Wall clock time and date at job start Tue Mar 31 2020 13:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86801 * 119.99730 * 2 1 4 4 H 1.48504 * 109.47024 * 269.99988 * 3 2 1 5 5 H 1.48502 * 109.47411 * 29.99813 * 3 2 1 6 6 H 1.48503 * 109.47350 * 149.99903 * 3 2 1 7 7 C 1.38651 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99828 * 359.97438 * 7 2 1 9 9 O 1.34835 * 120.00084 * 180.02562 * 7 2 1 10 10 C 1.35754 * 116.99654 * 185.05588 * 9 7 2 11 11 C 1.38900 * 120.07105 * 354.48400 * 10 9 7 12 12 C 1.38076 * 119.92595 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.07329 * 359.74516 * 12 11 10 14 14 C 1.38278 * 120.13488 * 0.51129 * 13 12 11 15 15 C 1.50700 * 119.96307 * 179.76976 * 14 13 12 16 16 N 1.46894 * 109.47051 * 269.72172 * 15 14 13 17 17 C 1.46897 * 111.00291 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47243 * 179.97438 * 17 16 15 19 19 C 1.37793 * 120.11213 * 259.72418 * 18 17 16 20 20 C 1.38790 * 120.66940 * 179.76946 * 19 18 17 21 21 C 1.36664 * 120.52653 * 0.51080 * 20 19 18 22 22 C 1.39592 * 119.75803 * 359.74871 * 21 20 19 23 23 C 1.46501 * 134.02831 * 179.97438 * 22 21 20 24 24 C 1.34228 * 106.99859 * 180.02562 * 23 22 21 25 25 N 1.36836 * 109.93964 * 0.02562 * 24 23 22 26 26 H 0.97005 * 125.06583 * 179.97438 * 25 24 23 27 27 C 1.37688 * 109.87662 * 359.97438 * 25 24 23 28 28 C 1.38122 * 120.06941 * 359.49016 * 14 13 12 29 29 H 0.96998 * 119.99950 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.03145 * 359.95490 * 11 10 9 31 31 H 1.08000 * 119.96185 * 180.02562 * 12 11 10 32 32 H 1.07996 * 119.93274 * 180.27988 * 13 12 11 33 33 H 1.08999 * 109.47244 * 149.72133 * 15 14 13 34 34 H 1.09000 * 109.47000 * 29.72212 * 15 14 13 35 35 H 1.00901 * 111.00060 * 303.95784 * 16 15 14 36 36 H 1.09005 * 109.46917 * 60.00054 * 17 16 15 37 37 H 1.08997 * 109.47589 * 300.00160 * 17 16 15 38 38 H 1.08002 * 119.66300 * 0.02562 * 19 18 17 39 39 H 1.07997 * 119.73903 * 180.23875 * 20 19 18 40 40 H 1.07995 * 120.11702 * 179.76914 * 21 20 19 41 41 H 1.07997 * 126.49718 * 0.03062 * 23 22 21 42 42 H 1.08003 * 125.03311 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.03283 * 180.23842 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6528 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0014 9 8 3.3572 -1.2006 0.0011 10 6 3.9736 -2.4055 -0.1050 11 6 3.2235 -3.5745 -0.0925 12 6 3.8534 -4.7984 -0.2011 13 6 5.2294 -4.8609 -0.3276 14 6 5.9793 -3.6992 -0.3351 15 6 7.4787 -3.7721 -0.4680 16 7 8.0850 -3.8569 0.8673 17 6 9.5494 -3.9302 0.7769 18 6 10.1346 -4.0153 2.1631 19 6 10.6601 -2.8910 2.7617 20 6 11.1977 -2.9551 4.0397 21 6 11.2243 -4.1383 4.7230 22 6 10.7021 -5.2908 4.1334 23 6 10.5706 -6.6849 4.5641 24 6 9.9794 -7.3517 3.5603 25 7 9.7220 -6.4990 2.5215 26 1 9.2996 -6.7508 1.6854 27 6 10.1517 -5.2302 2.8399 28 6 5.3552 -2.4718 -0.2268 29 1 -0.4850 0.8400 -0.0004 30 1 2.1488 -3.5261 0.0025 31 1 3.2707 -5.7077 -0.1918 32 1 5.7193 -5.8192 -0.4170 33 1 7.8423 -2.8789 -0.9761 34 1 7.7497 -4.6551 -1.0468 35 1 7.7964 -3.0818 1.4453 36 1 9.9277 -3.0384 0.2773 37 1 9.8344 -4.8145 0.2070 38 1 10.6499 -1.9494 2.2327 39 1 11.6021 -2.0638 4.4961 40 1 11.6476 -4.1815 5.7156 41 1 10.8889 -7.0977 5.5100 42 1 9.7421 -8.4052 3.5709 43 1 5.9412 -1.5647 -0.2366 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237833831.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:02 Heat of formation + Delta-G solvation = 57.115720 kcal Electronic energy + Delta-G solvation = -25095.960095 eV Core-core repulsion = 21492.944055 eV Total energy + Delta-G solvation = -3603.016039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.35070 -39.26768 -37.62538 -36.96371 -35.56998 -32.61380 -32.36870 -30.61916 -29.61169 -29.20074 -28.85939 -26.17435 -25.18272 -23.80487 -22.03667 -21.87212 -21.69508 -20.61719 -20.34542 -18.09253 -17.72085 -17.18617 -16.28471 -15.65099 -15.51611 -15.22874 -15.09120 -14.70536 -14.41197 -14.31483 -14.15370 -13.77824 -13.69500 -13.34542 -13.19102 -12.81601 -12.58696 -12.48517 -12.39454 -12.08349 -11.83779 -11.69001 -11.55673 -11.33293 -10.99457 -10.83451 -10.75982 -10.65984 -10.17254 -9.77014 -9.41211 -8.88814 -8.57339 -8.31006 -8.17012 -7.79899 -7.38904 -6.42400 -4.09547 0.96347 1.56464 1.99554 2.25837 2.59052 3.07611 3.20812 3.24303 3.38930 3.74298 4.22558 4.23974 4.54169 4.61193 4.64425 4.75465 4.86294 4.96513 5.05867 5.11556 5.16885 5.19122 5.36161 5.39215 5.47026 5.51572 5.65582 5.71284 5.72437 5.84329 5.88548 5.93421 6.09930 6.21888 6.38453 6.48000 6.49756 6.59634 6.64110 6.75068 6.90261 7.06650 7.07222 7.20899 7.29116 7.33215 7.42773 7.58556 7.78929 8.02855 8.92936 9.55133 10.65397 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.002571 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.060754 B =10889.371481 C =11702.010463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.159 3.841 11 C -0.217 4.217 12 C -0.079 4.079 13 C -0.181 4.181 14 C -0.049 4.049 15 C 0.105 3.895 16 N -0.680 5.680 17 C 0.099 3.901 18 C -0.092 4.092 19 C -0.096 4.096 20 C -0.147 4.147 21 C -0.073 4.073 22 C -0.115 4.115 23 C -0.211 4.211 24 C 0.051 3.949 25 N -0.586 5.586 26 H 0.418 0.582 27 C 0.122 3.878 28 C -0.184 4.184 29 H 0.279 0.721 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.349 0.651 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.143 0.857 42 H 0.168 0.832 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.536 -11.600 4.595 25.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.124 6.124 10 C 0.107 3.893 11 C -0.237 4.237 12 C -0.097 4.097 13 C -0.201 4.201 14 C -0.050 4.050 15 C -0.023 4.023 16 N -0.312 5.312 17 C -0.030 4.030 18 C -0.094 4.094 19 C -0.116 4.116 20 C -0.166 4.166 21 C -0.091 4.091 22 C -0.120 4.120 23 C -0.236 4.236 24 C -0.076 4.076 25 N -0.188 5.188 26 H 0.255 0.745 27 C 0.014 3.986 28 C -0.204 4.204 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.168 0.832 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.161 0.839 42 H 0.185 0.815 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 22.276 -11.980 4.541 25.697 hybrid contribution -0.040 1.392 -0.553 1.499 sum 22.236 -10.587 3.988 24.949 Atomic orbital electron populations 1.69644 1.05561 1.28475 1.48158 1.24458 0.95018 0.98800 0.95705 0.86185 0.80335 0.81479 0.78913 1.19918 1.20765 1.18399 1.20758 0.76884 0.96620 1.52268 0.87660 1.83571 1.22603 1.25646 1.80578 1.19038 0.91554 0.85561 0.93141 1.21314 1.01163 0.91976 1.09203 1.20796 0.94299 0.96710 0.97873 1.20446 0.93575 0.96716 1.09328 1.19129 0.93474 0.92635 0.99764 1.20810 0.91068 1.00503 0.89898 1.60585 1.05864 1.51313 1.13434 1.20791 0.88251 1.01019 0.92908 1.18765 1.03289 0.90868 0.96526 1.20752 0.98596 0.96860 0.95384 1.20576 1.03078 0.97725 0.95259 1.20248 0.98521 0.91128 0.99243 1.19234 1.04084 0.94298 0.94362 1.21648 1.09540 0.91987 1.00408 1.21820 1.01604 0.96009 0.88137 1.41804 1.53143 1.06576 1.17279 0.74520 1.17934 0.99827 0.85821 0.95062 1.20024 0.92003 0.97126 1.11284 0.91055 0.85014 0.87231 0.87597 0.94530 0.90653 0.83217 0.94076 0.91017 0.85992 0.86146 0.86305 0.83881 0.81480 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.51 13.96 55.48 0.77 -24.74 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.72 28.62 -169.99 -4.86 16.86 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.39 -11.02 9.95 30.88 0.31 -10.71 16 8 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 9 O -0.22 -5.78 8.59 0.02 0.00 -5.78 16 10 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 11 C -0.22 -4.70 9.17 -39.40 -0.36 -5.06 16 12 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 13 C -0.18 -3.00 9.70 -39.54 -0.38 -3.39 16 14 C -0.05 -0.82 5.39 -104.65 -0.56 -1.38 16 15 C 0.11 1.34 5.81 -4.98 -0.03 1.31 16 16 N -0.68 -8.24 6.48 -116.34 -0.75 -9.00 16 17 C 0.10 1.01 5.83 -4.98 -0.03 0.98 16 18 C -0.09 -1.02 5.41 -104.47 -0.56 -1.58 16 19 C -0.10 -1.00 9.64 -39.54 -0.38 -1.38 16 20 C -0.15 -1.48 9.97 -39.95 -0.40 -1.88 16 21 C -0.07 -0.77 10.05 -39.65 -0.40 -1.16 16 22 C -0.12 -1.34 6.37 -105.13 -0.67 -2.01 16 23 C -0.21 -2.05 11.08 -37.67 -0.42 -2.47 16 24 C 0.05 0.43 11.81 -16.73 -0.20 0.24 16 25 N -0.59 -5.64 6.07 -10.65 -0.06 -5.70 16 26 H 0.42 3.36 8.96 -40.82 -0.37 2.99 16 27 C 0.12 1.41 6.98 -83.99 -0.59 0.83 16 28 C -0.18 -3.60 9.65 -39.40 -0.38 -3.98 16 29 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.13 3.00 5.64 -52.49 -0.30 2.70 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 33 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.08 0.85 8.08 -51.93 -0.42 0.44 16 35 H 0.35 4.63 8.72 -39.29 -0.34 4.29 16 36 H 0.04 0.39 7.99 -51.93 -0.42 -0.03 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.12 1.07 8.02 -52.49 -0.42 0.65 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -31.18 367.82 -10.66 -41.84 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.48 Total: 9.37 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -5.81 Total: -28.38 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: -0.04 Total: -39.44 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: 0.00 Total: -5.78 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.86 Total: 16.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.18 -10.66 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237833831.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.951 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds