82519 0.98801 1.48242 1.45180 1.33910 1.03771 1.20124 0.95879 0.93271 0.87021 1.21426 0.98656 0.95968 0.98743 1.21663 0.98596 0.92156 0.95671 1.22102 0.96978 1.00422 1.00660 1.22687 0.95775 0.93551 0.94778 1.67698 1.28959 1.00809 1.22352 1.22805 0.89646 0.98545 0.93302 1.18410 0.80839 0.82884 0.84807 1.90762 1.35324 1.30417 1.87477 1.23362 1.03313 1.00552 0.92041 1.22256 0.93557 0.95010 0.97615 1.18902 0.93874 0.95909 0.96639 1.21119 0.97475 0.95233 0.98765 1.20837 0.94320 1.00191 1.00454 1.21055 0.98482 0.97363 0.96723 1.20890 0.98086 0.96541 0.99889 1.21117 0.91568 0.98468 0.93598 0.92484 0.94551 0.94249 0.89114 0.89777 0.84459 0.85333 0.83326 0.82546 0.83793 0.85270 0.86671 0.86883 0.87043 0.86839 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.75 13.29 55.43 0.74 -23.01 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -13.27 9.39 -34.44 -0.32 -13.59 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.24 5.30 4.92 -5.19 -0.03 5.27 16 10 N -0.58 -11.45 2.44 -178.08 -0.43 -11.89 16 11 C 0.16 2.78 5.56 -5.19 -0.03 2.76 16 12 C -0.14 -2.38 5.48 -104.48 -0.57 -2.95 16 13 C -0.05 -0.83 9.86 -39.28 -0.39 -1.22 16 14 C -0.18 -2.44 10.11 -39.44 -0.40 -2.84 16 15 C 0.09 1.24 11.18 -17.55 -0.20 1.05 16 16 N -0.49 -8.08 10.36 -13.25 -0.14 -8.22 16 17 C 0.11 1.90 10.86 -17.55 -0.19 1.71 16 18 C 0.54 10.49 6.60 -12.96 -0.09 10.41 16 19 O -0.56 -11.00 11.36 5.19 0.06 -10.94 16 20 C -0.17 -3.12 9.14 -37.51 -0.34 -3.46 16 21 C -0.06 -1.01 9.81 -37.16 -0.36 -1.38 16 22 C -0.05 -0.86 4.57 -105.06 -0.48 -1.34 16 23 C -0.11 -1.53 9.80 -39.11 -0.38 -1.92 16 24 C -0.14 -1.84 10.03 -39.65 -0.40 -2.24 16 25 C -0.12 -1.58 10.04 -39.46 -0.40 -1.97 16 26 C -0.14 -2.02 10.03 -39.65 -0.40 -2.41 16 27 C -0.03 -0.49 6.58 -39.11 -0.26 -0.75 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.04 0.93 6.01 -51.93 -0.31 0.62 16 31 H 0.09 1.53 8.02 -51.93 -0.42 1.11 16 32 H 0.08 1.42 7.37 -51.93 -0.38 1.04 16 33 H 0.14 2.14 7.71 -52.48 -0.40 1.74 16 34 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.16 2.54 8.06 -52.48 -0.42 2.12 16 37 H 0.14 2.70 6.15 -52.48 -0.32 2.37 16 38 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 39 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 42 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 43 H 0.11 2.07 6.94 -52.49 -0.36 1.71 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -28.52 368.58 -10.12 -38.64 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.55 Total: 8.21 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -5.33 Total: -13.28 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.16 Total: -43.12 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.06 Total: -10.94 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.52 -10.12 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000206182777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.416 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds