Wall clock time and date at job start Tue Mar 31 2020 13:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99926 * 2 1 4 4 H 1.48501 * 109.47358 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47425 * 300.00076 * 3 2 1 6 6 H 1.48503 * 109.47472 * 60.00207 * 3 2 1 7 7 C 1.37867 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00424 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47392 * 184.73648 * 9 7 2 11 11 H 1.08998 * 109.47237 * 55.44345 * 10 9 7 12 12 N 1.46501 * 109.47151 * 175.43945 * 10 9 7 13 13 C 1.34773 * 120.00239 * 278.83136 * 12 10 9 14 14 O 1.21700 * 119.99679 * 355.19977 * 13 12 10 15 15 C 1.46426 * 120.00270 * 175.19817 * 13 12 10 16 16 C 1.34811 * 119.99962 * 173.45575 * 15 13 12 17 17 C 1.47214 * 119.99894 * 348.62185 * 16 15 13 18 18 C 1.40262 * 120.58035 * 132.35936 * 17 16 15 19 19 C 1.38292 * 118.26543 * 180.02562 * 18 17 16 20 20 C 1.38389 * 119.33087 * 0.02562 * 19 18 17 21 21 N 1.31941 * 121.14030 * 0.02562 * 20 19 18 22 22 C 1.31657 * 121.90404 * 359.68934 * 21 20 19 23 23 C 1.50704 * 109.47039 * 295.43721 * 10 9 7 24 24 C 1.38232 * 119.99857 * 279.72547 * 23 10 9 25 25 C 1.38240 * 119.99467 * 179.78704 * 24 23 10 26 26 C 1.38233 * 119.99941 * 0.44450 * 25 24 23 27 27 C 1.38227 * 120.00140 * 359.80986 * 26 25 24 28 28 C 1.38231 * 120.00118 * 359.97438 * 27 26 25 29 29 H 0.97006 * 119.99464 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46958 * 64.73939 * 9 7 2 31 31 H 1.08997 * 109.47551 * 304.74103 * 9 7 2 32 32 H 0.96999 * 120.00279 * 98.82649 * 12 10 9 33 33 H 1.07998 * 120.00039 * 353.45338 * 15 13 12 34 34 H 1.07997 * 119.99758 * 168.62941 * 16 15 13 35 35 H 1.08002 * 120.87172 * 359.97438 * 18 17 16 36 36 H 1.07995 * 120.33286 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.42992 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.73871 * 180.29517 * 22 21 20 39 39 H 1.07995 * 120.00384 * 0.02562 * 24 23 10 40 40 H 1.08002 * 119.99907 * 180.27395 * 25 24 23 41 41 H 1.08005 * 120.00071 * 179.83091 * 26 25 24 42 42 H 1.07998 * 120.00170 * 179.97438 * 27 26 25 43 43 H 1.08002 * 120.00384 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2410 -3.6595 0.1212 11 1 2.8584 -3.5204 1.0086 12 7 1.5040 -4.9208 0.2319 13 6 0.9980 -5.3035 1.4209 14 8 1.2271 -4.6467 2.4195 15 6 0.1725 -6.5095 1.5114 16 6 -0.2239 -6.9662 2.7162 17 6 0.3689 -6.4125 3.9447 18 6 -0.4468 -6.0155 5.0144 19 6 0.1606 -5.5012 6.1454 20 6 1.5398 -5.3950 6.1853 21 7 2.2833 -5.7753 5.1638 22 6 1.7548 -6.2762 4.0669 23 6 3.1206 -3.6974 -1.1019 24 6 2.6541 -4.2682 -2.2713 25 6 3.4594 -4.2989 -3.3945 26 6 4.7344 -3.7672 -3.3456 27 6 5.2027 -3.2011 -2.1747 28 6 4.3959 -3.1663 -1.0528 29 1 -0.4850 0.8401 -0.0004 30 1 0.6892 -2.5951 -0.9275 31 1 0.5625 -2.5204 0.8464 32 1 1.3802 -5.4804 -0.5506 33 1 -0.1189 -7.0331 0.6128 34 1 -0.9762 -7.7384 2.7801 35 1 -1.5213 -6.1082 4.9562 36 1 -0.4355 -5.1856 6.9889 37 1 2.0158 -4.9932 7.0676 38 1 2.3968 -6.5807 3.2536 39 1 1.6592 -4.6866 -2.3085 40 1 3.0933 -4.7409 -4.3094 41 1 5.3646 -3.7936 -4.2223 42 1 6.1990 -2.7860 -2.1364 43 1 4.7617 -2.7237 -0.1381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255132374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:12 Heat of formation + Delta-G solvation = 23.645306 kcal Electronic energy + Delta-G solvation = -26181.934163 eV Core-core repulsion = 22577.466737 eV Total energy + Delta-G solvation = -3604.467426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41133 -40.65631 -39.70818 -36.80937 -35.13834 -34.86486 -33.05904 -32.69201 -31.69208 -30.73337 -30.32413 -27.04036 -25.24982 -24.36229 -23.97105 -23.60540 -22.84523 -21.18674 -20.61313 -18.77076 -18.53666 -17.84970 -17.51487 -17.09374 -16.74180 -16.65610 -16.08412 -15.86057 -15.50641 -15.28112 -15.08105 -14.64737 -14.55160 -14.28895 -14.19484 -14.15873 -13.95589 -13.82330 -13.64912 -13.16046 -12.98174 -12.66199 -12.61195 -12.54132 -12.05485 -11.87450 -11.62626 -11.39953 -11.17993 -10.91969 -10.60331 -10.56292 -10.26179 -9.90524 -9.71359 -9.45646 -9.26904 -8.22832 -6.31238 -0.26536 0.47119 0.54610 0.59740 0.81488 1.33337 1.34743 1.47155 2.26406 2.40332 2.49888 2.97360 2.99930 3.12476 3.58572 3.79585 3.85619 3.95434 4.04468 4.04841 4.09125 4.23914 4.29387 4.34632 4.50170 4.55055 4.67718 4.72297 4.80409 4.82557 4.88459 5.04270 5.14047 5.17074 5.22083 5.31464 5.32767 5.41820 5.47946 5.55877 5.65584 5.68597 5.73184 5.86269 5.90481 6.19286 6.22289 6.71017 6.82042 7.12172 7.35887 7.41540 8.89844 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.004226 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.053463 B = 6623.540618 C = 8187.439484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.957 3.043 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.282 1.282 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.043 3.957 10 C 0.201 3.799 11 H 0.051 0.949 12 N -0.709 5.709 13 C 0.521 3.479 14 O -0.575 6.575 15 C -0.203 4.203 16 C -0.017 4.017 17 C -0.123 4.123 18 C -0.071 4.071 19 C -0.181 4.181 20 C 0.077 3.923 21 N -0.527 5.527 22 C 0.147 3.853 23 C -0.073 4.073 24 C -0.128 4.128 25 C -0.117 4.117 26 C -0.128 4.128 27 C -0.124 4.124 28 C -0.125 4.125 29 H 0.261 0.739 30 H -0.003 1.003 31 H -0.019 1.019 32 H 0.409 0.591 33 H 0.177 0.823 34 H 0.187 0.813 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.170 0.830 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.139 0.861 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 -17.775 0.069 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.081 0.919 9 C 0.005 3.995 10 C 0.096 3.904 11 H 0.069 0.931 12 N -0.360 5.360 13 C 0.311 3.689 14 O -0.456 6.456 15 C -0.224 4.224 16 C -0.037 4.037 17 C -0.125 4.125 18 C -0.097 4.097 19 C -0.201 4.201 20 C -0.078 4.078 21 N -0.237 5.237 22 C -0.012 4.012 23 C -0.074 4.074 24 C -0.146 4.146 25 C -0.135 4.135 26 C -0.146 4.146 27 C -0.142 4.142 28 C -0.144 4.144 29 H 0.070 0.930 30 H 0.015 0.985 31 H 0.000 1.000 32 H 0.247 0.753 33 H 0.194 0.806 34 H 0.204 0.796 35 H 0.180 0.820 36 H 0.181 0.819 37 H 0.187 0.813 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.169 0.831 42 H 0.157 0.843 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.125 -17.096 0.816 17.247 hybrid contribution -0.731 1.314 -0.133 1.510 sum 1.393 -15.782 0.683 15.858 Atomic orbital electron populations 1.70116 1.07693 1.27423 1.52130 1.25879 0.95689 1.03058 0.94993 0.85510 0.79289 0.79266 0.77757 1.18540 1.19929 1.20815 1.21512 0.93497 0.91581 1.49588 0.91921 1.19120 0.93543 0.92463 0.94385 1.19628 0.92120 0.83666 0.94938 0.93059 1.46070 1.55593 1.22684 1.11629 1.19324 0.79871 0.86949 0.82749 1.90881 1.60509 1.57794 1.36446 1.23250 1.02051 0.96189 1.00873 1.22665 0.95096 0.96828 0.89123 1.20209 0.94518 1.01651 0.96158 1.22038 1.01257 0.94706 0.91669 1.22322 0.95993 1.01397 1.00358 1.23184 0.92078 0.95695 0.96806 1.67472 1.42317 1.11894 1.01991 1.22644 0.92642 0.92220 0.93657 1.19776 0.94117 0.98343 0.95155 1.21059 1.00214 1.00698 0.92626 1.21417 0.94236 0.99568 0.98267 1.21459 0.96551 0.98380 0.98208 1.21348 1.00302 0.99666 0.92842 1.21062 0.94084 0.99712 0.99534 0.92975 0.98461 1.00032 0.75314 0.80564 0.79576 0.82023 0.81879 0.81305 0.85065 0.85362 0.83092 0.83138 0.84284 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.97 13.29 21.44 0.28 -58.68 16 2 C 0.00 0.07 5.46 84.65 0.46 0.54 16 3 Si 0.96 46.46 29.54 68.60 2.03 48.49 16 4 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.52 -30.85 8.63 25.60 0.22 -30.63 16 8 H 0.06 3.57 6.35 -2.91 -0.02 3.55 16 9 C 0.04 2.37 4.69 29.85 0.14 2.51 16 10 C 0.20 8.88 2.21 44.25 0.10 8.98 16 11 H 0.05 2.59 7.50 -2.39 -0.02 2.57 16 12 N -0.71 -24.84 5.04 -450.33 -2.27 -27.11 16 13 C 0.52 18.67 6.83 86.38 0.59 19.26 16 14 O -0.58 -26.36 12.16 -4.35 -0.05 -26.42 16 15 C -0.20 -4.71 9.93 23.62 0.23 -4.47 16 16 C -0.02 -0.36 9.81 23.84 0.23 -0.12 16 17 C -0.12 -3.45 4.36 -20.05 -0.09 -3.54 16 18 C -0.07 -1.75 9.95 22.77 0.23 -1.53 16 19 C -0.18 -4.42 10.10 22.32 0.23 -4.20 16 20 C 0.08 2.24 11.17 84.71 0.95 3.19 16 21 N -0.53 -18.77 10.34 -194.52 -2.01 -20.78 16 22 C 0.15 4.95 7.96 85.10 0.68 5.63 16 23 C -0.07 -2.79 4.47 -19.87 -0.09 -2.88 16 24 C -0.13 -4.00 9.02 22.27 0.20 -3.80 16 25 C -0.12 -3.01 10.05 22.27 0.22 -2.78 16 26 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 27 C -0.12 -3.64 10.05 22.27 0.22 -3.41 16 28 C -0.13 -4.62 8.57 22.27 0.19 -4.42 16 29 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 30 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 31 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 32 H 0.41 10.97 6.85 -92.71 -0.63 10.33 16 33 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 37 H 0.17 3.88 8.06 -2.91 -0.02 3.85 16 38 H 0.13 4.46 7.45 -2.91 -0.02 4.44 16 39 H 0.13 3.53 6.95 -2.91 -0.02 3.51 16 40 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 42 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 43 H 0.10 4.05 7.83 -2.91 -0.02 4.02 16 Total: -1.00 -84.54 366.91 3.31 -81.24 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.39 Total: 27.93 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 4.94 Total: -24.67 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -4.00 Total: -106.57 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.42 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -84.54 3.31 -81.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255132374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.884 kcal (2) G-P(sol) polarization free energy of solvation -84.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds