Wall clock time and date at job start Tue Mar 31 2020 13:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31261 * 1 3 3 Si 1.86794 * 120.00029 * 2 1 4 4 H 1.48503 * 109.47056 * 275.48485 * 3 2 1 5 5 H 1.48504 * 109.47358 * 35.48265 * 3 2 1 6 6 H 1.48496 * 109.47386 * 155.48216 * 3 2 1 7 7 C 1.39204 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00060 * 349.50363 * 7 2 1 9 9 N 1.36652 * 119.99926 * 169.51090 * 7 2 1 10 10 C 1.34779 * 119.99684 * 311.99325 * 9 7 2 11 11 O 1.21608 * 120.00038 * 2.92301 * 10 9 7 12 12 C 1.47680 * 119.99749 * 182.92794 * 10 9 7 13 13 C 1.39061 * 121.12274 * 316.75086 * 12 10 9 14 14 C 1.39154 * 119.56746 * 179.97438 * 13 12 10 15 15 C 1.50699 * 119.05249 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.49746 * 343.76673 * 15 14 13 17 17 C 1.52999 * 117.49856 * 275.10879 * 15 14 13 18 18 N 1.31062 * 121.90292 * 0.06504 * 14 13 12 19 19 C 1.33569 * 121.84935 * 359.95399 * 18 14 13 20 20 C 1.40700 * 120.97058 * 180.02562 * 19 18 14 21 21 C 1.36080 * 119.73774 * 179.97438 * 20 19 18 22 22 C 1.39324 * 121.05019 * 359.97438 * 21 20 19 23 23 C 1.36277 * 120.83063 * 359.97438 * 22 21 20 24 24 C 1.40050 * 119.64483 * 0.02562 * 23 22 21 25 25 C 1.46492 * 120.00042 * 131.99462 * 9 7 2 26 26 C 1.52998 * 117.50328 * 4.08080 * 25 9 7 27 27 C 1.53004 * 117.50100 * 295.45473 * 25 9 7 28 28 H 0.96994 * 120.00294 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.21427 * 0.05535 * 13 12 10 30 30 H 1.08997 * 115.55020 * 129.43398 * 15 14 13 31 31 H 1.09005 * 117.49631 * 359.97438 * 16 15 14 32 32 H 1.08997 * 117.50248 * 145.01887 * 16 15 14 33 33 H 1.09002 * 117.50083 * 214.97793 * 17 15 14 34 34 H 1.09000 * 117.49797 * 359.97377 * 17 15 14 35 35 H 1.08000 * 120.12917 * 359.97438 * 20 19 18 36 36 H 1.08000 * 119.47289 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.58343 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.18044 * 180.02562 * 23 22 21 39 39 H 1.08999 * 115.55351 * 149.79131 * 25 9 7 40 40 H 1.08998 * 117.49487 * 359.97438 * 26 25 9 41 41 H 1.09000 * 117.50236 * 145.02466 * 26 25 9 42 42 H 1.08993 * 117.50250 * 214.98191 * 27 25 9 43 43 H 1.09000 * 117.49294 * 0.02562 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.3782 2.1133 -1.3937 5 1 1.5068 2.6165 0.8127 6 1 3.5972 1.4095 0.5810 7 6 2.0086 -1.2055 0.0005 8 1 1.4822 -2.1329 0.1713 9 7 3.3580 -1.2155 -0.2149 10 6 3.8810 -0.5221 -1.2456 11 8 3.1586 0.1550 -1.9517 12 6 5.3312 -0.5847 -1.5174 13 6 6.2598 -0.5115 -0.4849 14 6 7.6187 -0.5743 -0.7778 15 6 8.6149 -0.4944 0.3501 16 6 8.1146 0.0263 1.6990 17 6 9.0263 0.8982 0.8321 18 7 8.0574 -0.7001 -2.0064 19 6 7.2245 -0.7762 -3.0478 20 6 7.7156 -0.9116 -4.3593 21 6 6.8443 -0.9874 -5.4019 22 6 5.4678 -0.9335 -5.1935 23 6 4.9562 -0.8038 -3.9371 24 6 5.8240 -0.7229 -2.8407 25 6 4.2361 -1.9798 0.6743 26 6 3.5750 -2.8222 1.7671 27 6 4.3191 -1.5374 2.1367 28 1 -0.4850 0.8400 0.0004 29 1 5.9285 -0.4079 0.5378 30 1 9.3745 -1.2760 0.3628 31 1 7.0649 0.3115 1.7704 32 1 8.5452 -0.4125 2.5991 33 1 10.0564 1.0327 1.1621 34 1 8.5767 1.7567 0.3330 35 1 8.7798 -0.9553 -4.5379 36 1 7.2260 -1.0909 -6.4069 37 1 4.7978 -0.9962 -6.0382 38 1 3.8874 -0.7636 -3.7875 39 1 5.1433 -2.3727 0.2153 40 1 2.4866 -2.8074 1.8246 41 1 4.0471 -3.7697 2.0271 42 1 5.2806 -1.6396 2.6397 43 1 3.7199 -0.6778 2.4371 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263773806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:10 Heat of formation + Delta-G solvation = 95.746829 kcal Electronic energy + Delta-G solvation = -27621.965829 eV Core-core repulsion = 24020.624960 eV Total energy + Delta-G solvation = -3601.340869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95494 -39.07967 -38.07784 -36.57199 -35.87313 -33.42636 -32.91486 -31.62570 -30.19213 -29.86177 -25.93658 -24.58008 -24.06438 -22.60772 -22.30671 -21.90358 -21.48739 -21.04521 -19.42499 -17.80940 -17.53199 -16.99720 -16.57671 -15.79186 -15.59702 -15.21940 -14.77409 -14.35470 -14.20280 -14.00307 -13.91382 -13.80651 -13.33285 -13.10694 -12.96169 -12.61106 -12.25132 -11.83631 -11.70014 -11.61813 -11.40919 -11.19775 -11.13708 -10.84283 -10.55227 -10.46472 -10.42168 -10.29540 -10.17241 -10.16485 -9.72105 -9.50421 -8.85225 -8.61180 -8.47800 -7.98318 -7.65950 -6.38374 -4.22589 0.43848 0.97366 2.04349 2.95330 3.20710 3.34676 3.55030 3.64162 3.68946 4.04657 4.08903 4.30762 4.34734 4.53144 4.71672 4.81385 4.85011 4.85900 5.02864 5.04981 5.08906 5.15780 5.28949 5.36200 5.38694 5.44883 5.53563 5.57342 5.60493 5.69373 5.76808 5.87080 6.00635 6.02921 6.07039 6.12628 6.18096 6.25047 6.28372 6.51768 6.55141 6.70001 6.75925 6.77762 7.03749 7.61329 7.80765 8.07973 8.51543 8.63569 9.16320 9.53534 10.63982 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010638 B = 0.006507 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.553115 B = 4301.978272 C = 5794.784685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.089 3.911 3 Si 0.922 3.078 4 H -0.257 1.257 5 H -0.309 1.309 6 H -0.282 1.282 7 C -0.339 4.339 8 H 0.102 0.898 9 N -0.414 5.414 10 C 0.484 3.516 11 O -0.534 6.534 12 C -0.032 4.032 13 C -0.163 4.163 14 C 0.187 3.813 15 C -0.106 4.106 16 C -0.174 4.174 17 C -0.162 4.162 18 N -0.475 5.475 19 C 0.134 3.866 20 C -0.106 4.106 21 C -0.097 4.097 22 C -0.132 4.132 23 C -0.073 4.073 24 C -0.079 4.079 25 C 0.052 3.948 26 C -0.168 4.168 27 C -0.198 4.198 28 H 0.277 0.723 29 H 0.148 0.852 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.148 0.852 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.949 -2.587 -0.330 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.121 4.121 3 Si 0.754 3.246 4 H -0.182 1.182 5 H -0.239 1.239 6 H -0.207 1.207 7 C -0.465 4.465 8 H 0.120 0.880 9 N -0.132 5.132 10 C 0.276 3.724 11 O -0.418 6.418 12 C -0.043 4.043 13 C -0.184 4.184 14 C 0.036 3.964 15 C -0.125 4.125 16 C -0.211 4.211 17 C -0.200 4.200 18 N -0.184 5.184 19 C 0.012 3.988 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.150 4.150 23 C -0.092 4.092 24 C -0.082 4.082 25 C -0.053 4.053 26 C -0.205 4.205 27 C -0.236 4.236 28 H 0.087 0.913 29 H 0.166 0.834 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.165 0.835 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.234 -2.239 -0.961 16.415 hybrid contribution -0.538 0.828 0.238 1.016 sum 15.696 -1.411 -0.723 15.776 Atomic orbital electron populations 1.69608 1.06808 1.28695 1.43922 1.25477 0.95091 0.99746 0.91814 0.86079 0.78625 0.81540 0.78392 1.18244 1.23912 1.20729 1.18849 0.79382 0.95445 1.52822 0.88028 1.42975 1.06641 1.42310 1.21234 1.18043 0.85935 0.86229 0.82233 1.90585 1.59985 1.42085 1.49125 1.20825 0.95455 0.95357 0.92708 1.22418 0.92838 1.02372 1.00770 1.20346 0.91075 0.93822 0.91184 1.20775 1.00288 0.99315 0.92141 1.23165 1.00805 1.03538 0.93633 1.22965 1.00484 0.93511 1.03013 1.67474 1.38678 1.13693 0.98531 1.18750 0.88302 0.98546 0.93205 1.20670 1.00152 1.01770 0.89907 1.20878 0.93332 0.98615 0.98863 1.20948 0.95237 1.01519 0.97299 1.21447 1.01395 0.94909 0.91441 1.18687 0.94045 1.02095 0.93377 1.22036 0.96258 1.00547 0.86450 1.23165 1.01840 0.93860 1.01669 1.23334 1.01874 0.99852 0.98558 0.91338 0.83445 0.85919 0.87982 0.87827 0.88136 0.88734 0.85017 0.85596 0.85609 0.83459 0.86825 0.86887 0.89232 0.89051 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.00 13.95 55.51 0.77 -24.22 16 2 C 0.09 2.53 5.07 -17.44 -0.09 2.44 16 3 Si 0.92 24.21 24.45 -169.99 -4.16 20.05 16 4 H -0.26 -7.17 6.44 56.52 0.36 -6.80 16 5 H -0.31 -7.92 7.11 56.52 0.40 -7.52 16 6 H -0.28 -7.11 6.96 56.52 0.39 -6.71 16 7 C -0.34 -9.06 8.46 -15.04 -0.13 -9.19 16 8 H 0.10 2.83 7.30 -52.49 -0.38 2.45 16 9 N -0.41 -9.70 2.44 -108.87 -0.27 -9.97 16 10 C 0.48 11.63 5.04 -12.40 -0.06 11.57 16 11 O -0.53 -14.50 10.46 5.27 0.06 -14.45 16 12 C -0.03 -0.66 5.22 -104.34 -0.54 -1.20 16 13 C -0.16 -2.87 6.93 -38.94 -0.27 -3.14 16 14 C 0.19 2.98 6.46 -82.58 -0.53 2.44 16 15 C -0.11 -1.29 6.19 -91.77 -0.57 -1.86 16 16 C -0.17 -1.83 9.78 -26.69 -0.26 -2.09 16 17 C -0.16 -1.74 10.24 -26.69 -0.27 -2.01 16 18 N -0.47 -8.03 10.19 -7.27 -0.07 -8.11 16 19 C 0.13 2.33 6.61 -84.87 -0.56 1.77 16 20 C -0.11 -1.52 9.99 -39.43 -0.39 -1.92 16 21 C -0.10 -1.25 9.94 -39.95 -0.40 -1.64 16 22 C -0.13 -1.93 9.96 -39.88 -0.40 -2.33 16 23 C -0.07 -1.35 9.18 -39.61 -0.36 -1.72 16 24 C -0.08 -1.53 5.76 -106.51 -0.61 -2.15 16 25 C 0.05 0.97 4.44 -67.93 -0.30 0.67 16 26 C -0.17 -2.77 9.82 -26.73 -0.26 -3.03 16 27 C -0.20 -3.19 9.50 -26.73 -0.25 -3.44 16 28 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.15 2.46 3.97 -52.49 -0.21 2.26 16 30 H 0.12 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.10 1.20 6.34 -51.93 -0.33 0.87 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.15 3.03 6.10 -52.48 -0.32 2.71 16 39 H 0.11 1.94 6.20 -51.93 -0.32 1.62 16 40 H 0.11 2.12 6.64 -51.93 -0.35 1.77 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -31.98 346.60 -10.03 -42.01 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.32 Total: 6.27 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -6.27 Total: -16.82 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.43 Total: -42.30 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.06 Total: -14.45 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -4.16 Total: 20.05 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.98 -10.03 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263773806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.761 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds