Wall clock time and date at job start Tue Mar 31 2020 13:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99926 * 2 1 4 4 H 1.48501 * 109.47358 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47425 * 300.00076 * 3 2 1 6 6 H 1.48503 * 109.47472 * 60.00207 * 3 2 1 7 7 C 1.37867 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00424 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47392 * 184.73648 * 9 7 2 11 11 H 1.08998 * 109.47237 * 55.44345 * 10 9 7 12 12 N 1.46501 * 109.47151 * 175.43945 * 10 9 7 13 13 C 1.34773 * 120.00239 * 278.83136 * 12 10 9 14 14 O 1.21700 * 119.99679 * 355.19977 * 13 12 10 15 15 C 1.46426 * 120.00270 * 175.19817 * 13 12 10 16 16 C 1.34811 * 119.99962 * 173.45575 * 15 13 12 17 17 C 1.47214 * 119.99894 * 348.62185 * 16 15 13 18 18 C 1.40262 * 120.58035 * 132.35936 * 17 16 15 19 19 C 1.38292 * 118.26543 * 180.02562 * 18 17 16 20 20 C 1.38389 * 119.33087 * 0.02562 * 19 18 17 21 21 N 1.31941 * 121.14030 * 0.02562 * 20 19 18 22 22 C 1.31657 * 121.90404 * 359.68934 * 21 20 19 23 23 C 1.50704 * 109.47039 * 295.43721 * 10 9 7 24 24 C 1.38232 * 119.99857 * 279.72547 * 23 10 9 25 25 C 1.38240 * 119.99467 * 179.78704 * 24 23 10 26 26 C 1.38233 * 119.99941 * 0.44450 * 25 24 23 27 27 C 1.38227 * 120.00140 * 359.80986 * 26 25 24 28 28 C 1.38231 * 120.00118 * 359.97438 * 27 26 25 29 29 H 0.97006 * 119.99464 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46958 * 64.73939 * 9 7 2 31 31 H 1.08997 * 109.47551 * 304.74103 * 9 7 2 32 32 H 0.96999 * 120.00279 * 98.82649 * 12 10 9 33 33 H 1.07998 * 120.00039 * 353.45338 * 15 13 12 34 34 H 1.07997 * 119.99758 * 168.62941 * 16 15 13 35 35 H 1.08002 * 120.87172 * 359.97438 * 18 17 16 36 36 H 1.07995 * 120.33286 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.42992 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.73871 * 180.29517 * 22 21 20 39 39 H 1.07995 * 120.00384 * 0.02562 * 24 23 10 40 40 H 1.08002 * 119.99907 * 180.27395 * 25 24 23 41 41 H 1.08005 * 120.00071 * 179.83091 * 26 25 24 42 42 H 1.07998 * 120.00170 * 179.97438 * 27 26 25 43 43 H 1.08002 * 120.00384 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2410 -3.6595 0.1212 11 1 2.8584 -3.5204 1.0086 12 7 1.5040 -4.9208 0.2319 13 6 0.9980 -5.3035 1.4209 14 8 1.2271 -4.6467 2.4195 15 6 0.1725 -6.5095 1.5114 16 6 -0.2239 -6.9662 2.7162 17 6 0.3689 -6.4125 3.9447 18 6 -0.4468 -6.0155 5.0144 19 6 0.1606 -5.5012 6.1454 20 6 1.5398 -5.3950 6.1853 21 7 2.2833 -5.7753 5.1638 22 6 1.7548 -6.2762 4.0669 23 6 3.1206 -3.6974 -1.1019 24 6 2.6541 -4.2682 -2.2713 25 6 3.4594 -4.2989 -3.3945 26 6 4.7344 -3.7672 -3.3456 27 6 5.2027 -3.2011 -2.1747 28 6 4.3959 -3.1663 -1.0528 29 1 -0.4850 0.8401 -0.0004 30 1 0.6892 -2.5951 -0.9275 31 1 0.5625 -2.5204 0.8464 32 1 1.3802 -5.4804 -0.5506 33 1 -0.1189 -7.0331 0.6128 34 1 -0.9762 -7.7384 2.7801 35 1 -1.5213 -6.1082 4.9562 36 1 -0.4355 -5.1856 6.9889 37 1 2.0158 -4.9932 7.0676 38 1 2.3968 -6.5807 3.2536 39 1 1.6592 -4.6866 -2.3085 40 1 3.0933 -4.7409 -4.3094 41 1 5.3646 -3.7936 -4.2223 42 1 6.1990 -2.7860 -2.1364 43 1 4.7617 -2.7237 -0.1381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255132374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:13 Heat of formation + Delta-G solvation = 46.240891 kcal Electronic energy + Delta-G solvation = -26180.954345 eV Core-core repulsion = 22577.466737 eV Total energy + Delta-G solvation = -3603.487607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.19101 -39.39693 -38.43526 -35.32185 -33.97740 -32.82735 -31.96644 -31.23010 -30.46371 -29.64457 -28.54631 -25.36566 -23.93467 -23.25946 -22.38810 -22.21360 -21.67215 -19.68211 -19.36392 -17.51188 -16.80214 -16.69898 -16.14250 -15.88397 -15.34679 -14.89150 -14.65808 -14.54690 -14.19505 -14.09297 -13.79070 -13.38096 -13.20993 -12.99075 -12.91768 -12.82477 -12.54555 -12.43583 -12.13780 -11.61844 -11.51796 -11.13844 -10.84383 -10.72114 -10.64291 -10.21067 -10.05239 -9.85251 -9.69140 -9.50103 -9.17071 -9.06183 -8.52320 -8.47637 -8.33249 -8.15646 -8.01922 -5.98516 -3.99677 0.77078 1.52760 1.80868 1.84027 1.86195 3.33050 3.40192 3.43794 3.59976 3.76601 4.06278 4.27224 4.48995 4.57766 4.82040 4.93177 5.03118 5.09594 5.23568 5.27267 5.29435 5.36656 5.39674 5.40187 5.51656 5.66195 5.88726 5.90465 5.98356 6.04127 6.11442 6.22157 6.31761 6.37914 6.41129 6.51732 6.73503 6.82667 6.86376 6.89207 6.90393 7.16122 7.42567 7.63141 7.71709 7.99724 8.04245 8.22158 8.37372 8.71970 9.05157 9.63415 11.13249 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.004226 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.053463 B = 6623.540618 C = 8187.439484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.181 3.819 11 H 0.087 0.913 12 N -0.716 5.716 13 C 0.532 3.468 14 O -0.525 6.525 15 C -0.194 4.194 16 C -0.037 4.037 17 C -0.109 4.109 18 C -0.063 4.063 19 C -0.183 4.183 20 C 0.100 3.900 21 N -0.489 5.489 22 C 0.171 3.829 23 C -0.047 4.047 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.135 4.135 27 C -0.120 4.120 28 C -0.099 4.099 29 H 0.259 0.741 30 H 0.014 0.986 31 H 0.031 0.969 32 H 0.391 0.609 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -16.534 1.911 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.079 3.921 11 H 0.105 0.895 12 N -0.366 5.366 13 C 0.320 3.680 14 O -0.402 6.402 15 C -0.215 4.215 16 C -0.057 4.057 17 C -0.111 4.111 18 C -0.088 4.088 19 C -0.203 4.203 20 C -0.056 4.056 21 N -0.198 5.198 22 C 0.012 3.988 23 C -0.048 4.048 24 C -0.139 4.139 25 C -0.139 4.139 26 C -0.153 4.153 27 C -0.138 4.138 28 C -0.117 4.117 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.225 0.775 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.384 -15.814 2.689 16.217 hybrid contribution -0.834 0.960 -0.752 1.478 sum 1.550 -14.854 1.936 15.059 Atomic orbital electron populations 1.69983 1.06044 1.26401 1.50908 1.24955 0.94784 0.99153 0.95312 0.86564 0.80223 0.83943 0.77500 1.19636 1.21086 1.21044 1.21118 0.93098 0.90390 1.50358 0.92238 1.19403 0.93596 0.90462 0.97690 1.20320 0.93352 0.83655 0.94823 0.89509 1.46250 1.56009 1.23819 1.10546 1.18343 0.80281 0.85721 0.83673 1.90901 1.58686 1.55748 1.34892 1.23181 1.02256 0.97518 0.98503 1.22173 0.95656 0.96996 0.90903 1.19852 0.95064 1.01715 0.94458 1.21553 0.99690 0.95495 0.92108 1.21909 0.96376 1.02689 0.99322 1.22708 0.90888 0.95332 0.96640 1.67562 1.40689 1.10687 1.00889 1.22657 0.91414 0.90917 0.93774 1.19918 0.93862 0.95770 0.95251 1.20831 0.99187 1.00974 0.92885 1.20975 0.94499 1.00625 0.97838 1.20980 0.96264 1.00366 0.97712 1.21045 0.99618 0.99884 0.93295 1.20994 0.93399 0.98504 0.98813 0.93138 0.96733 0.95101 0.77466 0.84914 0.84591 0.85207 0.85189 0.83334 0.83909 0.86717 0.86716 0.86863 0.86606 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.51 -14.39 8.63 -34.44 -0.30 -14.69 16 8 H 0.06 1.62 6.35 -52.48 -0.33 1.29 16 9 C 0.03 0.68 4.69 -27.88 -0.13 0.55 16 10 C 0.18 3.74 2.21 -69.08 -0.15 3.59 16 11 H 0.09 1.98 7.50 -51.93 -0.39 1.59 16 12 N -0.72 -12.01 5.04 -56.32 -0.28 -12.29 16 13 C 0.53 9.15 6.83 -12.97 -0.09 9.06 16 14 O -0.52 -11.19 12.16 5.19 0.06 -11.13 16 15 C -0.19 -2.37 9.93 -37.50 -0.37 -2.74 16 16 C -0.04 -0.42 9.81 -37.15 -0.36 -0.78 16 17 C -0.11 -1.53 4.36 -104.91 -0.46 -1.99 16 18 C -0.06 -0.81 9.95 -38.80 -0.39 -1.20 16 19 C -0.18 -2.30 10.10 -39.51 -0.40 -2.70 16 20 C 0.10 1.40 11.17 -17.45 -0.19 1.21 16 21 N -0.49 -8.17 10.34 -12.84 -0.13 -8.31 16 22 C 0.17 2.72 7.96 -17.05 -0.14 2.59 16 23 C -0.05 -0.88 4.47 -104.62 -0.47 -1.35 16 24 C -0.12 -1.95 9.02 -39.58 -0.36 -2.30 16 25 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 26 C -0.14 -1.93 10.05 -39.59 -0.40 -2.33 16 27 C -0.12 -1.86 10.05 -39.59 -0.40 -2.26 16 28 C -0.10 -1.77 8.57 -39.59 -0.34 -2.11 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.39 5.24 6.85 -40.82 -0.28 4.96 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.14 2.20 7.45 -52.49 -0.39 1.81 16 39 H 0.11 1.65 6.95 -52.49 -0.36 1.29 16 40 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.12 2.18 7.83 -52.49 -0.41 1.77 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -35.54 366.91 -10.07 -45.61 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.53 Total: 7.96 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -5.43 Total: -17.98 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.32 Total: -47.18 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.06 Total: -11.13 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.54 -10.07 -45.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255132374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.854 kcal (2) G-P(sol) polarization free energy of solvation -35.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds