Wall clock time and date at job start Tue Mar 31 2020 13:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46873 * 300.00143 * 3 2 1 6 6 H 1.48499 * 109.46955 * 60.00189 * 3 2 1 7 7 C 1.37879 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99760 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46896 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99922 * 269.99674 * 10 9 7 12 12 C 1.50699 * 109.46797 * 270.00275 * 11 10 9 13 13 C 1.38673 * 120.41892 * 269.71539 * 12 11 10 14 14 C 1.38632 * 118.42129 * 179.78402 * 13 12 11 15 15 C 1.38226 * 119.16063 * 0.51915 * 14 13 12 16 16 N 1.31854 * 120.76030 * 359.72576 * 15 14 13 17 17 C 1.31880 * 121.72930 * 359.97438 * 16 15 14 18 18 C 1.34780 * 120.00042 * 90.00103 * 10 9 7 19 19 O 1.21698 * 119.99770 * 179.97438 * 18 10 9 20 20 C 1.46423 * 120.00021 * 359.97438 * 18 10 9 21 21 C 1.34805 * 119.99991 * 187.21217 * 20 18 10 22 22 C 1.47209 * 120.00020 * 11.12755 * 21 20 18 23 23 C 1.39832 * 120.17287 * 222.74284 * 22 21 20 24 24 C 1.37889 * 119.83073 * 180.02562 * 23 22 21 25 25 C 1.38405 * 120.16526 * 0.02562 * 24 23 22 26 26 C 1.38394 * 120.34672 * 359.97438 * 25 24 23 27 27 C 1.37886 * 120.17364 * 0.02562 * 26 25 24 28 28 H 0.96999 * 120.00094 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47441 * 59.99913 * 9 7 2 30 30 H 1.09000 * 109.46918 * 300.00147 * 9 7 2 31 31 H 1.08996 * 109.46689 * 29.99878 * 11 10 9 32 32 H 1.08990 * 109.47189 * 150.00248 * 11 10 9 33 33 H 1.08004 * 120.78736 * 0.03031 * 13 12 11 34 34 H 1.07998 * 120.41509 * 180.22278 * 14 13 12 35 35 H 1.07994 * 119.61896 * 179.74418 * 15 14 13 36 36 H 1.08005 * 119.61714 * 180.02562 * 17 16 15 37 37 H 1.08003 * 120.00144 * 7.21322 * 20 18 10 38 38 H 1.08005 * 119.99987 * 191.13238 * 21 20 18 39 39 H 1.08003 * 120.08685 * 0.04140 * 23 22 21 40 40 H 1.07996 * 119.91872 * 180.27694 * 24 23 22 41 41 H 1.08007 * 119.82318 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.91288 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.08942 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6791 -4.1694 -1.2693 12 6 1.7623 -5.2836 -1.7042 13 6 2.0115 -6.5907 -1.3138 14 6 1.1387 -7.5825 -1.7338 15 6 0.0630 -7.2397 -2.5312 16 7 -0.1401 -5.9865 -2.8874 17 6 0.6658 -5.0165 -2.5016 18 6 2.6410 -4.1248 1.1667 19 8 3.4315 -5.0501 1.1666 20 6 2.1657 -3.5681 2.4348 21 6 2.7099 -3.9791 3.5975 22 6 3.9358 -4.7941 3.5890 23 6 4.0540 -5.8947 4.4434 24 6 5.2056 -6.6529 4.4299 25 6 6.2432 -6.3266 3.5739 26 6 6.1338 -5.2388 2.7254 27 6 4.9885 -4.4709 2.7272 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 2.6867 -3.3878 -2.0289 32 1 3.6884 -4.5594 -1.1390 33 1 2.8630 -6.8297 -0.6939 34 1 1.3001 -8.6108 -1.4457 35 1 -0.6192 -8.0070 -2.8661 36 1 0.4669 -4.0017 -2.8131 37 1 1.3790 -2.8281 2.4385 38 1 2.2465 -3.7105 4.5354 39 1 3.2453 -6.1505 5.1119 40 1 5.2966 -7.5059 5.0859 41 1 7.1429 -6.9241 3.5683 42 1 6.9479 -4.9903 2.0606 43 1 4.9048 -3.6221 2.0647 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000206182777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:10 Heat of formation + Delta-G solvation = 43.036084 kcal Electronic energy + Delta-G solvation = -26536.510884 eV Core-core repulsion = 22932.884306 eV Total energy + Delta-G solvation = -3603.626578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44453 -40.72217 -39.47331 -36.89204 -35.07252 -34.49156 -33.54794 -32.59657 -31.69549 -30.46839 -29.35597 -27.59538 -25.18097 -24.64893 -24.29558 -23.31351 -23.05257 -21.66249 -19.43944 -18.60877 -18.47588 -17.91173 -17.55624 -17.14691 -16.87419 -16.43900 -16.33533 -15.82066 -15.75387 -15.13720 -14.83574 -14.70884 -14.42344 -14.22302 -14.18651 -14.05346 -13.88014 -13.60125 -13.57382 -13.22483 -13.03689 -12.77569 -12.67583 -12.45397 -12.13562 -11.91296 -11.89192 -11.69371 -10.97771 -10.76938 -10.64833 -10.52890 -10.46776 -9.98775 -9.72799 -9.32303 -8.94346 -8.20145 -6.34869 -0.12852 0.11873 0.32347 0.68419 1.06167 1.39544 1.43329 1.53211 2.30599 2.44463 2.50863 2.95785 3.08209 3.10215 3.53018 3.76310 3.87274 3.89084 3.99263 4.08581 4.09790 4.15348 4.21576 4.34053 4.45581 4.56641 4.67388 4.68479 4.72429 4.79159 4.84164 4.89974 5.10496 5.15313 5.18438 5.22609 5.32804 5.34921 5.40149 5.65384 5.69496 5.72645 5.76561 5.80635 5.87546 6.05216 6.24038 6.56636 6.82074 6.99756 7.33088 7.44230 8.85246 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007381 B = 0.005789 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3792.630979 B = 4835.996846 C = 7828.646747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.024 3.976 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.255 3.745 10 N -0.589 5.589 11 C 0.164 3.836 12 C -0.154 4.154 13 C -0.062 4.062 14 C -0.170 4.170 15 C 0.089 3.911 16 N -0.511 5.511 17 C 0.099 3.901 18 C 0.538 3.462 19 O -0.562 6.562 20 C -0.212 4.212 21 C -0.033 4.033 22 C -0.081 4.081 23 C -0.108 4.108 24 C -0.139 4.139 25 C -0.115 4.115 26 C -0.148 4.148 27 C -0.050 4.050 28 H 0.267 0.733 29 H 0.019 0.981 30 H 0.026 0.974 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.165 0.835 35 H 0.186 0.814 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.162 0.838 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.123 0.877 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.622 -13.869 4.632 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.177 4.177 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.071 0.929 9 C 0.134 3.866 10 N -0.318 5.318 11 C 0.041 3.959 12 C -0.157 4.157 13 C -0.089 4.089 14 C -0.189 4.189 15 C -0.068 4.068 16 N -0.220 5.220 17 C -0.057 4.057 18 C 0.330 3.670 19 O -0.445 6.445 20 C -0.233 4.233 21 C -0.052 4.052 22 C -0.081 4.081 23 C -0.126 4.126 24 C -0.157 4.157 25 C -0.133 4.133 26 C -0.166 4.166 27 C -0.069 4.069 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.152 0.848 34 H 0.183 0.817 35 H 0.203 0.797 36 H 0.165 0.835 37 H 0.148 0.852 38 H 0.179 0.821 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.160 0.840 42 H 0.141 0.859 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.137 -13.984 4.052 15.799 hybrid contribution 0.632 1.401 0.100 1.540 sum 6.769 -12.583 4.152 14.879 Atomic orbital electron populations 1.70018 1.07201 1.28080 1.50596 1.25608 0.95486 1.02164 0.94427 0.85559 0.78867 0.79720 0.77842 1.19599 1.20455 1.20363 1.21663 0.93202 0.91447 1.51586 0.92944 1.19080 0.87513 0.82857 0.97171 1.48175 1.45077 1.33606 1.04896 1.20120 0.96154 0.93598 0.86063 1.21278 0.98682 0.96243 0.99521 1.21735 0.99121 0.92148 0.95874 1.22461 0.95660 1.01601 0.99174 1.23335 0.96287 0.93236 0.93937 1.67705 1.29231 1.01907 1.23133 1.22706 0.90224 0.98625 0.94157 1.18625 0.80537 0.82783 0.85035 1.90741 1.35505 1.30651 1.87616 1.23208 1.04845 1.02723 0.92505 1.22655 0.92348 0.92260 0.97952 1.19062 0.93766 0.97389 0.97885 1.21446 0.98680 0.94292 0.98180 1.21278 0.93478 1.00620 1.00292 1.21446 0.99695 0.96563 0.95558 1.21113 0.97813 0.97013 1.00671 1.21032 0.93157 0.98583 0.94109 0.92352 0.96250 0.95595 0.89549 0.89716 0.84808 0.81709 0.79675 0.83489 0.85231 0.82113 0.84312 0.83556 0.84036 0.85884 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.46 13.29 21.45 0.28 -50.18 16 2 C 0.02 1.23 5.46 84.66 0.46 1.69 16 3 Si 0.95 41.67 29.54 68.60 2.03 43.70 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.54 -27.79 9.39 25.60 0.24 -27.55 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.25 12.13 4.92 85.63 0.42 12.55 16 10 N -0.59 -24.44 2.44 -835.53 -2.04 -26.48 16 11 C 0.16 5.99 5.56 85.63 0.48 6.47 16 12 C -0.15 -5.22 5.48 -19.77 -0.11 -5.32 16 13 C -0.06 -1.88 9.86 22.47 0.22 -1.66 16 14 C -0.17 -4.16 10.11 22.36 0.23 -3.93 16 15 C 0.09 2.30 11.18 84.69 0.95 3.24 16 16 N -0.51 -16.73 10.36 -195.85 -2.03 -18.76 16 17 C 0.10 3.44 10.86 84.67 0.92 4.36 16 18 C 0.54 21.80 6.60 86.37 0.57 22.37 16 19 O -0.56 -22.71 11.36 -4.34 -0.05 -22.76 16 20 C -0.21 -7.97 9.14 23.61 0.22 -7.75 16 21 C -0.03 -1.01 9.81 23.84 0.23 -0.78 16 22 C -0.08 -2.53 4.57 -20.15 -0.09 -2.62 16 23 C -0.11 -2.77 9.80 22.57 0.22 -2.55 16 24 C -0.14 -3.14 10.03 22.23 0.22 -2.92 16 25 C -0.11 -2.72 10.04 22.35 0.22 -2.50 16 26 C -0.15 -4.24 10.03 22.22 0.22 -4.02 16 27 C -0.05 -1.69 6.58 22.57 0.15 -1.55 16 28 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.02 0.98 8.07 -2.38 -0.02 0.96 16 30 H 0.03 1.31 6.01 -2.39 -0.01 1.29 16 31 H 0.09 3.13 8.02 -2.39 -0.02 3.11 16 32 H 0.08 3.02 7.37 -2.39 -0.02 3.01 16 33 H 0.13 4.12 7.71 -2.91 -0.02 4.10 16 34 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.15 5.18 8.06 -2.91 -0.02 5.16 16 37 H 0.13 5.17 6.15 -2.91 -0.02 5.15 16 38 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 42 H 0.12 3.15 8.06 -2.91 -0.02 3.12 16 43 H 0.09 3.33 6.94 -2.91 -0.02 3.31 16 Total: -1.00 -62.89 368.58 4.98 -57.91 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 1.01 Total: 29.04 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 5.77 Total: -12.47 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -3.78 Total: -95.41 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -62.89 4.98 -57.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000206182777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.944 kcal (2) G-P(sol) polarization free energy of solvation -62.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds