Wall clock time and date at job start Tue Mar 31 2020 13:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99952 * 2 1 4 4 H 1.48494 * 109.47183 * 269.99645 * 3 2 1 5 5 H 1.48498 * 109.47382 * 30.00174 * 3 2 1 6 6 H 1.48505 * 109.47108 * 150.00206 * 3 2 1 7 7 C 1.37877 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00059 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99722 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47276 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46989 * 55.00096 * 10 9 7 12 12 N 1.46500 * 109.46844 * 295.00226 * 10 9 7 13 13 C 1.34775 * 119.99318 * 154.99890 * 12 10 9 14 14 O 1.21688 * 120.00626 * 359.97438 * 13 12 10 15 15 C 1.46428 * 119.99481 * 179.97438 * 13 12 10 16 16 C 1.34811 * 120.00234 * 173.25860 * 15 13 12 17 17 C 1.47216 * 119.99384 * 348.77569 * 16 15 13 18 18 C 1.40264 * 120.58351 * 132.30660 * 17 16 15 19 19 C 1.38282 * 118.26579 * 179.97438 * 18 17 16 20 20 C 1.38402 * 119.33417 * 359.97438 * 19 18 17 21 21 N 1.31936 * 121.13635 * 0.02562 * 20 19 18 22 22 C 1.31655 * 121.90639 * 359.70263 * 21 20 19 23 23 C 1.50695 * 109.47159 * 175.00079 * 10 9 7 24 24 C 1.38236 * 120.00104 * 79.72755 * 23 10 9 25 25 C 1.38238 * 119.99979 * 179.80965 * 24 23 10 26 26 C 1.38236 * 119.99707 * 0.39654 * 25 24 23 27 27 C 1.38236 * 120.00368 * 359.85859 * 26 25 24 28 28 C 1.38232 * 119.99506 * 359.95478 * 27 26 25 29 29 H 0.97005 * 119.99944 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46798 * 59.99807 * 9 7 2 31 31 H 1.09000 * 109.46985 * 300.00267 * 9 7 2 32 32 H 0.96991 * 119.99967 * 334.99385 * 12 10 9 33 33 H 1.08005 * 120.00431 * 353.26015 * 15 13 12 34 34 H 1.07993 * 120.00487 * 168.77240 * 16 15 13 35 35 H 1.07993 * 120.86738 * 359.97397 * 18 17 16 36 36 H 1.08003 * 120.33190 * 180.02562 * 19 18 17 37 37 H 1.08003 * 119.42609 * 179.97438 * 20 19 18 38 38 H 1.08006 * 119.73950 * 180.29595 * 22 21 20 39 39 H 1.08000 * 119.99771 * 359.97438 * 24 23 10 40 40 H 1.07996 * 119.99790 * 180.22706 * 25 24 23 41 41 H 1.08006 * 119.99228 * 179.83353 * 26 25 24 42 42 H 1.07993 * 119.99808 * 179.97438 * 27 26 25 43 43 H 1.08008 * 119.99409 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9294 -3.5552 0.8413 12 7 3.0063 -3.6539 -1.2523 13 6 4.2310 -4.2145 -1.3000 14 8 4.7048 -4.7271 -0.3032 15 6 4.9914 -4.2068 -2.5513 16 6 6.2666 -4.6437 -2.5678 17 6 6.9753 -4.8940 -1.3020 18 6 7.6913 -6.0845 -1.1082 19 6 8.3396 -6.2696 0.0991 20 6 8.2628 -5.2843 1.0680 21 7 7.5820 -4.1736 0.8591 22 6 6.9518 -3.9465 -0.2742 23 6 1.4959 -4.9636 0.1233 24 6 0.8894 -5.5204 -0.9872 25 6 0.2053 -6.7163 -0.8744 26 6 0.1208 -7.3513 0.3506 27 6 0.7227 -6.7919 1.4622 28 6 1.4100 -5.5979 1.3485 29 1 -0.4850 0.8401 -0.0004 30 1 0.6240 -2.5566 -0.8903 31 1 0.6247 -2.5570 0.8897 32 1 2.6287 -3.2451 -2.0467 33 1 4.5307 -3.8511 -3.4611 34 1 6.7683 -4.8101 -3.5096 35 1 7.7351 -6.8368 -1.8817 36 1 8.9009 -7.1737 0.2838 37 1 8.7683 -5.4275 2.0117 38 1 6.4088 -3.0228 -0.4096 39 1 0.9524 -5.0223 -1.9434 40 1 -0.2653 -7.1531 -1.7428 41 1 -0.4160 -8.2843 0.4391 42 1 0.6562 -7.2878 2.4192 43 1 1.8807 -5.1611 2.2169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255132373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:09 Heat of formation + Delta-G solvation = 23.053113 kcal Electronic energy + Delta-G solvation = -26323.291708 eV Core-core repulsion = 22718.798603 eV Total energy + Delta-G solvation = -3604.493105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37961 -40.63447 -39.62240 -36.90239 -35.13326 -34.70149 -33.04045 -32.63056 -31.72759 -30.80123 -30.38874 -26.95546 -25.29782 -24.32939 -23.82064 -23.47906 -22.96633 -21.27512 -20.47374 -18.69760 -18.41225 -17.78070 -17.71717 -17.13377 -16.93321 -16.49983 -16.21668 -15.81546 -15.43274 -15.31467 -15.01362 -14.61046 -14.45373 -14.30458 -14.20164 -14.05023 -13.92356 -13.68180 -13.64351 -13.40942 -12.94473 -12.65484 -12.58235 -12.47516 -12.16438 -11.89509 -11.60625 -11.35236 -11.20438 -10.91845 -10.59467 -10.55058 -10.22407 -9.85694 -9.76577 -9.54326 -9.25320 -8.21765 -6.31778 -0.24655 0.48109 0.49866 0.53790 0.83462 1.37288 1.39829 1.50155 2.38506 2.43930 2.47132 2.96613 2.99391 3.12726 3.59004 3.81900 3.93554 4.01382 4.02487 4.05804 4.11485 4.19015 4.29535 4.30679 4.45029 4.57175 4.64250 4.69800 4.75057 4.77283 4.89831 5.06694 5.11010 5.17676 5.18821 5.28504 5.34285 5.41005 5.46446 5.59278 5.60889 5.62535 5.76450 5.87446 5.92739 6.14360 6.18962 6.78989 6.80597 7.14921 7.37066 7.44472 8.89016 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.008084 B = 0.005067 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.779751 B = 5524.746056 C = 7838.776457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.051 0.949 9 C 0.039 3.961 10 C 0.204 3.796 11 H 0.050 0.950 12 N -0.691 5.691 13 C 0.525 3.475 14 O -0.576 6.576 15 C -0.204 4.204 16 C -0.020 4.020 17 C -0.118 4.118 18 C -0.067 4.067 19 C -0.177 4.177 20 C 0.077 3.923 21 N -0.530 5.530 22 C 0.144 3.856 23 C -0.096 4.096 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.136 4.136 29 H 0.264 0.736 30 H 0.014 0.986 31 H -0.001 1.001 32 H 0.408 0.592 33 H 0.170 0.830 34 H 0.185 0.815 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.170 0.830 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.141 0.859 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.631 -16.099 -7.956 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.069 0.931 9 C 0.001 3.999 10 C 0.098 3.902 11 H 0.068 0.932 12 N -0.340 5.340 13 C 0.315 3.685 14 O -0.458 6.458 15 C -0.225 4.225 16 C -0.040 4.040 17 C -0.120 4.120 18 C -0.092 4.092 19 C -0.197 4.197 20 C -0.078 4.078 21 N -0.240 5.240 22 C -0.014 4.014 23 C -0.097 4.097 24 C -0.138 4.138 25 C -0.141 4.141 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.154 4.154 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.017 0.983 32 H 0.244 0.756 33 H 0.187 0.813 34 H 0.202 0.798 35 H 0.184 0.816 36 H 0.185 0.815 37 H 0.187 0.813 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.159 0.841 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.752 -15.690 -6.576 20.125 hybrid contribution -0.262 1.104 -0.310 1.176 sum 10.490 -14.586 -6.886 19.240 Atomic orbital electron populations 1.70068 1.07426 1.27730 1.51322 1.25751 0.95547 1.02566 0.94744 0.85608 0.78386 0.79313 0.78708 1.19098 1.20900 1.20059 1.21358 0.92858 0.91586 1.50741 0.93072 1.19123 0.93277 0.91223 0.96259 1.19617 0.92012 0.91838 0.86707 0.93192 1.45844 1.17405 1.57407 1.13340 1.19181 0.81516 0.77921 0.89846 1.90820 1.69574 1.47345 1.38071 1.23262 0.96345 1.05358 0.97507 1.22628 0.92994 0.91496 0.96875 1.20141 0.99319 0.96438 0.96118 1.22022 0.93180 0.95651 0.98346 1.22329 1.01784 1.01240 0.94313 1.23209 0.95247 0.89057 1.00276 1.67469 1.09531 1.24196 1.22771 1.22554 0.92470 0.98293 0.88064 1.20443 0.98277 0.96287 0.94673 1.21075 0.97979 0.96669 0.98044 1.21455 0.98806 0.94899 0.98919 1.21466 0.99900 1.00966 0.92362 1.21361 0.97614 0.95087 1.00167 1.21138 1.00619 0.96770 0.96917 0.92694 0.96777 0.98266 0.75602 0.81305 0.79792 0.81612 0.81516 0.81332 0.86312 0.85891 0.83364 0.83037 0.84099 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 13.29 21.45 0.28 -54.25 16 2 C 0.01 0.71 5.46 84.65 0.46 1.17 16 3 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.53 -29.12 8.84 25.60 0.23 -28.90 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.04 1.98 4.49 29.85 0.13 2.11 16 10 C 0.20 8.90 2.11 44.24 0.09 8.99 16 11 H 0.05 2.51 7.44 -2.39 -0.02 2.49 16 12 N -0.69 -25.39 4.04 -450.34 -1.82 -27.21 16 13 C 0.53 18.33 6.92 86.38 0.60 18.93 16 14 O -0.58 -24.21 12.13 -4.31 -0.05 -24.27 16 15 C -0.20 -4.87 9.93 23.62 0.23 -4.63 16 16 C -0.02 -0.41 9.81 23.84 0.23 -0.17 16 17 C -0.12 -3.17 4.35 -20.05 -0.09 -3.26 16 18 C -0.07 -1.43 9.95 22.77 0.23 -1.21 16 19 C -0.18 -3.76 10.09 22.32 0.23 -3.53 16 20 C 0.08 2.09 11.17 84.72 0.95 3.04 16 21 N -0.53 -18.83 10.34 -194.50 -2.01 -20.84 16 22 C 0.14 4.99 7.97 85.10 0.68 5.67 16 23 C -0.10 -3.75 4.91 -19.87 -0.10 -3.85 16 24 C -0.12 -4.01 9.32 22.27 0.21 -3.80 16 25 C -0.12 -3.39 10.05 22.27 0.22 -3.16 16 26 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 27 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 28 C -0.14 -5.09 9.67 22.27 0.22 -4.88 16 29 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 30 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.41 13.43 8.58 -92.71 -0.80 12.64 16 33 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.12 4.53 7.46 -2.91 -0.02 4.51 16 39 H 0.12 3.82 7.73 -2.91 -0.02 3.80 16 40 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.11 4.06 8.04 -2.91 -0.02 4.03 16 Total: -1.00 -76.75 371.84 3.62 -73.14 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.22 Total: 31.42 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 4.97 Total: -24.14 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -3.54 Total: -102.30 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -76.75 3.62 -73.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255132373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.189 kcal (2) G-P(sol) polarization free energy of solvation -76.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds